NO05G04230.1, NO05G04230.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04230.1
Unique NameNO05G04230.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length764
Alignment locationchr5:1089832..1090595 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1089832..1090595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G04230.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04230NO05G04230Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04230.1NO05G04230.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04230.1.cds1NO05G04230.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04230.1 ID=NO05G04230.1|Name=NO05G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=764bp
AAGGTTATGCCCGTTGGGCCAGAGTCTTTTCCTATACTCCTTGTCGTCGC
GAGGGACTTTTCTGTCCTCCATCGATTGGATTGTAAATTTTACTGTGCCA
TAGATATCACTTTCGAATAGCATGTCACACACACACTGACGTCTCGTTTG
CTTTAACCCAGCCAAATCAACCCCCCATTCTCTCACCCTGTCTCTCCCTG
CGTTTCCTCACCAACATCCATTCTAAACGACATTGAGGCATTTCACAACG
CCATCCCCGTGCTTAAAACCCTACTCTGCATCGATCCCTGGCCATGTTCT
TTTCTGCTGCGTACCACGAACAAATGCAGGAGAAGGGGGAGGAGGAAGGG
ATAGGGGAGGAGAGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGCGGAGGC
GGAGGCGGAGGCGGAGGATGAGGTGGAGGACGAGGCAGAGGAGGAGGAGG
TCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAACAGT
TCGTGTCTCGGGACGGCAAAGGGGCACGTAACATCCTGCGGGTGTACAGG
AGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGATTTGGTCAACC
GCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGTTGACCTCCTC
TTTAATCCTCCTTCCCCCTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGG
ACTTTGTCTGGTCAAAAAACCTGTTAAAGTCGCTAGTAAAACTCGGACAA
TGAATAAGGGGTGA
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protein sequence of NO05G04230.1

>NO05G04230.1-protein ID=NO05G04230.1-protein|Name=NO05G04230.1|organism=Nannochloropsis oceanica|type=polypeptide|length=157bp
MFFSAAYHEQMQEKGEEEGIGEERAEAVEAEEEAEAEAEAEDEVEDEAEE
EEVMGGPSEDCIGVTPVNSSCLGTAKGHVTSCGCTGVWSVEKLVPMIFDL
VNRGKICGHSMCSVPVDLLFNPPSPSPPGPVWAVRGLCLVKKPVKVASKT
RTMNKG*
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mRNA from alignment at chr5:1089832..1090595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04230.1 ID=NO05G04230.1|Name=NO05G04230.1|organism=Nannochloropsis oceanica|type=mRNA|length=764bp|location=Sequence derived from alignment at chr5:1089832..1090595+ (Nannochloropsis oceanica)
AAGGTTATGCCCGTTGGGCCAGAGTCTTTTCCTATACTCCTTGTCGTCGC
GAGGGACTTTTCTGTCCTCCATCGATTGGATTGTAAATTTTACTGTGCCA
TAGATATCACTTTCGAATAGCATGTCACACACACACTGACGTCTCGTTTG
CTTTAACCCAGCCAAATCAACCCCCCATTCTCTCACCCTGTCTCTCCCTG
CGTTTCCTCACCAACATCCATTCTAAACGACATTGAGGCATTTCACAACG
CCATCCCCGTGCTTAAAACCCTACTCTGCATCGATCCCTGGCCATGTTCT
TTTCTGCTGCGTACCACGAACAAATGCAGGAGAAGGGGGAGGAGGAAGGG
ATAGGGGAGGAGAGGGCGGAGGCGGTGGAAGCAGAGGAGGAGGCGGAGGC
GGAGGCGGAGGCGGAGGATGAGGTGGAGGACGAGGCAGAGGAGGAGGAGG
TCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGTGAACAGT
TCGTGTCTCGGGACGGCAAAGGGGCACGTAACATCCTGCGGGTGTACAGG
AGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGATTTGGTCAACC
GCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGTTGACCTCCTC
TTTAATCCTCCTTCCCCCTCTCCTCCTGGCCCTGTGTGGGCCGTCCGGGG
ACTTTGTCTGGTCAAAAAACCTGTTAAAGTCGCTAGTAAAACTCGGACAA
TGAATAAGGGGTGA
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Coding sequence (CDS) from alignment at chr5:1089832..1090595+

>NO05G04230.1 ID=NO05G04230.1|Name=NO05G04230.1|organism=Nannochloropsis oceanica|type=CDS|length=471bp|location=Sequence derived from alignment at chr5:1089832..1090595+ (Nannochloropsis oceanica)
ATGTTCTTTTCTGCTGCGTACCACGAACAAATGCAGGAGAAGGGGGAGGA
GGAAGGGATAGGGGAGGAGAGGGCGGAGGCGGTGGAAGCAGAGGAGGAGG
CGGAGGCGGAGGCGGAGGCGGAGGATGAGGTGGAGGACGAGGCAGAGGAG
GAGGAGGTCATGGGCGGGCCATCCGAGGACTGTATTGGTGTGACACCTGT
GAACAGTTCGTGTCTCGGGACGGCAAAGGGGCACGTAACATCCTGCGGGT
GTACAGGAGTATGGTCCGTGGAGAAGCTCGTCCCCATGATCTTCGATTTG
GTCAACCGCGGCAAGATATGCGGACACTCTATGTGTAGCGTTCCCGTTGA
CCTCCTCTTTAATCCTCCTTCCCCCTCTCCTCCTGGCCCTGTGTGGGCCG
TCCGGGGACTTTGTCTGGTCAAAAAACCTGTTAAAGTCGCTAGTAAAACT
CGGACAATGAATAAGGGGTGA
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Synonyms
Publications