NO05G04130.1, NO05G04130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04130.1
Unique NameNO05G04130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1228
Alignment locationchr5:1059606..1060945 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1059606..1060945 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04130.1 vs.
Match: EWM27934.1 (sf [Nannochloropsis gaditana])

HSP 1 Score: 431.0 bits (1107), Expect = 3.400e-117
Identity = 243/301 (80.73%), Postives = 269/301 (89.37%), Query Frame = 0 
Query:   38 QYRPQSSMRHAAPPLPSNNPGGMAATRSETKQKLASIIDGFSHLDLEVKMGTQQRREKDESRLQELRASVIKIDKALSAEIKRGLERNKALEKWAEEQLAATANSFSARLEERTQEAQERLGVLRNRVDSLEEFFAREKEQALGIVEERGTVLTQTLAELQEGVDVERRERLEREGRLLRQLGEHEQEVALRFEQERTSRETKLSELKQNLEEFIRARKKVDDRFQAFVSEELGALKGELAREAAARAREDDEIVEALGRYTSKLQHSLKIVNAAALGGGYGGGGGGRGGYAGEFVSGSGD 339
            QYRP SS+RH APP PS  PGGMA TRSETKQKLASIID FSHLDLEVKMGTQQRREKDESRLQELRASV+KIDKALSAEIKRGLERNK LEKWAE+QLAATAN F+ARLEERTQEAQ+RLGVL++RVDSLEE+F REKEQAL +VEERG+ L+Q L ELQEG+D ERR+RLEREGR+LR LG+ E+ VALRFEQERTSRE K+ E++Q+L+EF+RARKKVDDRFQAFV+EELGALKGELAREAAARAREDDEI+EALGRYT+KLQHSLKIVNAAAL GG  GGG     YA    SGSG+
Sbjct:   28 QYRPPSSLRHMAPPPPSG-PGGMATTRSETKQKLASIIDNFSHLDLEVKMGTQQRREKDESRLQELRASVLKIDKALSAEIKRGLERNKLLEKWAEDQLAATANQFAARLEERTQEAQDRLGVLQSRVDSLEEYFTREKEQALSLVEERGSALSQALVELQEGMDAERRDRLEREGRMLRLLGDQEEGVALRFEQERTSREAKIVEVRQSLDEFVRARKKVDDRFQAFVTEELGALKGELAREAAARAREDDEIIEALGRYTNKLQHSLKIVNAAALCGGSEGGGALMASYA----SGSGE 323
The following BLAST results are available for this feature:
BLAST of NO05G04130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27934.13.400e-11780.73sf [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04130NO05G04130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04130.1NO05G04130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04130.1.cds1NO05G04130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04130.1.cds2NO05G04130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04130.1 ID=NO05G04130.1|Name=NO05G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp
ATGGAGTCCCATTGCACGCCATCGCTGCCGCCATCGGCTTCGGCACCCGA
TTCCGATGCCAACGCTTACCGGCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATACAGGCCCCAGTCTTCAATGCGGCACGCGGCGCCG
CCTCTTCCAAGCAACAATCCGGGTGGAATGGCTGCCACACGCAGCGAGAC
CAAGCAAAAGCTTGCTTCCATCATCGATGGTTTCTCCCACTTAGACCTGG
AAGTAAAAATGGGCACCCAACAAAGGCGAGAGAAAGACGAGTCCCGCCTC
CAAGAGCTCCGGGCCTCAGTCATTAAAATTGACAAGGCACTCTCCGCCGA
AATCAAACGCGGGCTGGAACGAAACAAGGCGCTGGAAAAATGGGCAGAGG
AGCAATTGGCGGCCACGGCGAATAGCTTTTCGGCCCGTCTTGAGGAGCGG
ACGCAGGAGGCCCAGGAACGGTTGGGGGTTTTGAGGAACAGGGTGGATTC
ATTGGAAGAGTTTTTTGCGCGAGAGAAGGAGCAGGCCTTGGGGATTGTAG
AGGAACGAGGGACAGTGCTGACACAGACATTGGCGGAATTGCAAGAGGGT
GTGGATGTGGAAAGGAGGGAGAGGTTGGAGAGGGAGGGACGGTTGTTGAG
GCAGTTGGGGGAGCATGAGCAGGAGGTGGCGTTAAGGTTCGAACAGGAGA
GGACATCGCGCGAGACGAAGCTTAGTGAGTTAAAGCAGAATTTGGAGGAA
TTTATACGGGCCAGAAAGAAGGTGGATGATCGGTTTCAGGCTTTTGTATC
GGAGGAGTTGGGGGCATTGAAAGGGGAGTTGGCAAGGGAGGCGGCGGCGA
GGGCGAGGGAGGATGATGAGATTGTGGAGGCTTTGGGGAGATATACGAGT
AAATTGCAGCATAGCTTGAAGATAGTAAACGCAGCGGCGTTGGGAGGAGG
GTATGGGGGTGGAGGAGGAGGGCGAGGAGGGTATGCGGGTGAGTTTGTGT
CTGGGTCGGGTGATTTGTAAGAAGGGGAAGAGGGAAGGGAACGAGGGATG
GACGGAGGGCAATGCAGGTAGAATGAACAAACCAAATGAATCGGGAAGAG
GAAGGAGGGAGAAGGCAGATTCCGGAGCCCAGGTCGGAAGAGGTGAAAAG
TAAGAGGAAACTTATCGATGGGACATAGAAAGAAGCATGGAAGAAAGAAG
AGTTAGAGTAGAGTTGTATTAGAAAATT
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protein sequence of NO05G04130.1

>NO05G04130.1-protein ID=NO05G04130.1-protein|Name=NO05G04130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=340bp
MESHCTPSLPPSASAPDSDANAYRQQQQQQQQQQQQQQYRPQSSMRHAAP
PLPSNNPGGMAATRSETKQKLASIIDGFSHLDLEVKMGTQQRREKDESRL
QELRASVIKIDKALSAEIKRGLERNKALEKWAEEQLAATANSFSARLEER
TQEAQERLGVLRNRVDSLEEFFAREKEQALGIVEERGTVLTQTLAELQEG
VDVERRERLEREGRLLRQLGEHEQEVALRFEQERTSRETKLSELKQNLEE
FIRARKKVDDRFQAFVSEELGALKGELAREAAARAREDDEIVEALGRYTS
KLQHSLKIVNAAALGGGYGGGGGGRGGYAGEFVSGSGDL*
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mRNA from alignment at chr5:1059606..1060945-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04130.1 ID=NO05G04130.1|Name=NO05G04130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1340bp|location=Sequence derived from alignment at chr5:1059606..1060945- (Nannochloropsis oceanica)
ATGGAGTCCCATTGTAAGTCTCTCTCCCTCCCCTGCCCTTTGCCCATCTG
CCCATGTCCCTCGCCCCATGCGCATAGGGAGATGCACCATCTCACTCACT
CTCCTCCTCCCATACTCGCAAATAGGCACGCCATCGCTGCCGCCATCGGC
TTCGGCACCCGATTCCGATGCCAACGCTTACCGGCAACAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAATACAGGCCCCAGTCTTCAATGCGG
CACGCGGCGCCGCCTCTTCCAAGCAACAATCCGGGTGGAATGGCTGCCAC
ACGCAGCGAGACCAAGCAAAAGCTTGCTTCCATCATCGATGGTTTCTCCC
ACTTAGACCTGGAAGTAAAAATGGGCACCCAACAAAGGCGAGAGAAAGAC
GAGTCCCGCCTCCAAGAGCTCCGGGCCTCAGTCATTAAAATTGACAAGGC
ACTCTCCGCCGAAATCAAACGCGGGCTGGAACGAAACAAGGCGCTGGAAA
AATGGGCAGAGGAGCAATTGGCGGCCACGGCGAATAGCTTTTCGGCCCGT
CTTGAGGAGCGGACGCAGGAGGCCCAGGAACGGTTGGGGGTTTTGAGGAA
CAGGGTGGATTCATTGGAAGAGTTTTTTGCGCGAGAGAAGGAGCAGGCCT
TGGGGATTGTAGAGGAACGAGGGACAGTGCTGACACAGACATTGGCGGAA
TTGCAAGAGGGTGTGGATGTGGAAAGGAGGGAGAGGTTGGAGAGGGAGGG
ACGGTTGTTGAGGCAGTTGGGGGAGCATGAGCAGGAGGTGGCGTTAAGGT
TCGAACAGGAGAGGACATCGCGCGAGACGAAGCTTAGTGAGTTAAAGCAG
AATTTGGAGGAATTTATACGGGCCAGAAAGAAGGTGGATGATCGGTTTCA
GGCTTTTGTATCGGAGGAGTTGGGGGCATTGAAAGGGGAGTTGGCAAGGG
AGGCGGCGGCGAGGGCGAGGGAGGATGATGAGATTGTGGAGGCTTTGGGG
AGATATACGAGTAAATTGCAGCATAGCTTGAAGATAGTAAACGCAGCGGC
GTTGGGAGGAGGGTATGGGGGTGGAGGAGGAGGGCGAGGAGGGTATGCGG
GTGAGTTTGTGTCTGGGTCGGGTGATTTGTAAGAAGGGGAAGAGGGAAGG
GAACGAGGGATGGACGGAGGGCAATGCAGGTAGAATGAACAAACCAAATG
AATCGGGAAGAGGAAGGAGGGAGAAGGCAGATTCCGGAGCCCAGGTCGGA
AGAGGTGAAAAGTAAGAGGAAACTTATCGATGGGACATAGAAAGAAGCAT
GGAAGAAAGAAGAGTTAGAGTAGAGTTGTATTAGAAAATT
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Coding sequence (CDS) from alignment at chr5:1059606..1060945-

>NO05G04130.1 ID=NO05G04130.1|Name=NO05G04130.1|organism=Nannochloropsis oceanica|type=CDS|length=1020bp|location=Sequence derived from alignment at chr5:1059606..1060945- (Nannochloropsis oceanica)
ATGGAGTCCCATTGCACGCCATCGCTGCCGCCATCGGCTTCGGCACCCGA
TTCCGATGCCAACGCTTACCGGCAACAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATACAGGCCCCAGTCTTCAATGCGGCACGCGGCGCCG
CCTCTTCCAAGCAACAATCCGGGTGGAATGGCTGCCACACGCAGCGAGAC
CAAGCAAAAGCTTGCTTCCATCATCGATGGTTTCTCCCACTTAGACCTGG
AAGTAAAAATGGGCACCCAACAAAGGCGAGAGAAAGACGAGTCCCGCCTC
CAAGAGCTCCGGGCCTCAGTCATTAAAATTGACAAGGCACTCTCCGCCGA
AATCAAACGCGGGCTGGAACGAAACAAGGCGCTGGAAAAATGGGCAGAGG
AGCAATTGGCGGCCACGGCGAATAGCTTTTCGGCCCGTCTTGAGGAGCGG
ACGCAGGAGGCCCAGGAACGGTTGGGGGTTTTGAGGAACAGGGTGGATTC
ATTGGAAGAGTTTTTTGCGCGAGAGAAGGAGCAGGCCTTGGGGATTGTAG
AGGAACGAGGGACAGTGCTGACACAGACATTGGCGGAATTGCAAGAGGGT
GTGGATGTGGAAAGGAGGGAGAGGTTGGAGAGGGAGGGACGGTTGTTGAG
GCAGTTGGGGGAGCATGAGCAGGAGGTGGCGTTAAGGTTCGAACAGGAGA
GGACATCGCGCGAGACGAAGCTTAGTGAGTTAAAGCAGAATTTGGAGGAA
TTTATACGGGCCAGAAAGAAGGTGGATGATCGGTTTCAGGCTTTTGTATC
GGAGGAGTTGGGGGCATTGAAAGGGGAGTTGGCAAGGGAGGCGGCGGCGA
GGGCGAGGGAGGATGATGAGATTGTGGAGGCTTTGGGGAGATATACGAGT
AAATTGCAGCATAGCTTGAAGATAGTAAACGCAGCGGCGTTGGGAGGAGG
GTATGGGGGTGGAGGAGGAGGGCGAGGAGGGTATGCGGGTGAGTTTGTGT
CTGGGTCGGGTGATTTGTAA
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Synonyms
Publications