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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:1102291..1104948 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04290.1 vs.
Match: EWM28031.1 (hypothetical protein Naga_100008g77 [Nannochloropsis gaditana]) HSP 1 Score: 531.2 bits (1367), Expect = 4.200e-147 Identity = 293/526 (55.70%), Postives = 355/526 (67.49%), Query Frame = 0
Query: 81 YLRRARAYEAMGKLERAQEVAMQALCLQPHNEEAFRKVQSLTRDIGLTDFGVGPSSEQLTKEGAGALVGWSKEEQPAHWYRKETVEMMEKSLPYTVLHALELAIHARVSPEAVLKKKTRLCIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSDPQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLHEAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTGGNLDHSRKHHNLILQAMGVKFALHLRTSRFGIVHGQRACKNHNLCAFSGAAPLMPGRERQPSTAEECGEVRALLQRLGLEMETEGRATMRLALLNQKATARNVAQMALASSKSLTRSFCDEPAAAAAAVAADGGAGAVAPIAPAAAPVAAAAALGKAGGRNNPELEKKHNSTGKSIMYRRKDKELSLPNDSEETQEAADEAANNRPDTPRQSTPT-------AAAAAVAAAGNHEYMKGGVTTQSPGHGWSCRSFRKGQNGIYAVENA 600
+L+R + +A GK E AQ AMQA L P EA KV SLTR+I LTDFGVGPS+ QLT EGAG + W ++E P HWYRK T EMMEKSLPYT LHALELAIHA+ P +L+KK RLCIHLAGASSELEG +DF V+F+KLPHLEEL+VVQ+GW+G+ GPCKR + DPQAPP GL+VGET+ LG G RLR++R++GLYHDFL++A +H FDGQGYLHEAPD+VL+ANP LD +FD WAPTLACLRDAGY TV+TGGNLDHSR+HHN ILQAMGV+ ALHLRTSRFGIVHG+RACKNH+LCAF G AP +P R PS+ +E VR LL+ +G++ G RLALL Q+ +VAQ ALA+S+ L G G I P A + + N + K H+ KE P E++ E +EAAN P TP Q+TPT AA+ + + VTTQSP GWSCRSFRKGQNGIY V+++
Sbjct: 99 FLQRTKTLQAAGKPEYAQAAAMQAFLLLPDAPEARAKVLSLTREISLTDFGVGPSANQLTTEGAGLFIDWGQDEAPEHWYRKGTGEMMEKSLPYTALHALELAIHAQHLPTTILQKKARLCIHLAGASSELEGLADFSVIFEKLPHLEELEVVQVGWMGVPGPCKRTLPDPQAPPSGLIVGETKMLGGGCRLRIRRYKGLYHDFLSKAFRHHFDGQGYLHEAPDLVLMANPSLDAYFDSWAPTLACLRDAGYFTVVTGGNLDHSREHHNPILQAMGVRMALHLRTSRFGIVHGRRACKNHHLCAFLGPAPFLPENLRHPSSDQEWRAVRHLLRHIGVDTGARGEMQARLALLKQQVAVISVAQTALAASRRL-------------------GLGYEGEILPKRNGSIAGSISVENETCNAFKKVKLHDE-----------KERPFPVKDEDSGEGEEEAANTCPKTPVQTTPTHKEEETDVWGAAITHSCDSIKTPTRVTTQSP--GWSCRSFRKGQNGIYRVKDS 592
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04290.1 ID=NO05G04290.1|Name=NO05G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2385bp
ACAGGCACGCAACAGGAATCTGCACCCGAAAGCCCAGCTTCTTCCGGTAT
GTATGTCCTAGAACACAGCCAGCTCAACCCCAGCCTCCACAAGACGGGCT
CGGCCATTCTCGACCAAGAACAAGCCGTCCAAAAAAATTCCATGGGACAG
AACGAGGGCATGGGACAGTACGAGGCCACGGATCAGCAGCACCAGTGCAC
CGAATTCCCTGCCGAGCGCAATTTCGTGAGGACCTTACGCCATGTTGCCG
ATGATGCGTCGCTCCTCGACCGGCACTATGCTCCTGCCTACCTCCGCCGC
GCGAGGGCCTATGAAGCGATGGGCAAGCTTGAACGTGCCCAAGAAGTAGC
CATGCAAGCCCTGTGCCTCCAACCACACAATGAGGAGGCCTTCCGAAAAG
TCCAATCTTTAACACGAGATATAGGTTTAACCGATTTTGGGGTTGGCCCA
TCCTCGGAGCAGTTGACAAAGGAGGGAGCGGGGGCCTTGGTGGGTTGGTC
GAAGGAAGAGCAGCCCGCGCATTGGTACCGGAAAGAGACTGTGGAGATGA
TGGAGAAATCATTGCCTTACACGGTGTTGCATGCATTGGAGCTGGCGATT
CACGCGCGTGTCTCACCCGAGGCAGTGCTGAAGAAGAAGACGAGGTTGTG
TATTCATCTCGCAGGCGCCTCATCGGAACTGGAGGGGTTTTCGGATTTTG
GCGTCCTTTTCGATAAATTGCCTCATTTGGAGGAGTTGCAAGTGGTACAA
ATCGGGTGGGTGGGATTGGTGGGGCCCTGTAAACGTTTCGTGTCTGACCC
GCAAGCCCCCCCTCCGGGATTGTTGGTGGGGGAAACGCGGCGCCTAGGGC
ATGGACGGCGCTTGCGGGTGCAACGATGGAGGGGGTTGTACCATGATTTT
TTGGCGAGGGCCTCCAAGCACGAATTTGATGGTCAGGGGTATTTGCACGA
GGCTCCGGATGTGGTGTTGCTTGCGAATCCGGGCTTGGATTTCTTCTTTG
ATTGCTGGGCGCCGACATTGGCATGTTTGCGAGATGCGGGTTATTTGACA
GTGTTGACGGGCGGGAACCTCGATCATTCTCGTAAGCACCATAATTTAAT
TCTGCAGGCAATGGGTGTCAAGTTTGCCTTACACCTACGGACGTCGAGGT
TTGGGATTGTCCATGGGCAGCGGGCTTGTAAGAACCATAATTTGTGCGCA
TTCTCAGGGGCGGCACCTTTGATGCCCGGGAGGGAACGACAACCGTCCAC
GGCGGAGGAATGTGGGGAGGTTAGGGCGTTGTTGCAGCGGTTGGGGTTGG
AAATGGAAACGGAGGGCAGGGCGACGATGCGCTTAGCGCTGTTGAACCAG
AAGGCGACCGCGAGGAATGTGGCGCAGATGGCCCTGGCGTCGTCGAAGAG
TTTGACACGGAGCTTTTGTGACGAGCCTGCCGCAGCTGCTGCCGCTGTTG
CTGCTGATGGTGGTGCTGGTGCTGTTGCTCCTATCGCTCCTGCCGCTGCC
CCTGTTGCTGCCGCAGCCGCTCTTGGTAAAGCAGGGGGAAGGAACAATCC
GGAGCTGGAGAAGAAACATAACAGCACCGGCAAAAGCATCATGTATAGGA
GGAAAGACAAGGAGCTGAGTTTGCCAAACGACAGTGAAGAGACTCAGGAG
GCGGCGGACGAGGCAGCCAATAACCGTCCGGACACACCGAGGCAATCGAC
GCCCACTGCTGCTGCTGCTGCTGTTGCTGCTGCTGGGAATCATGAATATA
TGAAAGGAGGGGTGACAACACAATCTCCGGGGCATGGGTGGTCTTGCCGG
AGCTTTCGCAAGGGCCAGAACGGAATTTATGCGGTAGAGAATGCTTGAGG
GGTGAAATGATGGAAAGAGGGAATATGGTCTGTACAATGCTGATCAGGAG
AAAAACAAGGAATTGCGGAGAATATGAGATCAATGGTGGTCAAGGTCTGG
GCCTTTGTCATCTTCGTTTCGACAACATTTCCACAAACAAAAACAAATAG
AGAAAGAGGAGTATAGTCGCATCACTCATTTCAGCCCTATACATTGAGAG
AGTTATACAGAAGAATTCCAGCTTATTTCAGCCCTTATCCTTCTCATTCG
AGGGAGGTAAAATGTACATGCCACGGGAGGATGTGAGAAATGGACATGCA
CATATGTCACTGTGACAGGACAGACGAAACTATTACGAGCAAGAAAATAA
AACGTCGAAGAAACGGATCGGTAAAAAGGCGACTGGATCGAGAGGATTAC
AAACTGGGGAAGAGGAAATCAAGAATGTGGCGTGTTGTTTATTACCGTTT
GTCCCCAACAGCAGCATCGTGAGAGAAGATTAATTATTCATGTTGAGCCA
TTTTCCACCACCATGGAAATAAGAAAGTCTGTAGT back to topprotein sequence of NO05G04290.1 >NO05G04290.1-protein ID=NO05G04290.1-protein|Name=NO05G04290.1|organism=Nannochloropsis oceanica|type=polypeptide|length=600bp
MYVLEHSQLNPSLHKTGSAILDQEQAVQKNSMGQNEGMGQYEATDQQHQC
TEFPAERNFVRTLRHVADDASLLDRHYAPAYLRRARAYEAMGKLERAQEV
AMQALCLQPHNEEAFRKVQSLTRDIGLTDFGVGPSSEQLTKEGAGALVGW
SKEEQPAHWYRKETVEMMEKSLPYTVLHALELAIHARVSPEAVLKKKTRL
CIHLAGASSELEGFSDFGVLFDKLPHLEELQVVQIGWVGLVGPCKRFVSD
PQAPPPGLLVGETRRLGHGRRLRVQRWRGLYHDFLARASKHEFDGQGYLH
EAPDVVLLANPGLDFFFDCWAPTLACLRDAGYLTVLTGGNLDHSRKHHNL
ILQAMGVKFALHLRTSRFGIVHGQRACKNHNLCAFSGAAPLMPGRERQPS
TAEECGEVRALLQRLGLEMETEGRATMRLALLNQKATARNVAQMALASSK
SLTRSFCDEPAAAAAAVAADGGAGAVAPIAPAAAPVAAAAALGKAGGRNN
PELEKKHNSTGKSIMYRRKDKELSLPNDSEETQEAADEAANNRPDTPRQS
TPTAAAAAVAAAGNHEYMKGGVTTQSPGHGWSCRSFRKGQNGIYAVENA* back to topmRNA from alignment at chr5:1102291..1104948- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04290.1 ID=NO05G04290.1|Name=NO05G04290.1|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at chr5:1102291..1104948- (Nannochloropsis oceanica)
ACAGGCACGCAACAGGAATCTGCACCCGAAAGCCCAGCTTCTTCCGGTAT
GTATGTCCTAGAACACAGCCAGCTCAACCCCAGCCTCCACAAGACGGGCT
CGGCCATTCTCGACCAAGAACAAGCCGTCCAAAAAAATTCCATGGGACAG
AACGAGGGCATGGGACAGTACGAGGCCACGGATCAGCAGCACCAGGTACG
TGTGTGTAAGGCGCCTCCGGCCTTCAATATGCATCTGTTGTCATGGACGG
CCCTCAAACGGGCTGGTCGGAGTTCAAAGTATGGGTGTGAATTGGGAGGG
GACATGTCCAAGCTGTGCATTTCCCTGCCTCCTCCGCGTGCAAGTACTCT
TCTAGACCCCTGACTTTGCTTTGCCCGTGTATATGACCTATAACCTAAAT
CTCACTCATCTTTTCTGTTACGCCATCTCGCTCATGTTTTCGTCCCTACC
TCCACCCTCCTCCAAAAGTGCACCGAATTCCCTGCCGAGCGCAATTTCGT
GAGGACCTTACGCCATGTTGCCGATGATGCGTCGCTCCTCGACCGGCACT
ATGCTCCTGCCTACCTCCGCCGCGCGAGGGCCTATGAAGCGATGGGCAAG
CTTGAACGTGCCCAAGAAGTAGCCATGCAAGCCCTGTGCCTCCAACCACA
CAATGAGGAGGCCTTCCGAAAAGTCCAATCTTTAACACGAGATATAGGTT
TAACCGATTTTGGGGTTGGCCCATCCTCGGAGCAGTTGACAAAGGAGGGA
GCGGGGGCCTTGGTGGGTTGGTCGAAGGAAGAGCAGCCCGCGCATTGGTA
CCGGAAAGAGACTGTGGAGATGATGGAGAAATCATTGCCTTACACGGTGT
TGCATGCATTGGAGCTGGCGATTCACGCGCGTGTCTCACCCGAGGCAGTG
CTGAAGAAGAAGACGAGGTTGTGTATTCATCTCGCAGGCGCCTCATCGGA
ACTGGAGGGGTTTTCGGATTTTGGCGTCCTTTTCGATAAATTGCCTCATT
TGGAGGAGTTGCAAGTGGTACAAATCGGGTGGGTGGGATTGGTGGGGCCC
TGTAAACGTTTCGTGTCTGACCCGCAAGCCCCCCCTCCGGGATTGTTGGT
GGGGGAAACGCGGCGCCTAGGGCATGGACGGCGCTTGCGGGTGCAACGAT
GGAGGGGGTTGTACCATGATTTTTTGGCGAGGGCCTCCAAGCACGAATTT
GATGGTCAGGGGTATTTGCACGAGGCTCCGGATGTGGTGTTGCTTGCGAA
TCCGGGCTTGGATTTCTTCTTTGATTGCTGGGCGCCGACATTGGCATGTT
TGCGAGATGCGGGTTATTTGACAGTGTTGACGGGCGGGAACCTCGATCAT
TCTCGTAAGCACCATAATTTAATTCTGCAGGCAATGGGTGTCAAGTTTGC
CTTACACCTACGGACGTCGAGGTTTGGGATTGTCCATGGGCAGCGGGCTT
GTAAGAACCATAATTTGTGCGCATTCTCAGGGGCGGCACCTTTGATGCCC
GGGAGGGAACGACAACCGTCCACGGCGGAGGAATGTGGGGAGGTTAGGGC
GTTGTTGCAGCGGTTGGGGTTGGAAATGGAAACGGAGGGCAGGGCGACGA
TGCGCTTAGCGCTGTTGAACCAGAAGGCGACCGCGAGGAATGTGGCGCAG
ATGGCCCTGGCGTCGTCGAAGAGTTTGACACGGAGCTTTTGTGACGAGCC
TGCCGCAGCTGCTGCCGCTGTTGCTGCTGATGGTGGTGCTGGTGCTGTTG
CTCCTATCGCTCCTGCCGCTGCCCCTGTTGCTGCCGCAGCCGCTCTTGGT
AAAGCAGGGGGAAGGAACAATCCGGAGCTGGAGAAGAAACATAACAGCAC
CGGCAAAAGCATCATGTATAGGAGGAAAGACAAGGAGCTGAGTTTGCCAA
ACGACAGTGAAGAGACTCAGGAGGCGGCGGACGAGGCAGCCAATAACCGT
CCGGACACACCGAGGCAATCGACGCCCACTGCTGCTGCTGCTGCTGTTGC
TGCTGCTGGGAATCATGAATATATGAAAGGAGGGGTGACAACACAATCTC
CGGGGCATGGGTGGTCTTGCCGGAGCTTTCGCAAGGGCCAGAACGGAATT
TATGCGGTAGAGAATGCTTGAGGGGTGAAATGATGGAAAGAGGGAATATG
GTCTGTACAATGCTGATCAGGAGAAAAACAAGGAATTGCGGAGAATATGA
GATCAATGGTGGTCAAGGTCTGGGCCTTTGTCATCTTCGTTTCGACAACA
TTTCCACAAACAAAAACAAATAGAGAAAGAGGAGTATAGTCGCATCACTC
ATTTCAGCCCTATACATTGAGAGAGTTATACAGAAGAATTCCAGCTTATT
TCAGCCCTTATCCTTCTCATTCGAGGGAGGTAAAATGTACATGCCACGGG
AGGATGTGAGAAATGGACATGCACATATGTCACTGTGACAGGACAGACGA
AACTATTACGAGCAAGAAAATAAAACGTCGAAGAAACGGATCGGTAAAAA
GGCGACTGGATCGAGAGGATTACAAACTGGGGAAGAGGAAATCAAGAATG
TGGCGTGTTGTTTATTACCGTTTGTCCCCAACAGCAGCATCGTGAGAGAA
GATTAATTATTCATGTTGAGCCATTTTCCACCACCATGGAAATAAGAAAG
TCTGTAGT back to topCoding sequence (CDS) from alignment at chr5:1102291..1104948- >NO05G04290.1 ID=NO05G04290.1|Name=NO05G04290.1|organism=Nannochloropsis oceanica|type=CDS|length=1800bp|location=Sequence derived from alignment at chr5:1102291..1104948- (Nannochloropsis oceanica)
ATGTATGTCCTAGAACACAGCCAGCTCAACCCCAGCCTCCACAAGACGGG
CTCGGCCATTCTCGACCAAGAACAAGCCGTCCAAAAAAATTCCATGGGAC
AGAACGAGGGCATGGGACAGTACGAGGCCACGGATCAGCAGCACCAGTGC
ACCGAATTCCCTGCCGAGCGCAATTTCGTGAGGACCTTACGCCATGTTGC
CGATGATGCGTCGCTCCTCGACCGGCACTATGCTCCTGCCTACCTCCGCC
GCGCGAGGGCCTATGAAGCGATGGGCAAGCTTGAACGTGCCCAAGAAGTA
GCCATGCAAGCCCTGTGCCTCCAACCACACAATGAGGAGGCCTTCCGAAA
AGTCCAATCTTTAACACGAGATATAGGTTTAACCGATTTTGGGGTTGGCC
CATCCTCGGAGCAGTTGACAAAGGAGGGAGCGGGGGCCTTGGTGGGTTGG
TCGAAGGAAGAGCAGCCCGCGCATTGGTACCGGAAAGAGACTGTGGAGAT
GATGGAGAAATCATTGCCTTACACGGTGTTGCATGCATTGGAGCTGGCGA
TTCACGCGCGTGTCTCACCCGAGGCAGTGCTGAAGAAGAAGACGAGGTTG
TGTATTCATCTCGCAGGCGCCTCATCGGAACTGGAGGGGTTTTCGGATTT
TGGCGTCCTTTTCGATAAATTGCCTCATTTGGAGGAGTTGCAAGTGGTAC
AAATCGGGTGGGTGGGATTGGTGGGGCCCTGTAAACGTTTCGTGTCTGAC
CCGCAAGCCCCCCCTCCGGGATTGTTGGTGGGGGAAACGCGGCGCCTAGG
GCATGGACGGCGCTTGCGGGTGCAACGATGGAGGGGGTTGTACCATGATT
TTTTGGCGAGGGCCTCCAAGCACGAATTTGATGGTCAGGGGTATTTGCAC
GAGGCTCCGGATGTGGTGTTGCTTGCGAATCCGGGCTTGGATTTCTTCTT
TGATTGCTGGGCGCCGACATTGGCATGTTTGCGAGATGCGGGTTATTTGA
CAGTGTTGACGGGCGGGAACCTCGATCATTCTCGTAAGCACCATAATTTA
ATTCTGCAGGCAATGGGTGTCAAGTTTGCCTTACACCTACGGACGTCGAG
GTTTGGGATTGTCCATGGGCAGCGGGCTTGTAAGAACCATAATTTGTGCG
CATTCTCAGGGGCGGCACCTTTGATGCCCGGGAGGGAACGACAACCGTCC
ACGGCGGAGGAATGTGGGGAGGTTAGGGCGTTGTTGCAGCGGTTGGGGTT
GGAAATGGAAACGGAGGGCAGGGCGACGATGCGCTTAGCGCTGTTGAACC
AGAAGGCGACCGCGAGGAATGTGGCGCAGATGGCCCTGGCGTCGTCGAAG
AGTTTGACACGGAGCTTTTGTGACGAGCCTGCCGCAGCTGCTGCCGCTGT
TGCTGCTGATGGTGGTGCTGGTGCTGTTGCTCCTATCGCTCCTGCCGCTG
CCCCTGTTGCTGCCGCAGCCGCTCTTGGTAAAGCAGGGGGAAGGAACAAT
CCGGAGCTGGAGAAGAAACATAACAGCACCGGCAAAAGCATCATGTATAG
GAGGAAAGACAAGGAGCTGAGTTTGCCAAACGACAGTGAAGAGACTCAGG
AGGCGGCGGACGAGGCAGCCAATAACCGTCCGGACACACCGAGGCAATCG
ACGCCCACTGCTGCTGCTGCTGCTGTTGCTGCTGCTGGGAATCATGAATA
TATGAAAGGAGGGGTGACAACACAATCTCCGGGGCATGGGTGGTCTTGCC
GGAGCTTTCGCAAGGGCCAGAACGGAATTTATGCGGTAGAGAATGCTTGA back to top
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