NO05G04210.1, NO05G04210.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04210.1
Unique NameNO05G04210.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1925
Alignment locationchr5:1086467..1088780 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1086467..1088780 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04210.1 vs.
Match: EWM28013.1 (mg-protoporphyrin ix methyl transferase [Nannochloropsis gaditana])

HSP 1 Score: 478.4 bits (1230), Expect = 1.600e-131
Identity = 240/274 (87.59%), Postives = 254/274 (92.70%), Query Frame = 0 
Query:   24 MKTALVLITTAASLSCTLAFVPLVPVNQRQRSAVRMMAATKPKPPTGGVDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLEADGVKGESICDAGCGVGSLAIPMAKLGAKVSASDISSSMANEGKLRAEAVLGKATARARCAFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKQIGGLFPGPSKTTRAYLHTEADVRKALEEAGFTVKRTDMTATNFYFSRLLEAV 298
            M+T LV +  AA+LSC  AFVP VP  Q QRS  R+MAATKPK  + G DDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWL+ADGVKGESICDAGCGVGSLAIPMA+LGAKV+ASDISSSMANEG+ RAEAVLGKATARARC+FSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILK+IG LFPGPSKTTRAYLHTE DVRKAL+ AGFTV+RT+MTATNFYFSRLLEAV
Sbjct:    1 MRTTLVAVAAAATLSCAFAFVPFVPARQTQRSTTRIMAATKPKVTSVGTDDKTEVREYFNTEGFQRWNRIYSEDGTVNKVQADIRVGHQQTVDKILGWLQADGVKGESICDAGCGVGSLAIPMAELGAKVAASDISSSMANEGRQRAEAVLGKATARARCSFSTSDLEALKGKYDTVTCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKKIGELFPGPSKTTRAYLHTEEDVRKALKAAGFTVRRTEMTATNFYFSRLLEAV 274
The following BLAST results are available for this feature:
BLAST of NO05G04210.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28013.11.600e-13187.59mg-protoporphyrin ix methyl transferase [Nannochlo... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04210NO05G04210Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04210.1NO05G04210.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04210.1.cds1NO05G04210.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04210.1.cds2NO05G04210.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04210.1 ID=NO05G04210.1|Name=NO05G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1925bp
CGAAACTGTCTGTGCAAGAGAATAGGACGGGGAAAATGGGTCAGATAAGG
CGTTAAGCGTGTTTCTCCGCGTGCAAGTGCTAACGTGTACGCCTCCGATA
ACGGAAGCTTGGGATTATGGGGGCCAACAAAGCAAGAAGGCAGACCAGAG
AAGGAGCGTGGTCTTTCCTTGGGGAGGCCAGAGTGCGGCAACTTTCACCT
TGGCAAACGCAAACGGGAGAAGGCCAAACCTCACAGAATATACTCCACCA
AAACCTGCTCGATCTACCATTCCCTTCGCACTGTCGGAGGAGGGCGAGTA
AGGGGATGTTTCTGAGTGGGTTTCGAAGGAACAATCTGCACTATATTACG
AACAACGACGCAGTCGCGCCAAAATCGGATCCCCATACGGTAACAAGCCT
TCCCCAACCCGCACCCTCACTCTCAGACCGAAAGCAAAGCACCATACTCA
GAAGAGCCAACGTAGATCATACCCAATAGACTGGAGCATGAAGGCCTCAC
GGCTTGTCCTGGGGAGAAGAATGAGATAATAAATTCGACCCCCAACCCCC
CACCAAAAAGCAAGCAATATCTTGCACATTGCATCGTGCCATGATGTTCC
TGCGTCGATGCATTATGTCCGAGCCACGTTTAATCCACATGTGTGTTTCT
CTGTCTCACTGGTTTCCATCTAACACAACTCATGTCTGCCTCCCAGCAAC
AGGATCACCGCCTCCTCCCGTCGTTGACCTTCCCCATCTACAGAATCACC
ATGAAGACTGCTCTCGTGCTCATAACGACTGCTGCCTCCCTCAGCTGCAC
GCTGGCCTTTGTGCCGCTTGTCCCTGTTAATCAGCGGCAAAGATCAGCTG
TCCGCATGATGGCCGCCACGAAACCCAAGCCCCCGACCGGCGGCGTGGAC
GACAAGACCGAAGTCCGCGAATACTTTAACACCGAGGGGTTCCAACGCTG
GAACCGCATATACAGCGAAGATGGGACAGTGAACAAGGTGCAAGCAGACA
TTCGTGTGGGGCACCAACAAACCGTCGATAAAATCTTGGGGTGGCTCGAA
GCGGACGGAGTGAAGGGGGAGAGCATTTGCGATGCAGGCTGTGGGGTCGG
GTCCTTGGCCATTCCCATGGCTAAGCTTGGAGCCAAGGTCTCAGCGTCGG
ATATCAGTTCCTCGATGGCAAACGAGGGAAAGCTGAGGGCTGAGGCCGTG
TTGGGGAAGGCTACGGCCAGGGCGCGTTGTGCGTTCTCAACCAGTGACTT
GGAGGCATTAAAGGGGAAATACGACACCGTGACCTGTGTGGATGTGATGA
TTCACTATCCCACTGACAAGATGCAGGGGATGGTGAGCAAGCTGGGTTCA
TTGGCAAAGAAGAGGATGATTATTTCTTTTGCTCCCAAGACTTGGTACTA
CGACATCTTGAAGCAGATCGGTGGGCTTTTCCCCGGGCCGAGTAAAACAA
CCCGTGCGTATTTGCACACCGAGGCAGATGTTCGCAAGGCTTTGGAAGAG
GCAGGATTCACGGTGAAGCGTACGGACATGACGGCGACCAACTTTTATTT
TTCGCGGTTGTTGGAGGCGGTGCGTGAATAAAGTGGAAGGAGAGAGTCAA
AGCCTTGGGTTAGGCGGGGGAAGATGGACGAATGGAAGGAAAAGGGCGGG
GGGAGGGGGGATTGCCTTGACAATTTTGAAAGGGGAGACACCAGATGCTC
CAGATTAAGACAGAAAAAAAAGGGGATGGGCATCGTGCTTGTGCAGGCCG
ATGGGTAGGATGGAGGAAGGGGGATAGAGTAGAGGAGATGCGGGCCAGGA
AGGCAGGGACAATCAATTGCTTCACAAAGCATGTCACCAACTAAATTACT
ACAAGCATTCAGCTGCATTAAAAAATGGACACCTTTTGATGTTGCTGAAT
ATCATTTCTCGTACGTTTCGCTGCC
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protein sequence of NO05G04210.1

>NO05G04210.1-protein ID=NO05G04210.1-protein|Name=NO05G04210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MSASQQQDHRLLPSLTFPIYRITMKTALVLITTAASLSCTLAFVPLVPVN
QRQRSAVRMMAATKPKPPTGGVDDKTEVREYFNTEGFQRWNRIYSEDGTV
NKVQADIRVGHQQTVDKILGWLEADGVKGESICDAGCGVGSLAIPMAKLG
AKVSASDISSSMANEGKLRAEAVLGKATARARCAFSTSDLEALKGKYDTV
TCVDVMIHYPTDKMQGMVSKLGSLAKKRMIISFAPKTWYYDILKQIGGLF
PGPSKTTRAYLHTEADVRKALEEAGFTVKRTDMTATNFYFSRLLEAVRE*
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mRNA from alignment at chr5:1086467..1088780-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04210.1 ID=NO05G04210.1|Name=NO05G04210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2314bp|location=Sequence derived from alignment at chr5:1086467..1088780- (Nannochloropsis oceanica)
CGAAACTGTCTGTGCAAGAGAATAGGACGGGGAAAATGGGTCAGATAAGG
CGTTAAGCGTGTTTCTCCGCGTGCAAGTGCTAACGTGTACGCCTCCGATA
ACGGAAGCTTGGGATTATGGGGGCCAACAAAGCAAGAAGGCAGACCAGAG
AAGGAGCGTGGTCTTTCCTTGGGGAGGCCAGAGTGCGGCAACTTTCACCT
TGGCAAACGCAAACGGGAGAAGGCCAAACCTCACAGAATATACTCCACCA
AAACCTGCTCGATCTACCATTCCCTTCGCACTGTCGGAGGAGGGCGAGTA
AGGGGATGTTTCTGAGTGGGTTTCGAAGGAACAATCTGCACTATATTACG
AACAACGACGCAGTCGCGCCAAAATCGGATCCCCATACGGTAACAAGCCT
TCCCCAACCCGCACCCTCACTCTCAGACCGAAAGCAAAGCACCATACTCA
GAAGAGCCAACGTAGATCATACCCAATAGACTGGAGCATGAAGGCCTCAC
GGCTTGTCCTGGGGAGAAGAATGAGATAATAAATTCGACCCCCAACCCCC
CACCAAAAAGCAAGCAATATCTTGCACATTGCATCGTGCCATGATGTTCC
TGCGTCGATGCATTATGTCCGAGCCACGTTTAATCCACATGTGTGTTTCT
CTGTCTCACTGGTTTCCATCTAACACAACTCATGTCTGCCTCCCAGCAAC
AGGATCACCGCCTCCTCCCGTCGTTGACCTTCCCCATCTACAGAATCACC
ATGAAGACTGCTCTCGTGCTCATAACGACTGCTGCCTCCCTCAGCTGCAC
GCTGGCCTTTGTGCCGCTTGTCCCTGTTAATCAGCGGCAAAGATCAGCTG
TCCGGTACGTGAAGATGATGAAGAGATGGTTGAAGGGCAGAGAAGTGCCA
GAGGGAATGGTTCAGCAAGAAACCTCGACTTAGCAAGCATGAAAGTAAAG
TTCGATCTATCCCCCAGAACTGGCATTGTAAGGGCTACCAAACGCGTTTG
TGTGATACTGAAAGGCGAAGTGTAACATAACGCTTCTCCTCCTCATGGTC
TAACGCTGCCGTGCTTCATATTCATTGTTTGTGCGAGTGGGAGGGCTCGG
AACAAATAGCCCTGCCTCGGTTCGATCTATTGCTAGTCAGCCAACATTCC
CCATATAAGACCTGAAAGCCCTCTTCAAAACTCCCTCAGTCTCATCCCAA
ATCACTCACTGCTTTTATCTTTGATATCTCTGCCTAATCGCAGCATGATG
GCCGCCACGAAACCCAAGCCCCCGACCGGCGGCGTGGACGACAAGACCGA
AGTCCGCGAATACTTTAACACCGAGGGGTTCCAACGCTGGAACCGCATAT
ACAGCGAAGATGGGACAGTGAACAAGGTGCAAGCAGACATTCGTGTGGGG
CACCAACAAACCGTCGATAAAATCTTGGGGTGGCTCGAAGCGGACGGAGT
GAAGGGGGAGAGCATTTGCGATGCAGGCTGTGGGGTCGGGTCCTTGGCCA
TTCCCATGGCTAAGCTTGGAGCCAAGGTCTCAGCGTCGGATATCAGTTCC
TCGATGGCAAACGAGGGAAAGCTGAGGGCTGAGGCCGTGTTGGGGAAGGC
TACGGCCAGGGCGCGTTGTGCGTTCTCAACCAGTGACTTGGAGGCATTAA
AGGGGAAATACGACACCGTGACCTGTGTGGATGTGATGATTCACTATCCC
ACTGACAAGATGCAGGGGATGGTGAGCAAGCTGGGTTCATTGGCAAAGAA
GAGGATGATTATTTCTTTTGCTCCCAAGACTTGGTACTACGACATCTTGA
AGCAGATCGGTGGGCTTTTCCCCGGGCCGAGTAAAACAACCCGTGCGTAT
TTGCACACCGAGGCAGATGTTCGCAAGGCTTTGGAAGAGGCAGGATTCAC
GGTGAAGCGTACGGACATGACGGCGACCAACTTTTATTTTTCGCGGTTGT
TGGAGGCGGTGCGTGAATAAAGTGGAAGGAGAGAGTCAAAGCCTTGGGTT
AGGCGGGGGAAGATGGACGAATGGAAGGAAAAGGGCGGGGGGAGGGGGGA
TTGCCTTGACAATTTTGAAAGGGGAGACACCAGATGCTCCAGATTAAGAC
AGAAAAAAAAGGGGATGGGCATCGTGCTTGTGCAGGCCGATGGGTAGGAT
GGAGGAAGGGGGATAGAGTAGAGGAGATGCGGGCCAGGAAGGCAGGGACA
ATCAATTGCTTCACAAAGCATGTCACCAACTAAATTACTACAAGCATTCA
GCTGCATTAAAAAATGGACACCTTTTGATGTTGCTGAATATCATTTCTCG
TACGTTTCGCTGCC
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Coding sequence (CDS) from alignment at chr5:1086467..1088780-

>NO05G04210.1 ID=NO05G04210.1|Name=NO05G04210.1|organism=Nannochloropsis oceanica|type=CDS|length=900bp|location=Sequence derived from alignment at chr5:1086467..1088780- (Nannochloropsis oceanica)
ATGTCTGCCTCCCAGCAACAGGATCACCGCCTCCTCCCGTCGTTGACCTT
CCCCATCTACAGAATCACCATGAAGACTGCTCTCGTGCTCATAACGACTG
CTGCCTCCCTCAGCTGCACGCTGGCCTTTGTGCCGCTTGTCCCTGTTAAT
CAGCGGCAAAGATCAGCTGTCCGCATGATGGCCGCCACGAAACCCAAGCC
CCCGACCGGCGGCGTGGACGACAAGACCGAAGTCCGCGAATACTTTAACA
CCGAGGGGTTCCAACGCTGGAACCGCATATACAGCGAAGATGGGACAGTG
AACAAGGTGCAAGCAGACATTCGTGTGGGGCACCAACAAACCGTCGATAA
AATCTTGGGGTGGCTCGAAGCGGACGGAGTGAAGGGGGAGAGCATTTGCG
ATGCAGGCTGTGGGGTCGGGTCCTTGGCCATTCCCATGGCTAAGCTTGGA
GCCAAGGTCTCAGCGTCGGATATCAGTTCCTCGATGGCAAACGAGGGAAA
GCTGAGGGCTGAGGCCGTGTTGGGGAAGGCTACGGCCAGGGCGCGTTGTG
CGTTCTCAACCAGTGACTTGGAGGCATTAAAGGGGAAATACGACACCGTG
ACCTGTGTGGATGTGATGATTCACTATCCCACTGACAAGATGCAGGGGAT
GGTGAGCAAGCTGGGTTCATTGGCAAAGAAGAGGATGATTATTTCTTTTG
CTCCCAAGACTTGGTACTACGACATCTTGAAGCAGATCGGTGGGCTTTTC
CCCGGGCCGAGTAAAACAACCCGTGCGTATTTGCACACCGAGGCAGATGT
TCGCAAGGCTTTGGAAGAGGCAGGATTCACGGTGAAGCGTACGGACATGA
CGGCGACCAACTTTTATTTTTCGCGGTTGTTGGAGGCGGTGCGTGAATAA
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Synonyms
Publications