NO05G04120.1, NO05G04120.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04120.1
Unique NameNO05G04120.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1614
Alignment locationchr5:1057565..1059178 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1057565..1059178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04120.1 vs.
Match: EWM27977.1 (phosphatidate cytidylyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 688.0 bits (1774), Expect = 2.300e-194
Identity = 367/505 (72.67%), Postives = 411/505 (81.39%), Query Frame = 0 
Query:    1 MPIETRGQRRRVVPRGGRAASGADDCSSSIARGGAGAGAGGTGAGAGAGAGAGAGGGGGSGWGRGGSGAGSEDSSTSSGINYSHHNSSTGSNGHGHGHHAANQAAASLLAKEQARSKIVTRVTFAILLLVVFFGIAWAGHPYIFLLVCGIQIMLFKELVAVRYRAAMEKRTPLFRTLQWSWFVSAMYYSHGDSIVKTLREDRLLDVNDDDQPEKSLIYSSFAIFSVVFVVTVLTLRPGLYKYQVGQLAWTVVILCLIVGQLKVVAPNIFSGIFWYFFPASCIMVNDIMAYVCGMTMGRRFVKRPFLRLSPNKTWEGFVGAFFCTLLWAFWFSGFLSRFPYFTCSFKQLRPSANFTWQELWPGTTFHQAWVRGGAMQPDRVFTQPFVKLPEVLVRLLRGRWTTIPCKPIQLHGLVIGGFGSLVAPFGGFLMSAIKRAYGIKDFDSLIPGHGGVTDRMDCQLVMILYTFVHYQTWIRHVPLNYDRVWDSVVSLSKEEQEKIWEELGR 506
            MP ETRGQRRR V RG ++ SG D+                        A   A   G +G  RG S     D S++ G +  +++++ G+NGH H H   + + AS  A+E+ RSKIVTRVTFAI+LL VFFGIAWAGH YIFLLVCGIQ+MLFKELVAVRYRAAMEK+TPLFRTLQWSWFV+AM+Y+HGDSIVK LRED LL +NDDDQPEKSLIYSSFA+FS +FVVTVLTLRPGLYKYQVGQLAWTVVIL LIVGQLKVVAPNIFSGIFWYFFPASCI+VNDIMAYVCGM+MGRRF+KRPFLRLSPNKTWEGF+GAFF TLLWAFWFS FL+RFPYFTCSFKQLRPS  FTWQEL PGTTFHQA +R   +QPDRVFTQ  V LP  L  LL GR  ++P KPIQ+HGLVIG FGSLVAPFGGFLMSAIKRAYGIKDFDSLIPGHGGVTDRMDCQLVMILYTFVHYQT+IRHVP+NY RVW SV +L +++Q +IWEELG+
Sbjct:    1 MPAETRGQRRRGVGRGAKSGSGEDEARH---------------------ASRSATKDGYTGGVRGASA----DESSAIGSSSQNNDTTLGANGHAHHHSPHHVSTAS--ARERTRSKIVTRVTFAIVLLAVFFGIAWAGHVYIFLLVCGIQVMLFKELVAVRYRAAMEKKTPLFRTLQWSWFVAAMFYAHGDSIVKLLREDSLLGINDDDQPEKSLIYSSFALFSTLFVVTVLTLRPGLYKYQVGQLAWTVVILLLIVGQLKVVAPNIFSGIFWYFFPASCIIVNDIMAYVCGMSMGRRFIKRPFLRLSPNKTWEGFIGAFFFTLLWAFWFSRFLARFPYFTCSFKQLRPSEEFTWQELRPGTTFHQAMLRANTVQPDRVFTQTTVVLPAALAHLL-GR-ASLPVKPIQMHGLVIGIFGSLVAPFGGFLMSAIKRAYGIKDFDSLIPGHGGVTDRMDCQLVMILYTFVHYQTFIRHVPINYHRVWASVSALKRDDQVRIWEELGK 476
The following BLAST results are available for this feature:
BLAST of NO05G04120.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27977.12.300e-19472.67phosphatidate cytidylyltransferase [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04120NO05G04120Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04120.1NO05G04120.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04120.1.cds1NO05G04120.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04120.1 ID=NO05G04120.1|Name=NO05G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp
ATGCCCATTGAGACAAGGGGGCAGCGGCGGCGGGTCGTCCCGCGCGGGGG
TCGGGCAGCTAGTGGGGCGGATGACTGTAGCTCGTCGATCGCAAGAGGGG
GGGCAGGTGCAGGGGCAGGGGGGACAGGAGCAGGAGCAGGAGCAGGAGCA
GGAGCAGGAGCAGGTGGAGGAGGGGGATCGGGGTGGGGGAGGGGAGGAAG
TGGAGCGGGCAGCGAGGACAGCAGCACCAGCAGCGGGATCAACTACAGCC
ACCATAACAGTAGCACGGGCAGCAACGGGCATGGCCACGGCCACCACGCC
GCAAATCAGGCGGCTGCCAGCCTCCTAGCCAAGGAACAAGCCCGCTCCAA
AATCGTGACCCGTGTGACCTTTGCAATATTACTGCTCGTGGTCTTCTTCG
GCATCGCCTGGGCGGGGCACCCCTACATATTCCTTCTGGTATGTGGCATT
CAAATCATGCTCTTCAAAGAACTCGTGGCGGTACGCTATCGCGCCGCCAT
GGAAAAAAGAACCCCCCTCTTCCGGACGCTGCAATGGAGCTGGTTCGTCT
CGGCCATGTACTATTCCCACGGGGATAGCATTGTCAAAACCCTCCGCGAA
GACCGCCTTCTCGACGTCAACGATGACGATCAACCAGAAAAATCGTTGAT
ATACTCGTCTTTCGCCATTTTCTCGGTAGTGTTTGTCGTGACGGTGTTGA
CCCTCCGTCCAGGGCTGTATAAGTACCAAGTTGGCCAATTGGCGTGGACC
GTCGTCATCCTCTGTCTCATCGTCGGACAGCTCAAGGTGGTAGCTCCCAA
CATTTTCAGTGGCATTTTTTGGTACTTTTTTCCCGCGTCATGCATAATGG
TGAATGATATAATGGCCTATGTGTGTGGGATGACGATGGGAAGGAGGTTT
GTCAAGCGACCCTTCCTGCGTTTGAGTCCCAATAAGACATGGGAGGGGTT
CGTCGGCGCTTTCTTTTGTACCTTGTTGTGGGCGTTCTGGTTCTCGGGTT
TCTTGTCAAGGTTCCCGTATTTTACTTGCTCCTTCAAGCAATTGCGGCCG
AGCGCGAATTTCACGTGGCAGGAGCTATGGCCGGGGACGACGTTTCATCA
GGCATGGGTGAGGGGGGGTGCGATGCAGCCCGATCGGGTGTTTACGCAGC
CCTTTGTGAAATTGCCCGAAGTTTTGGTGAGACTGCTGAGGGGGAGGTGG
ACGACGATACCCTGTAAGCCGATACAGCTGCATGGGCTTGTGATTGGCGG
GTTTGGGAGCCTGGTGGCGCCGTTCGGGGGGTTTTTAATGAGTGCAATCA
AGCGTGCGTACGGCATCAAGGATTTTGACAGTCTTATCCCGGGGCACGGT
GGGGTGACGGATCGTATGGATTGCCAATTGGTGATGATTTTGTATACTTT
TGTCCATTACCAGACATGGATTCGCCATGTTCCTTTGAATTATGACCGGG
TGTGGGATAGTGTGGTGAGCCTGAGCAAGGAGGAACAGGAAAAGATTTGG
GAGGAGCTTGGGAGGTTGGTGGGGAAATAGGGTGGAAGGGAGGTAGGAAA
GGAGTGAGGGGAGGAGGAGCGGGAGGGAGAACATTTGTCGTAGGTGCCGA
TGACGATTGGGGAG
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protein sequence of NO05G04120.1

>NO05G04120.1-protein ID=NO05G04120.1-protein|Name=NO05G04120.1|organism=Nannochloropsis oceanica|type=polypeptide|length=510bp
MPIETRGQRRRVVPRGGRAASGADDCSSSIARGGAGAGAGGTGAGAGAGA
GAGAGGGGGSGWGRGGSGAGSEDSSTSSGINYSHHNSSTGSNGHGHGHHA
ANQAAASLLAKEQARSKIVTRVTFAILLLVVFFGIAWAGHPYIFLLVCGI
QIMLFKELVAVRYRAAMEKRTPLFRTLQWSWFVSAMYYSHGDSIVKTLRE
DRLLDVNDDDQPEKSLIYSSFAIFSVVFVVTVLTLRPGLYKYQVGQLAWT
VVILCLIVGQLKVVAPNIFSGIFWYFFPASCIMVNDIMAYVCGMTMGRRF
VKRPFLRLSPNKTWEGFVGAFFCTLLWAFWFSGFLSRFPYFTCSFKQLRP
SANFTWQELWPGTTFHQAWVRGGAMQPDRVFTQPFVKLPEVLVRLLRGRW
TTIPCKPIQLHGLVIGGFGSLVAPFGGFLMSAIKRAYGIKDFDSLIPGHG
GVTDRMDCQLVMILYTFVHYQTWIRHVPLNYDRVWDSVVSLSKEEQEKIW
EELGRLVGK*
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mRNA from alignment at chr5:1057565..1059178+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04120.1 ID=NO05G04120.1|Name=NO05G04120.1|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at chr5:1057565..1059178+ (Nannochloropsis oceanica)
ATGCCCATTGAGACAAGGGGGCAGCGGCGGCGGGTCGTCCCGCGCGGGGG
TCGGGCAGCTAGTGGGGCGGATGACTGTAGCTCGTCGATCGCAAGAGGGG
GGGCAGGTGCAGGGGCAGGGGGGACAGGAGCAGGAGCAGGAGCAGGAGCA
GGAGCAGGAGCAGGTGGAGGAGGGGGATCGGGGTGGGGGAGGGGAGGAAG
TGGAGCGGGCAGCGAGGACAGCAGCACCAGCAGCGGGATCAACTACAGCC
ACCATAACAGTAGCACGGGCAGCAACGGGCATGGCCACGGCCACCACGCC
GCAAATCAGGCGGCTGCCAGCCTCCTAGCCAAGGAACAAGCCCGCTCCAA
AATCGTGACCCGTGTGACCTTTGCAATATTACTGCTCGTGGTCTTCTTCG
GCATCGCCTGGGCGGGGCACCCCTACATATTCCTTCTGGTATGTGGCATT
CAAATCATGCTCTTCAAAGAACTCGTGGCGGTACGCTATCGCGCCGCCAT
GGAAAAAAGAACCCCCCTCTTCCGGACGCTGCAATGGAGCTGGTTCGTCT
CGGCCATGTACTATTCCCACGGGGATAGCATTGTCAAAACCCTCCGCGAA
GACCGCCTTCTCGACGTCAACGATGACGATCAACCAGAAAAATCGTTGAT
ATACTCGTCTTTCGCCATTTTCTCGGTAGTGTTTGTCGTGACGGTGTTGA
CCCTCCGTCCAGGGCTGTATAAGTACCAAGTTGGCCAATTGGCGTGGACC
GTCGTCATCCTCTGTCTCATCGTCGGACAGCTCAAGGTGGTAGCTCCCAA
CATTTTCAGTGGCATTTTTTGGTACTTTTTTCCCGCGTCATGCATAATGG
TGAATGATATAATGGCCTATGTGTGTGGGATGACGATGGGAAGGAGGTTT
GTCAAGCGACCCTTCCTGCGTTTGAGTCCCAATAAGACATGGGAGGGGTT
CGTCGGCGCTTTCTTTTGTACCTTGTTGTGGGCGTTCTGGTTCTCGGGTT
TCTTGTCAAGGTTCCCGTATTTTACTTGCTCCTTCAAGCAATTGCGGCCG
AGCGCGAATTTCACGTGGCAGGAGCTATGGCCGGGGACGACGTTTCATCA
GGCATGGGTGAGGGGGGGTGCGATGCAGCCCGATCGGGTGTTTACGCAGC
CCTTTGTGAAATTGCCCGAAGTTTTGGTGAGACTGCTGAGGGGGAGGTGG
ACGACGATACCCTGTAAGCCGATACAGCTGCATGGGCTTGTGATTGGCGG
GTTTGGGAGCCTGGTGGCGCCGTTCGGGGGGTTTTTAATGAGTGCAATCA
AGCGTGCGTACGGCATCAAGGATTTTGACAGTCTTATCCCGGGGCACGGT
GGGGTGACGGATCGTATGGATTGCCAATTGGTGATGATTTTGTATACTTT
TGTCCATTACCAGACATGGATTCGCCATGTTCCTTTGAATTATGACCGGG
TGTGGGATAGTGTGGTGAGCCTGAGCAAGGAGGAACAGGAAAAGATTTGG
GAGGAGCTTGGGAGGTTGGTGGGGAAATAGGGTGGAAGGGAGGTAGGAAA
GGAGTGAGGGGAGGAGGAGCGGGAGGGAGAACATTTGTCGTAGGTGCCGA
TGACGATTGGGGAG
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Coding sequence (CDS) from alignment at chr5:1057565..1059178+

>NO05G04120.1 ID=NO05G04120.1|Name=NO05G04120.1|organism=Nannochloropsis oceanica|type=CDS|length=1530bp|location=Sequence derived from alignment at chr5:1057565..1059178+ (Nannochloropsis oceanica)
ATGCCCATTGAGACAAGGGGGCAGCGGCGGCGGGTCGTCCCGCGCGGGGG
TCGGGCAGCTAGTGGGGCGGATGACTGTAGCTCGTCGATCGCAAGAGGGG
GGGCAGGTGCAGGGGCAGGGGGGACAGGAGCAGGAGCAGGAGCAGGAGCA
GGAGCAGGAGCAGGTGGAGGAGGGGGATCGGGGTGGGGGAGGGGAGGAAG
TGGAGCGGGCAGCGAGGACAGCAGCACCAGCAGCGGGATCAACTACAGCC
ACCATAACAGTAGCACGGGCAGCAACGGGCATGGCCACGGCCACCACGCC
GCAAATCAGGCGGCTGCCAGCCTCCTAGCCAAGGAACAAGCCCGCTCCAA
AATCGTGACCCGTGTGACCTTTGCAATATTACTGCTCGTGGTCTTCTTCG
GCATCGCCTGGGCGGGGCACCCCTACATATTCCTTCTGGTATGTGGCATT
CAAATCATGCTCTTCAAAGAACTCGTGGCGGTACGCTATCGCGCCGCCAT
GGAAAAAAGAACCCCCCTCTTCCGGACGCTGCAATGGAGCTGGTTCGTCT
CGGCCATGTACTATTCCCACGGGGATAGCATTGTCAAAACCCTCCGCGAA
GACCGCCTTCTCGACGTCAACGATGACGATCAACCAGAAAAATCGTTGAT
ATACTCGTCTTTCGCCATTTTCTCGGTAGTGTTTGTCGTGACGGTGTTGA
CCCTCCGTCCAGGGCTGTATAAGTACCAAGTTGGCCAATTGGCGTGGACC
GTCGTCATCCTCTGTCTCATCGTCGGACAGCTCAAGGTGGTAGCTCCCAA
CATTTTCAGTGGCATTTTTTGGTACTTTTTTCCCGCGTCATGCATAATGG
TGAATGATATAATGGCCTATGTGTGTGGGATGACGATGGGAAGGAGGTTT
GTCAAGCGACCCTTCCTGCGTTTGAGTCCCAATAAGACATGGGAGGGGTT
CGTCGGCGCTTTCTTTTGTACCTTGTTGTGGGCGTTCTGGTTCTCGGGTT
TCTTGTCAAGGTTCCCGTATTTTACTTGCTCCTTCAAGCAATTGCGGCCG
AGCGCGAATTTCACGTGGCAGGAGCTATGGCCGGGGACGACGTTTCATCA
GGCATGGGTGAGGGGGGGTGCGATGCAGCCCGATCGGGTGTTTACGCAGC
CCTTTGTGAAATTGCCCGAAGTTTTGGTGAGACTGCTGAGGGGGAGGTGG
ACGACGATACCCTGTAAGCCGATACAGCTGCATGGGCTTGTGATTGGCGG
GTTTGGGAGCCTGGTGGCGCCGTTCGGGGGGTTTTTAATGAGTGCAATCA
AGCGTGCGTACGGCATCAAGGATTTTGACAGTCTTATCCCGGGGCACGGT
GGGGTGACGGATCGTATGGATTGCCAATTGGTGATGATTTTGTATACTTT
TGTCCATTACCAGACATGGATTCGCCATGTTCCTTTGAATTATGACCGGG
TGTGGGATAGTGTGGTGAGCCTGAGCAAGGAGGAACAGGAAAAGATTTGG
GAGGAGCTTGGGAGGTTGGTGGGGAAATAG
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Synonyms
Publications