NO05G04240.1, NO05G04240.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04240.1
Unique NameNO05G04240.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1833
Alignment locationchr5:1091934..1093766 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1091934..1093766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04240.1 vs.
Match: EWM28001.1 (protein of unknown function DUF1336 [Nannochloropsis gaditana])

HSP 1 Score: 280.8 bits (717), Expect = 7.000e-72
Identity = 149/282 (52.84%), Postives = 190/282 (67.38%), Query Frame = 0
Query:    2 MKNSATTLLVPGSTVPSASIHSLDHLTTASTTATLDYRQDGNRN----AEDQNITQQTSTPASE---LLKYFPSSPAPPRHTWEGTPASAFNVRGPAYKRTGRKQPSLDSFYSLVSFDFVKTSAGCVNHVARFMGLELLRPARCYPGFPPLFIVNTLLPDGEPAIFSSVEGGPSRSAIFVFALKASTVDLLEKHMQEQEQG--EGKGERGRGREALPPSLLLLQDYFRRAPYDAEVRGRFKVIASCANLDGLNLPSFISNYNGKPVLITNSGRLFQGYSSSS 275
            +++  T +L+PGST+   +   LD +T    + T+      +      + D N +Q  + P       +  +P + A PRH+W  T AS+F VR   YKR  +K+PSL++FY LVSFD +K S GCVNHV R M LE +RPAR +PG PPLFIVNT LPDGEPA+F++ + GP RSAIFVFALK STVD+LE H         E KG+  R   ++PP+L LLQ+YFRRAP+D +VRGR KVIASCAN+D L+LPSFISNYNGKPVLIT SGRL QG SSS+
Sbjct:   43 LQSQETVMLIPGSTIRGTAFSPLDDVTARIASCTVIDEDSAHVQPGAVSNDGNSSQTCNIPGHSDRATISSYPPALALPRHSWGHTSASSFRVRSRHYKRAKKKEPSLEAFYKLVSFDLIKASVGCVNHVGRLMDLEKVRPARSFPGLPPLFIVNTQLPDGEPAMFNASDNGPGRSAIFVFALKESTVDMLEAHADSPSAAVRERKGKDHREAFSVPPALQLLQEYFRRAPHDPDVRGRLKVIASCANMDALHLPSFISNYNGKPVLITKSGRLHQGISSSN 324          
The following BLAST results are available for this feature:
BLAST of NO05G04240.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28001.17.000e-7252.84protein of unknown function DUF1336 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04240NO05G04240Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04240.1NO05G04240.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04240.1.cds1NO05G04240.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp
ACATCAGACAGCACTCGCGGAGCCGCCTTTCTCATGCGTACCCTTCCACG
CACTGGACACCAATCGGCGAGAAGCGAATAACCAATATATTGTCTTGAGC
TTGGCCTGGGCCGGCAACTCTCCCGCACTTCAGTGCCTTGTCGTCGTCAT
CTACCACCAGCACCAGCACCACAACCACCGCTAGCATCATAAGCTCCATC
ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC
ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG
CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC
ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC
CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG
CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG
TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC
AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC
GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC
CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC
CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT
TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA
AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA
TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG
TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC
TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT
CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC
CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC
ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC
CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT
CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG
GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA
CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG
AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG
TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT
GAGGAAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAG
TGGGAGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAA
GGAATTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCT
GCTACTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGA
AGGGTGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAA
AAGAATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATA
TTCACAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAA
ATATTTGAAGCAGAAAGAACGCGTCGCTGTTTA
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protein sequence of NO05G04240.1

>NO05G04240.1-protein ID=NO05G04240.1-protein|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=polypeptide|length=425bp
MMKNSATTLLVPGSTVPSASIHSLDHLTTASTTATLDYRQDGNRNAEDQN
ITQQTSTPASELLKYFPSSPAPPRHTWEGTPASAFNVRGPAYKRTGRKQP
SLDSFYSLVSFDFVKTSAGCVNHVARFMGLELLRPARCYPGFPPLFIVNT
LLPDGEPAIFSSVEGGPSRSAIFVFALKASTVDLLEKHMQEQEQGEGKGE
RGRGREALPPSLLLLQDYFRRAPYDAEVRGRFKVIASCANLDGLNLPSFI
SNYNGKPVLITNSGRLFQGYSSSSSSSSSSSSSPSFSSSSPISLSYPSFP
TTINTTTTISPSCSSSSFSCPSSSSFLTSSSGSSSSPLSTSSSELLYLEM
DVNVHCFAFLAKKGLKYLKTKFPSMVLEMAFLIEGGRDEELPEQVLGAAR
LNFMEYEKAVDGVFDGLRKEEREG*
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mRNA from alignment at chr5:1091934..1093766-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=mRNA|length=1833bp|location=Sequence derived from alignment at chr5:1091934..1093766- (Nannochloropsis oceanica)
ACATCAGACAGCACTCGCGGAGCCGCCTTTCTCATGCGTACCCTTCCACG CACTGGACACCAATCGGCGAGAAGCGAATAACCAATATATTGTCTTGAGC TTGGCCTGGGCCGGCAACTCTCCCGCACTTCAGTGCCTTGTCGTCGTCAT CTACCACCAGCACCAGCACCACAACCACCGCTAGCATCATAAGCTCCATC ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT GAGGAAAGAGGAGAGAGAGGGCTAGGGGGAGGGAGGGGGAGGAGGAAGAG TGGGAGGAGATGGAGGGAGATGAAGGACTTGTAGTGAGGATTTGGTAGAA GGAATTCGATACCTAGCAGGCGATAAGTGGCCGTATCTGCAGCTGCTGCT GCTACTGCTGCTGCTGCTGCTGTGTGAGAGGTAAGTGTATGGATAAATGA AGGGTGACGGGGAAAGCAGTGGTGTATTCTGTCGAGAGGGCGAGGAGGAA AAGAATGAGACGAGGAGGGAAAGAGGGTCGGGACTTATTTTTTTGGTATA TTCACAAAGTCGCAAGCAGCATGTACAGGAAAAGCAAGGAAATCAGAGAA ATATTTGAAGCAGAAAGAACGCGTCGCTGTTTA
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Coding sequence (CDS) from alignment at chr5:1091934..1093766-

>NO05G04240.1 ID=NO05G04240.1|Name=NO05G04240.1|organism=Nannochloropsis oceanica|type=CDS|length=1275bp|location=Sequence derived from alignment at chr5:1091934..1093766- (Nannochloropsis oceanica)
ATGATGAAAAACAGTGCGACTACATTACTTGTGCCGGGATCCACTGTGCC
ATCGGCCTCAATTCACTCCCTGGATCACCTGACCACGGCCTCTACCACTG
CCACCCTGGACTATAGACAAGACGGCAATCGCAATGCCGAGGACCAAAAC
ATCACACAGCAAACATCAACACCTGCGTCTGAGCTTTTGAAATATTTTCC
CTCCTCTCCTGCACCCCCGAGACACACCTGGGAGGGCACGCCTGCCTCGG
CCTTTAATGTCCGCGGACCCGCATACAAGCGCACAGGGCGAAAACAACCG
TCGCTCGATTCGTTTTACAGCTTGGTTTCCTTCGACTTTGTCAAAACATC
AGCAGGCTGCGTCAATCACGTTGCACGTTTCATGGGCTTGGAACTATTGC
GTCCAGCCAGGTGCTACCCTGGGTTTCCTCCTCTCTTTATCGTCAACACC
CTATTGCCTGATGGCGAGCCGGCCATATTTAGTAGCGTTGAGGGTGGGCC
CAGCCGAAGTGCGATCTTTGTGTTTGCTTTGAAGGCGTCCACCGTGGACT
TGCTTGAGAAACACATGCAGGAGCAGGAGCAAGGGGAGGGAAAGGGAGAA
AGGGGAAGAGGTAGGGAAGCATTGCCTCCATCTCTATTGCTCTTGCAAGA
TTATTTTCGAAGGGCACCGTACGATGCGGAGGTGCGGGGGAGGTTTAAGG
TTATTGCCAGTTGTGCAAATCTGGATGGATTGAATTTACCTTCTTTCATC
TCCAATTATAATGGTAAACCAGTCTTGATCACTAACAGTGGTCGCCTCTT
CCAGGGCTACTCCTCCTCGTCCTCCTCGTCCTCCTCCTCGTCCTCCTCCC
CCTCCTTTTCTTCTTCCTCTCCTATATCTCTCTCCTACCCTTCTTTTCCC
ACAACCATTAATACCACCACCACAATCTCCCCCTCCTGCTCCTCCTCCTC
CTTCTCCTGCCCCTCCTCCTCCTCCTTTTTAACCTCCTCCTCTGGTTCCT
CCTCCTCCCCTCTCTCTACTTCCTCGTCTGAATTGCTTTACCTAGAAATG
GACGTCAACGTCCATTGTTTCGCGTTCCTGGCCAAGAAGGGGCTCAAATA
CTTAAAAACGAAGTTCCCCTCCATGGTGCTAGAAATGGCGTTTCTGATCG
AGGGCGGAAGAGATGAAGAGTTGCCAGAGCAAGTGTTGGGAGCAGCGAGG
TTGAATTTTATGGAATACGAGAAGGCGGTGGATGGGGTGTTTGACGGATT
GAGGAAAGAGGAGAGAGAGGGCTAG
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Synonyms
Publications