NO05G04110.1, NO05G04110.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04110.1
Unique NameNO05G04110.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1352
Alignment locationchr5:1056059..1057543 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1056059..1057543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04110.1 vs.
Match: EWM27935.1 (heat shock protein 70 [Nannochloropsis gaditana])

HSP 1 Score: 363.6 bits (932), Expect = 5.200e-97
Identity = 187/250 (74.80%), Postives = 222/250 (88.80%), Query Frame = 0
Query:   18 AEEKKNLGNKAYMAKKYDEAITRYSEAIELDPDSHIYYSNRSACHGAKGDWASAAADAKICLGKDPNFLKGYYRLTMAQMEMKDFDAALETIKAGLKRQPDNAELQKQLRLVKAKKQAADYVRHTDSSGSAGRGMSGEELAEVQEQYIAANKELKEVRSKGVAASGEKRRNELCLSELSKISEETRLFNSVGKMFVLTPRAQVLSQLERCVAEAEQRATDLEARHAYLEAKISSHEAILKEASKAGGASA 268
            A+EKK LGN A+ AKKYDEAI +YSEAIELDP+SH+YYSNRSACH AK +WA AAADAK C+ KDP FLKGYYRLT+AQME +DFD ALETIKA LKRQPDNAE++KQL+LV AKK+AA++VR+ DS+G+AGRGMSGEELAE+QEQYIAANKELKEVR+KGVAA+GEKRR EL L+ELSK+ ++TRLF SVGK F+L  R ++L+ LE  V+EAE+RAT +EARHAYLEA++SSHEAILKEA+KAG ASA
Sbjct:   19 AQEKKELGNTAFAAKKYDEAIAKYSEAIELDPESHVYYSNRSACHWAKREWALAAADAKTCIEKDPAFLKGYYRLTLAQMEQEDFDGALETIKACLKRQPDNAEMRKQLQLVNAKKKAAEFVRNADSTGAAGRGMSGEELAEIQEQYIAANKELKEVRAKGVAATGEKRRTELTLAELSKVGDDTRLFRSVGKAFMLAARPELLNDLEERVSEAEKRATSMEARHAYLEARLSSHEAILKEAAKAGRASA 268          
The following BLAST results are available for this feature:
BLAST of NO05G04110.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27935.15.200e-9774.80heat shock protein 70 [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04110NO05G04110Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04110.1NO05G04110.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04110.1.cds1NO05G04110.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04110.1.cds2NO05G04110.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1352bp
GTGGGGTCGTGGTGTGGAGAGCAGAATGAGGAGAGACTGGGATAAGAGGA
CTTCATGAAAGAGGCAACTCTATACGAGTGCGTGTGTTCATCTTGAGGGT
CAAGTGCTTGGTTGTCGAGTGGGTTTATTTAGACATCAGCCCCCTTCTGG
CTTCTCCTCGCTTCCTCTCGCCGTCAACCACAGCGCCCTAGTACGACCTG
GGCGTGTCCTCTCACAGAGCCACGAACTCTGCGAATTAACTTTGCAAGCG
CCGGCACAATTCACTTGTGATTGCATCCTCATCCTATTCGTATTATCCCT
GGCAATTGGTGCATGCGCTTTGAGGGCGTAGGGTGAAAGTGCCTCGTGCG
ACGCCCAAGAGCATTCTGTGAGATCCTTTTACTGCCCTTGCTCACCAACC
TCATACACTCCTTGAACGCAGGTTCATCAACATGAGCAGCATGGAAACAA
GCGACTCCAGCAGCGGGACTGACAAGACGGGTGCGGAAGAAAAGAAAAAT
CTAGGCAACAAGGCATACATGGCCAAGAAGTATGACGAAGCTATCACACG
GTACAGTGAGGCCATCGAGCTCGATCCCGACAGCCACATTTACTATTCCA
ATCGCAGCGCATGCCATGGGGCCAAGGGCGACTGGGCTTCGGCCGCCGCG
GACGCCAAAATCTGTCTTGGCAAGGACCCGAATTTCTTGAAGGGATACTA
TCGCTTGACAATGGCACAGATGGAAATGAAGGATTTTGACGCGGCCTTGG
AGACGATCAAGGCAGGGTTGAAACGACAGCCTGACAATGCGGAGCTCCAA
AAGCAACTCCGATTGGTCAAAGCCAAGAAGCAAGCAGCGGATTATGTGCG
GCATACCGATAGCAGTGGATCAGCGGGGCGAGGTATGTCAGGGGAGGAGC
TGGCGGAGGTGCAGGAGCAGTACATTGCTGCAAACAAGGAATTGAAAGAA
GTACGGTCCAAGGGCGTGGCGGCCTCGGGAGAGAAGCGACGGAACGAACT
GTGCTTGTCCGAGTTAAGCAAGATATCGGAGGAGACAAGGTTGTTTAATT
CGGTAGGGAAAATGTTCGTACTGACGCCGCGTGCACAAGTGTTGAGTCAG
TTGGAGAGGTGCGTGGCCGAGGCGGAGCAGCGGGCTACAGATTTGGAAGC
ACGACATGCGTACCTAGAAGCAAAGATCTCGTCGCACGAAGCGATATTGA
AGGAGGCATCCAAGGCAGGCGGGGCATCGGCTTGACGATTGGCCGGGGGA
GGAGGATAATCCCAACGAGTAATGTTTTGAGAGATGGAAAGTGTCCGAAT
GACGAAAAGGAAGACGAAAGAATTCCTGGTACTCTTATTGCTTAAGTATT
GC
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protein sequence of NO05G04110.1

>NO05G04110.1-protein ID=NO05G04110.1-protein|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=polypeptide|length=268bp
MSSMETSDSSSGTDKTGAEEKKNLGNKAYMAKKYDEAITRYSEAIELDPD
SHIYYSNRSACHGAKGDWASAAADAKICLGKDPNFLKGYYRLTMAQMEMK
DFDAALETIKAGLKRQPDNAELQKQLRLVKAKKQAADYVRHTDSSGSAGR
GMSGEELAEVQEQYIAANKELKEVRSKGVAASGEKRRNELCLSELSKISE
ETRLFNSVGKMFVLTPRAQVLSQLERCVAEAEQRATDLEARHAYLEAKIS
SHEAILKEASKAGGASA*
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mRNA from alignment at chr5:1056059..1057543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=mRNA|length=1485bp|location=Sequence derived from alignment at chr5:1056059..1057543- (Nannochloropsis oceanica)
GTGGGGTCGTGGTGTGGAGAGCAGAATGAGGAGAGACTGGGATAAGAGGA CTTCATGAAAGAGGCAACTCTATACGAGTGCGTGTGTTCATCTTGAGGGT CAAGTGCTTGGTTGTCGAGTGGGTTTATTTAGACATCAGCCCCCTTCTGG CTTCTCCTCGCTTCCTCTCGCCGTCAACCACAGCGCCCTAGTACGACCTG GGCGTGTCCTCTCACAGAGCCACGAACTCTGCGAATTAACTTTGCAAGCG CCGGCACAATTCACTTGTGATTGCATCCTCATCCTATTCGTATTATCCCT GGCAATTGGTGCATGCGCTTTGAGGGCGTAGGGTGAAAGTGCCTCGTGCG ACGCCCAAGAGCATTCTGTGAGATCCTTTTACTGCCCTTGCTCACCAACC TCATACACTCCTTGAACGCAGGTTCATCAACATGAGCAGCATGGAAACAA GCGACTCCAGCAGCGGGACTGACAAGACGGGTGCGGAAGAAAAGAAAAAG TAAGCCCCCCCCCCCCGTCTTCAATTAAATTTGTTCTACCCTAGTTCCTC CCCTACCTCCCTCCTCCCTCTTTTTCGCAGCTCTCCATCCACCCGACCGC ATCCAACCGCACCCCTATAAAAACCAAATTAGTCTAGGCAACAAGGCATA CATGGCCAAGAAGTATGACGAAGCTATCACACGGTACAGTGAGGCCATCG AGCTCGATCCCGACAGCCACATTTACTATTCCAATCGCAGCGCATGCCAT GGGGCCAAGGGCGACTGGGCTTCGGCCGCCGCGGACGCCAAAATCTGTCT TGGCAAGGACCCGAATTTCTTGAAGGGATACTATCGCTTGACAATGGCAC AGATGGAAATGAAGGATTTTGACGCGGCCTTGGAGACGATCAAGGCAGGG TTGAAACGACAGCCTGACAATGCGGAGCTCCAAAAGCAACTCCGATTGGT CAAAGCCAAGAAGCAAGCAGCGGATTATGTGCGGCATACCGATAGCAGTG GATCAGCGGGGCGAGGTATGTCAGGGGAGGAGCTGGCGGAGGTGCAGGAG CAGTACATTGCTGCAAACAAGGAATTGAAAGAAGTACGGTCCAAGGGCGT GGCGGCCTCGGGAGAGAAGCGACGGAACGAACTGTGCTTGTCCGAGTTAA GCAAGATATCGGAGGAGACAAGGTTGTTTAATTCGGTAGGGAAAATGTTC GTACTGACGCCGCGTGCACAAGTGTTGAGTCAGTTGGAGAGGTGCGTGGC CGAGGCGGAGCAGCGGGCTACAGATTTGGAAGCACGACATGCGTACCTAG AAGCAAAGATCTCGTCGCACGAAGCGATATTGAAGGAGGCATCCAAGGCA GGCGGGGCATCGGCTTGACGATTGGCCGGGGGAGGAGGATAATCCCAACG AGTAATGTTTTGAGAGATGGAAAGTGTCCGAATGACGAAAAGGAAGACGA AAGAATTCCTGGTACTCTTATTGCTTAAGTATTGC
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Coding sequence (CDS) from alignment at chr5:1056059..1057543-

>NO05G04110.1 ID=NO05G04110.1|Name=NO05G04110.1|organism=Nannochloropsis oceanica|type=CDS|length=804bp|location=Sequence derived from alignment at chr5:1056059..1057543- (Nannochloropsis oceanica)
ATGAGCAGCATGGAAACAAGCGACTCCAGCAGCGGGACTGACAAGACGGG
TGCGGAAGAAAAGAAAAATCTAGGCAACAAGGCATACATGGCCAAGAAGT
ATGACGAAGCTATCACACGGTACAGTGAGGCCATCGAGCTCGATCCCGAC
AGCCACATTTACTATTCCAATCGCAGCGCATGCCATGGGGCCAAGGGCGA
CTGGGCTTCGGCCGCCGCGGACGCCAAAATCTGTCTTGGCAAGGACCCGA
ATTTCTTGAAGGGATACTATCGCTTGACAATGGCACAGATGGAAATGAAG
GATTTTGACGCGGCCTTGGAGACGATCAAGGCAGGGTTGAAACGACAGCC
TGACAATGCGGAGCTCCAAAAGCAACTCCGATTGGTCAAAGCCAAGAAGC
AAGCAGCGGATTATGTGCGGCATACCGATAGCAGTGGATCAGCGGGGCGA
GGTATGTCAGGGGAGGAGCTGGCGGAGGTGCAGGAGCAGTACATTGCTGC
AAACAAGGAATTGAAAGAAGTACGGTCCAAGGGCGTGGCGGCCTCGGGAG
AGAAGCGACGGAACGAACTGTGCTTGTCCGAGTTAAGCAAGATATCGGAG
GAGACAAGGTTGTTTAATTCGGTAGGGAAAATGTTCGTACTGACGCCGCG
TGCACAAGTGTTGAGTCAGTTGGAGAGGTGCGTGGCCGAGGCGGAGCAGC
GGGCTACAGATTTGGAAGCACGACATGCGTACCTAGAAGCAAAGATCTCG
TCGCACGAAGCGATATTGAAGGAGGCATCCAAGGCAGGCGGGGCATCGGC
TTGA
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Synonyms
Publications