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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1056059..1057543 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04110.1 vs.
Match: EWM27935.1 (heat shock protein 70 [Nannochloropsis gaditana]) HSP 1 Score: 363.6 bits (932), Expect = 5.200e-97 Identity = 187/250 (74.80%), Postives = 222/250 (88.80%), Query Frame = 0
Query: 18 AEEKKNLGNKAYMAKKYDEAITRYSEAIELDPDSHIYYSNRSACHGAKGDWASAAADAKICLGKDPNFLKGYYRLTMAQMEMKDFDAALETIKAGLKRQPDNAELQKQLRLVKAKKQAADYVRHTDSSGSAGRGMSGEELAEVQEQYIAANKELKEVRSKGVAASGEKRRNELCLSELSKISEETRLFNSVGKMFVLTPRAQVLSQLERCVAEAEQRATDLEARHAYLEAKISSHEAILKEASKAGGASA 268
A+EKK LGN A+ AKKYDEAI +YSEAIELDP+SH+YYSNRSACH AK +WA AAADAK C+ KDP FLKGYYRLT+AQME +DFD ALETIKA LKRQPDNAE++KQL+LV AKK+AA++VR+ DS+G+AGRGMSGEELAE+QEQYIAANKELKEVR+KGVAA+GEKRR EL L+ELSK+ ++TRLF SVGK F+L R ++L+ LE V+EAE+RAT +EARHAYLEA++SSHEAILKEA+KAG ASA
Sbjct: 19 AQEKKELGNTAFAAKKYDEAIAKYSEAIELDPESHVYYSNRSACHWAKREWALAAADAKTCIEKDPAFLKGYYRLTLAQMEQEDFDGALETIKACLKRQPDNAEMRKQLQLVNAKKKAAEFVRNADSTGAAGRGMSGEELAEIQEQYIAANKELKEVRAKGVAATGEKRRTELTLAELSKVGDDTRLFRSVGKAFMLAARPELLNDLEERVSEAEKRATSMEARHAYLEARLSSHEAILKEAAKAGRASA 268
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp GTGGGGTCGTGGTGTGGAGAGCAGAATGAGGAGAGACTGGGATAAGAGGA CTTCATGAAAGAGGCAACTCTATACGAGTGCGTGTGTTCATCTTGAGGGT CAAGTGCTTGGTTGTCGAGTGGGTTTATTTAGACATCAGCCCCCTTCTGG CTTCTCCTCGCTTCCTCTCGCCGTCAACCACAGCGCCCTAGTACGACCTG GGCGTGTCCTCTCACAGAGCCACGAACTCTGCGAATTAACTTTGCAAGCG CCGGCACAATTCACTTGTGATTGCATCCTCATCCTATTCGTATTATCCCT GGCAATTGGTGCATGCGCTTTGAGGGCGTAGGGTGAAAGTGCCTCGTGCG ACGCCCAAGAGCATTCTGTGAGATCCTTTTACTGCCCTTGCTCACCAACC TCATACACTCCTTGAACGCAGGTTCATCAACATGAGCAGCATGGAAACAA GCGACTCCAGCAGCGGGACTGACAAGACGGGTGCGGAAGAAAAGAAAAAT CTAGGCAACAAGGCATACATGGCCAAGAAGTATGACGAAGCTATCACACG GTACAGTGAGGCCATCGAGCTCGATCCCGACAGCCACATTTACTATTCCA ATCGCAGCGCATGCCATGGGGCCAAGGGCGACTGGGCTTCGGCCGCCGCG GACGCCAAAATCTGTCTTGGCAAGGACCCGAATTTCTTGAAGGGATACTA TCGCTTGACAATGGCACAGATGGAAATGAAGGATTTTGACGCGGCCTTGG AGACGATCAAGGCAGGGTTGAAACGACAGCCTGACAATGCGGAGCTCCAA AAGCAACTCCGATTGGTCAAAGCCAAGAAGCAAGCAGCGGATTATGTGCG GCATACCGATAGCAGTGGATCAGCGGGGCGAGGTATGTCAGGGGAGGAGC TGGCGGAGGTGCAGGAGCAGTACATTGCTGCAAACAAGGAATTGAAAGAA GTACGGTCCAAGGGCGTGGCGGCCTCGGGAGAGAAGCGACGGAACGAACT GTGCTTGTCCGAGTTAAGCAAGATATCGGAGGAGACAAGGTTGTTTAATT CGGTAGGGAAAATGTTCGTACTGACGCCGCGTGCACAAGTGTTGAGTCAG TTGGAGAGGTGCGTGGCCGAGGCGGAGCAGCGGGCTACAGATTTGGAAGC ACGACATGCGTACCTAGAAGCAAAGATCTCGTCGCACGAAGCGATATTGA AGGAGGCATCCAAGGCAGGCGGGGCATCGGCTTGACGATTGGCCGGGGGA GGAGGATAATCCCAACGAGTAATGTTTTGAGAGATGGAAAGTGTCCGAAT GACGAAAAGGAAGACGAAAGAATTCCTGGTACTCTTATTGCTTAAGTATT GC back to topprotein sequence of NO05G04110.1 >NO05G04110.1-protein ID=NO05G04110.1-protein|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp MSSMETSDSSSGTDKTGAEEKKNLGNKAYMAKKYDEAITRYSEAIELDPD SHIYYSNRSACHGAKGDWASAAADAKICLGKDPNFLKGYYRLTMAQMEMK DFDAALETIKAGLKRQPDNAELQKQLRLVKAKKQAADYVRHTDSSGSAGR GMSGEELAEVQEQYIAANKELKEVRSKGVAASGEKRRNELCLSELSKISE ETRLFNSVGKMFVLTPRAQVLSQLERCVAEAEQRATDLEARHAYLEAKIS SHEAILKEASKAGGASA* back to topmRNA from alignment at chr5:1056059..1057543- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at chr5:1056059..1057543- (Nannochloropsis oceanica) GTGGGGTCGTGGTGTGGAGAGCAGAATGAGGAGAGACTGGGATAAGAGGA
CTTCATGAAAGAGGCAACTCTATACGAGTGCGTGTGTTCATCTTGAGGGT
CAAGTGCTTGGTTGTCGAGTGGGTTTATTTAGACATCAGCCCCCTTCTGG
CTTCTCCTCGCTTCCTCTCGCCGTCAACCACAGCGCCCTAGTACGACCTG
GGCGTGTCCTCTCACAGAGCCACGAACTCTGCGAATTAACTTTGCAAGCG
CCGGCACAATTCACTTGTGATTGCATCCTCATCCTATTCGTATTATCCCT
GGCAATTGGTGCATGCGCTTTGAGGGCGTAGGGTGAAAGTGCCTCGTGCG
ACGCCCAAGAGCATTCTGTGAGATCCTTTTACTGCCCTTGCTCACCAACC
TCATACACTCCTTGAACGCAGGTTCATCAACATGAGCAGCATGGAAACAA
GCGACTCCAGCAGCGGGACTGACAAGACGGGTGCGGAAGAAAAGAAAAAG
TAAGCCCCCCCCCCCCGTCTTCAATTAAATTTGTTCTACCCTAGTTCCTC
CCCTACCTCCCTCCTCCCTCTTTTTCGCAGCTCTCCATCCACCCGACCGC
ATCCAACCGCACCCCTATAAAAACCAAATTAGTCTAGGCAACAAGGCATA
CATGGCCAAGAAGTATGACGAAGCTATCACACGGTACAGTGAGGCCATCG
AGCTCGATCCCGACAGCCACATTTACTATTCCAATCGCAGCGCATGCCAT
GGGGCCAAGGGCGACTGGGCTTCGGCCGCCGCGGACGCCAAAATCTGTCT
TGGCAAGGACCCGAATTTCTTGAAGGGATACTATCGCTTGACAATGGCAC
AGATGGAAATGAAGGATTTTGACGCGGCCTTGGAGACGATCAAGGCAGGG
TTGAAACGACAGCCTGACAATGCGGAGCTCCAAAAGCAACTCCGATTGGT
CAAAGCCAAGAAGCAAGCAGCGGATTATGTGCGGCATACCGATAGCAGTG
GATCAGCGGGGCGAGGTATGTCAGGGGAGGAGCTGGCGGAGGTGCAGGAG
CAGTACATTGCTGCAAACAAGGAATTGAAAGAAGTACGGTCCAAGGGCGT
GGCGGCCTCGGGAGAGAAGCGACGGAACGAACTGTGCTTGTCCGAGTTAA
GCAAGATATCGGAGGAGACAAGGTTGTTTAATTCGGTAGGGAAAATGTTC
GTACTGACGCCGCGTGCACAAGTGTTGAGTCAGTTGGAGAGGTGCGTGGC
CGAGGCGGAGCAGCGGGCTACAGATTTGGAAGCACGACATGCGTACCTAG
AAGCAAAGATCTCGTCGCACGAAGCGATATTGAAGGAGGCATCCAAGGCA
GGCGGGGCATCGGCTTGACGATTGGCCGGGGGAGGAGGATAATCCCAACG
AGTAATGTTTTGAGAGATGGAAAGTGTCCGAATGACGAAAAGGAAGACGA
AAGAATTCCTGGTACTCTTATTGCTTAAGTATTGC back to topCoding sequence (CDS) from alignment at chr5:1056059..1057543- >NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr5:1056059..1057543- (Nannochloropsis oceanica) ATGAGCAGCATGGAAACAAGCGACTCCAGCAGCGGGACTGACAAGACGGG TGCGGAAGAAAAGAAAAATCTAGGCAACAAGGCATACATGGCCAAGAAGT ATGACGAAGCTATCACACGGTACAGTGAGGCCATCGAGCTCGATCCCGAC AGCCACATTTACTATTCCAATCGCAGCGCATGCCATGGGGCCAAGGGCGA CTGGGCTTCGGCCGCCGCGGACGCCAAAATCTGTCTTGGCAAGGACCCGA ATTTCTTGAAGGGATACTATCGCTTGACAATGGCACAGATGGAAATGAAG GATTTTGACGCGGCCTTGGAGACGATCAAGGCAGGGTTGAAACGACAGCC TGACAATGCGGAGCTCCAAAAGCAACTCCGATTGGTCAAAGCCAAGAAGC AAGCAGCGGATTATGTGCGGCATACCGATAGCAGTGGATCAGCGGGGCGA GGTATGTCAGGGGAGGAGCTGGCGGAGGTGCAGGAGCAGTACATTGCTGC AAACAAGGAATTGAAAGAAGTACGGTCCAAGGGCGTGGCGGCCTCGGGAG AGAAGCGACGGAACGAACTGTGCTTGTCCGAGTTAAGCAAGATATCGGAG GAGACAAGGTTGTTTAATTCGGTAGGGAAAATGTTCGTACTGACGCCGCG TGCACAAGTGTTGAGTCAGTTGGAGAGGTGCGTGGCCGAGGCGGAGCAGC GGGCTACAGATTTGGAAGCACGACATGCGTACCTAGAAGCAAAGATCTCG TCGCACGAAGCGATATTGAAGGAGGCATCCAAGGCAGGCGGGGCATCGGC TTGA back to top
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