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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1091934..1093766 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04240.1 vs.
Match: EWM28001.1 (protein of unknown function DUF1336 [Nannochloropsis gaditana]) HSP 1 Score: 280.8 bits (717), Expect = 7.000e-72 Identity = 149/282 (52.84%), Postives = 190/282 (67.38%), Query Frame = 0
Query: 2 MKNSATTLLVPGSTVPSASIHSLDHLTTASTTATLDYRQDGNRN----AEDQNITQQTSTPASE---LLKYFPSSPAPPRHTWEGTPASAFNVRGPAYKRTGRKQPSLDSFYSLVSFDFVKTSAGCVNHVARFMGLELLRPARCYPGFPPLFIVNTLLPDGEPAIFSSVEGGPSRSAIFVFALKASTVDLLEKHMQEQEQG--EGKGERGRGREALPPSLLLLQDYFRRAPYDAEVRGRFKVIASCANLDGLNLPSFISNYNGKPVLITNSGRLFQGYSSSS 275
+++ T +L+PGST+ + LD +T + T+ + + D N +Q + P + +P + A PRH+W T AS+F VR YKR +K+PSL++FY LVSFD +K S GCVNHV R M LE +RPAR +PG PPLFIVNT LPDGEPA+F++ + GP RSAIFVFALK STVD+LE H E KG+ R ++PP+L LLQ+YFRRAP+D +VRGR KVIASCAN+D L+LPSFISNYNGKPVLIT SGRL QG SSS+
Sbjct: 43 LQSQETVMLIPGSTIRGTAFSPLDDVTARIASCTVIDEDSAHVQPGAVSNDGNSSQTCNIPGHSDRATISSYPPALALPRHSWGHTSASSFRVRSRHYKRAKKKEPSLEAFYKLVSFDLIKASVGCVNHVGRLMDLEKVRPARSFPGLPPLFIVNTQLPDGEPAMFNASDNGPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSN 324
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp ACATCAGACAGCACTCGCGGAGCCGCCTTTCTCATGCGTACCCTTCCACG CACTGGACACCAATCGGCGAGAAGCGAATAACCAATATATTGTCTTGAGC TTGGCCTGGGCCGGCAACTCTCCCGCACTTCAGTGCCTTGTCGTCGTCAT CTACCACCAGCACCAGCACCACAACCACCGCTAGCATCATAAGCTCCATC ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT GAGGAAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAG TGGGAGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAA GGAATTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCT GCTACTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGA AGGGTGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAA AAGAATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATA TTCACAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAA ATATTTGAAGCAGAAAGAACGCGTCGCTGTTTA back to topprotein sequence of NO05G04240.1 >NO05G04240.1-protein ID=NO05G04240.1-protein|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp MMKNSATTLLVPGSTVPSASIHSLDHLTTASTTATLDYRQDGNRNAEDQN ITQQTSTPASELLKYFPSSPAPPRHTWEGTPASAFNVRGPAYKRTGRKQP SLDSFYSLVSFDFVKTSAGCVNHVARFMGLELLRPARCYPGFPPLFIVNT LLPDGEPAIFSSVEGGPSRSAIFVFALKASTVDLLEKHMQEQEQGEGKGE RGRGREALPPSLLLLQDYFRRAPYDAEVRGRFKVIASCANLDGLNLPSFI SNYNGKPVLITNSGRLFQGYSSSSSSSSSSSSSPSFSSSSPISLSYPSFP TTINTTTTISPSCSSSSFSCPSSSSFLTSSSGSSSSPLSTSSSELLYLEM DVNVHCFAFLAKKGLKYLKTKFPSMVLEMAFLIEGGRDEELPEQVLGAAR LNFMEYEKAVDGVFDGLRKEEREG* back to topmRNA from alignment at chr5:1091934..1093766- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr5:1091934..1093766- (Nannochloropsis oceanica) ACATCAGACAGCACTCGCGGAGCCGCCTTTCTCATGCGTACCCTTCCACG
CACTGGACACCAATCGGCGAGAAGCGAATAACCAATATATTGTCTTGAGC
TTGGCCTGGGCCGGCAACTCTCCCGCACTTCAGTGCCTTGTCGTCGTCAT
CTACCACCAGCACCAGCACCACAACCACCGCTAGCATCATAAGCTCCATC
ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC
ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG
CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC
ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC
CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG
CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG
TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC
AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC
GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC
CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC
CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT
TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA
AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA
TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG
TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC
TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT
CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC
CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC
ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC
CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT
CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG
GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA
CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG
AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG
TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT
GAGGAAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAG
TGGGAGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAA
GGAATTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCT
GCTACTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGA
AGGGTGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAA
AAGAATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATA
TTCACAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAA
ATATTTGAAGCAGAAAGAACGCGTCGCTGTTTA back to topCoding sequence (CDS) from alignment at chr5:1091934..1093766- >NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr5:1091934..1093766- (Nannochloropsis oceanica) ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT GAGGAAAGAGGAGAGAGAGGGCTAG back to top
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