NO05G04030.1, NO05G04030.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04030.1
Unique NameNO05G04030.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1632
Alignment locationchr5:1038968..1040763 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1038968..1040763 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G04030.1 vs.
Match: EWM27996.1 (fha domain protein [Nannochloropsis gaditana])

HSP 1 Score: 679.9 bits (1753), Expect = 6.700e-192
Identity = 368/534 (68.91%), Postives = 410/534 (76.78%), Query Frame = 0 
Query:    1 MGLASSTMGAASSSKQDNSSSDLTQQ------DGHI------WGRTSLRVSGGDDGATCVQVKIMPLVPGKANREVKTFKISSNGAVLEGGMTPEIRDIAREYEKMTGEALPRISIDDRRAQQLLVSCVGEDYYVAPAPELFSRHTGTCRVLGDKHQRTTDYRLQVGDFLRIGSVGLIVSELHPGKELGRAAGGDSSDSGSSSGNCRTNNGTRMMQESSMGTSHA-ASNRRGNASGSSGDTTQEGDLGATNGGRRPRNPYPNNHSNTSTTNYHSVPLAITEKDLFYLREDVGELRNDLFAQQEAATAAEEGLAAAAGGLTPGRSPRVIQCYMCFDDEDTVENPLVAPCLCKGGTRYVHLTCLQKWQASAGDDKDCVVATSAELKNTCKICKSKYKTHVRAKDGRLLPLLGHQLPPPFICFLVVTKHDTAEELFNTQFQLSFAENKQILIGRSRTCQMVLDYRTVSTQHATVTFRKGGFYFRDLSSSNGSMLNLRRPMKLPYNQWVRIRYGRSIVAFKAKRSWIRRRLSAMPPAG 522
            MG+ASSTMGAASSS QD SS  +  +       GH       W R+SLR++GGDD A  VQVKIMPLVPG A R+VKT KI+S GAVLEG M+PEIR+IAREYE+  G +LPRI IDDRRAQQL+V CVGED+Y+ PAPELFSRHTGTCRVLGDKHQRT DY L+VGDFLRIGSVGLIVSEL PG+E G     +S   G + G      G     E   G   A A +R+G   GS  D      +G  +G          + S  +  N  S   +ITEKDLFYLRED GE+R DLFAQ+EAATA +EGLAA A GL+PGRSPRV  CYMCFDDED+  NPLVAPCLCKGGTRYVHL+CL+ WQASAGD+KDCV+ TSAE+K TCKICK+KYKTHVR  DGRLLPLL H LPPPFICFLVVTKHD AEELFNTQFQLSF+ENKQILIGRSR C MVLDYRTVSTQHATVT+RKGGFYFRDLSSSNGSMLNLRRPMKLPYNQWVRIRYGRSIVAFKA+RSW+R RLS+M   G
Sbjct:    1 MGVASSTMGAASSSAQDGSSDRMDVEGVSGGSSGHSMAASQRWSRSSLRMTGGDDTAMSVQVKIMPLVPGTATRDVKTCKITSAGAVLEGKMSPEIRNIAREYERAMGHSLPRIPIDDRRAQQLMVVCVGEDFYLVPAPELFSRHTGTCRVLGDKHQRTMDYHLEVGDFLRIGSVGLIVSELDPGQE-GEV---ESQGIGGAGGRLTVLRGI----EGGRGAGEAGAPSRQGQGPGSLPDGGNLPMMGEEDGRG-------TSSSGKAGRNRRSSRGSITEKDLFYLREDAGEIRQDLFAQEEAATAVQEGLAATALGLSPGRSPRVALCYMCFDDEDSSSNPLVAPCLCKGGTRYVHLSCLRTWQASAGDEKDCVL-TSAEMKTTCKICKAKYKTHVRTGDGRLLPLLEHHLPPPFICFLVVTKHDAAEELFNTQFQLSFSENKQILIGRSRNCHMVLDYRTVSTQHATVTYRKGGFYFRDLSSSNGSMLNLRRPMKLPYNQWVRIRYGRSIVAFKARRSWMRGRLSSMTGTG 518
The following BLAST results are available for this feature:
BLAST of NO05G04030.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27996.16.700e-19268.91fha domain protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04030NO05G04030Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04030.1NO05G04030.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04030.1.cds1NO05G04030.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G04030.1.cds2NO05G04030.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04030.1 ID=NO05G04030.1|Name=NO05G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp
ATGGGGTTGGCCTCGAGCACCATGGGGGCGGCAAGCAGCAGCAAGCAAGA
TAATTCATCCTCAGATCTCACGCAGCAAGATGGACACATCTGGGGTCGGA
CAAGTCTTCGCGTGAGCGGGGGGGATGATGGGGCGACCTGCGTCCAAGTT
AAAATCATGCCCCTTGTCCCCGGCAAAGCCAATCGGGAAGTCAAAACGTT
CAAAATCTCCTCCAATGGAGCCGTGCTCGAAGGTGGAATGACTCCCGAAA
TCCGAGATATTGCTCGTGAATACGAAAAGATGACTGGGGAAGCCCTCCCG
CGCATTTCAATCGACGATCGTCGCGCTCAGCAACTCCTCGTCTCGTGTGT
CGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCTTTTTTCGAGACACA
CAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGCGGACAACAGACTAT
CGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCTGTGGGGTTGATCGT
GTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGCGGCTGGTGGTGATA
GCAGCGACAGCGGCAGCAGCAGCGGCAACTGTAGAACTAATAATGGTACT
AGAATGATGCAGGAAAGTAGCATGGGTACAAGTCACGCTGCGAGCAACAG
ACGGGGCAACGCTAGCGGCAGCAGCGGGGACACTACCCAGGAAGGCGACT
TGGGAGCCACCAACGGAGGAAGGCGGCCACGCAACCCTTACCCCAACAAC
CACAGCAACACTTCCACGACCAACTACCACTCCGTCCCATTGGCAATTAC
GGAAAAAGATCTATTCTACCTCCGAGAGGACGTGGGCGAGCTGCGTAACG
ATCTTTTCGCACAGCAAGAGGCCGCCACCGCCGCCGAAGAAGGGCTAGCC
GCCGCTGCTGGTGGACTGACTCCGGGCCGCTCCCCCCGGGTCATTCAATG
CTACATGTGCTTCGATGATGAAGACACTGTAGAAAATCCTCTGGTCGCGC
CCTGCCTCTGCAAAGGCGGGACTCGCTATGTCCACCTTACCTGCCTCCAA
AAGTGGCAAGCATCTGCAGGGGACGACAAGGACTGTGTCGTCGCCACCAG
CGCCGAATTAAAAAACACCTGCAAAATCTGCAAATCCAAGTACAAGACAC
ACGTTCGTGCCAAGGACGGGCGGCTTCTTCCCCTTTTGGGACACCAGCTC
CCTCCTCCCTTCATTTGTTTCTTGGTCGTGACGAAGCACGACACGGCGGA
GGAACTGTTCAACACCCAGTTCCAATTATCGTTTGCGGAGAACAAGCAGA
TTTTGATTGGCCGGTCGAGGACTTGTCAGATGGTGTTGGATTACCGGACG
GTGTCCACTCAGCACGCTACTGTGACTTTTCGCAAGGGAGGCTTTTACTT
CAGGGATCTAAGCAGTAGTAACGGCTCGATGCTCAACTTGAGGAGGCCAA
TGAAATTGCCTTACAATCAATGGGTTCGAATCAGGTATGGACGATCGATC
GTGGCATTCAAAGCAAAAAGGAGCTGGATTAGGAGGAGGCTCTCGGCGAT
GCCCCCTGCTGGTACTGCTGCTGGAGGAGAAGGAGGGGGAGGGGGGGAGG
GGGGGGGGGAAGTGGCCGTTTGGCGGCGATAG
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protein sequence of NO05G04030.1

>NO05G04030.1-protein ID=NO05G04030.1-protein|Name=NO05G04030.1|organism=Nannochloropsis oceanica|type=polypeptide|length=544bp
MGLASSTMGAASSSKQDNSSSDLTQQDGHIWGRTSLRVSGGDDGATCVQV
KIMPLVPGKANREVKTFKISSNGAVLEGGMTPEIRDIAREYEKMTGEALP
RISIDDRRAQQLLVSCVGEDYYVAPAPELFSRHTGTCRVLGDKHQRTTDY
RLQVGDFLRIGSVGLIVSELHPGKELGRAAGGDSSDSGSSSGNCRTNNGT
RMMQESSMGTSHAASNRRGNASGSSGDTTQEGDLGATNGGRRPRNPYPNN
HSNTSTTNYHSVPLAITEKDLFYLREDVGELRNDLFAQQEAATAAEEGLA
AAAGGLTPGRSPRVIQCYMCFDDEDTVENPLVAPCLCKGGTRYVHLTCLQ
KWQASAGDDKDCVVATSAELKNTCKICKSKYKTHVRAKDGRLLPLLGHQL
PPPFICFLVVTKHDTAEELFNTQFQLSFAENKQILIGRSRTCQMVLDYRT
VSTQHATVTFRKGGFYFRDLSSSNGSMLNLRRPMKLPYNQWVRIRYGRSI
VAFKAKRSWIRRRLSAMPPAGTAAGGEGGGGGEGGGEVAVWRR*
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mRNA from alignment at chr5:1038968..1040763+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04030.1 ID=NO05G04030.1|Name=NO05G04030.1|organism=Nannochloropsis oceanica|type=mRNA|length=1796bp|location=Sequence derived from alignment at chr5:1038968..1040763+ (Nannochloropsis oceanica)
ATGGGGTTGGCCTCGAGCACCATGGGGGCGGCAAGCAGCAGCAAGCAAGA
TAATTCATCCTCAGATCTCACGCAGCAAGATGGACACATCTGGGGTCGGA
CAAGTCTTCGCGTGAGCGGGGGGGATGATGGGGCGACCTGGTACGTTTTG
CTCTATGAAGAGTAGAGAGGAGTATGAGAAACTAAATGGACCGTGGAAGC
AAGAGAGGGCTGTGAAACAGCTTAATATCTAAAAAGCACATCTCCAAACC
CAAAATAGTACAATTATTCGCGTCCTATCCCTTTCCCCTTTCCCAACCCA
ACAGCGTCCAAGTTAAAATCATGCCCCTTGTCCCCGGCAAAGCCAATCGG
GAAGTCAAAACGTTCAAAATCTCCTCCAATGGAGCCGTGCTCGAAGGTGG
AATGACTCCCGAAATCCGAGATATTGCTCGTGAATACGAAAAGATGACTG
GGGAAGCCCTCCCGCGCATTTCAATCGACGATCGTCGCGCTCAGCAACTC
CTCGTCTCGTGTGTCGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCT
TTTTTCGAGACACACAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGC
GGACAACAGACTATCGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCT
GTGGGGTTGATCGTGTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGC
GGCTGGTGGTGATAGCAGCGACAGCGGCAGCAGCAGCGGCAACTGTAGAA
CTAATAATGGTACTAGAATGATGCAGGAAAGTAGCATGGGTACAAGTCAC
GCTGCGAGCAACAGACGGGGCAACGCTAGCGGCAGCAGCGGGGACACTAC
CCAGGAAGGCGACTTGGGAGCCACCAACGGAGGAAGGCGGCCACGCAACC
CTTACCCCAACAACCACAGCAACACTTCCACGACCAACTACCACTCCGTC
CCATTGGCAATTACGGAAAAAGATCTATTCTACCTCCGAGAGGACGTGGG
CGAGCTGCGTAACGATCTTTTCGCACAGCAAGAGGCCGCCACCGCCGCCG
AAGAAGGGCTAGCCGCCGCTGCTGGTGGACTGACTCCGGGCCGCTCCCCC
CGGGTCATTCAATGCTACATGTGCTTCGATGATGAAGACACTGTAGAAAA
TCCTCTGGTCGCGCCCTGCCTCTGCAAAGGCGGGACTCGCTATGTCCACC
TTACCTGCCTCCAAAAGTGGCAAGCATCTGCAGGGGACGACAAGGACTGT
GTCGTCGCCACCAGCGCCGAATTAAAAAACACCTGCAAAATCTGCAAATC
CAAGTACAAGACACACGTTCGTGCCAAGGACGGGCGGCTTCTTCCCCTTT
TGGGACACCAGCTCCCTCCTCCCTTCATTTGTTTCTTGGTCGTGACGAAG
CACGACACGGCGGAGGAACTGTTCAACACCCAGTTCCAATTATCGTTTGC
GGAGAACAAGCAGATTTTGATTGGCCGGTCGAGGACTTGTCAGATGGTGT
TGGATTACCGGACGGTGTCCACTCAGCACGCTACTGTGACTTTTCGCAAG
GGAGGCTTTTACTTCAGGGATCTAAGCAGTAGTAACGGCTCGATGCTCAA
CTTGAGGAGGCCAATGAAATTGCCTTACAATCAATGGGTTCGAATCAGGT
ATGGACGATCGATCGTGGCATTCAAAGCAAAAAGGAGCTGGATTAGGAGG
AGGCTCTCGGCGATGCCCCCTGCTGGTACTGCTGCTGGAGGAGAAGGAGG
GGGAGGGGGGGAGGGGGGGGGGGAAGTGGCCGTTTGGCGGCGATAG
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Coding sequence (CDS) from alignment at chr5:1038968..1040763+

>NO05G04030.1 ID=NO05G04030.1|Name=NO05G04030.1|organism=Nannochloropsis oceanica|type=CDS|length=1632bp|location=Sequence derived from alignment at chr5:1038968..1040763+ (Nannochloropsis oceanica)
ATGGGGTTGGCCTCGAGCACCATGGGGGCGGCAAGCAGCAGCAAGCAAGA
TAATTCATCCTCAGATCTCACGCAGCAAGATGGACACATCTGGGGTCGGA
CAAGTCTTCGCGTGAGCGGGGGGGATGATGGGGCGACCTGCGTCCAAGTT
AAAATCATGCCCCTTGTCCCCGGCAAAGCCAATCGGGAAGTCAAAACGTT
CAAAATCTCCTCCAATGGAGCCGTGCTCGAAGGTGGAATGACTCCCGAAA
TCCGAGATATTGCTCGTGAATACGAAAAGATGACTGGGGAAGCCCTCCCG
CGCATTTCAATCGACGATCGTCGCGCTCAGCAACTCCTCGTCTCGTGTGT
CGGCGAAGACTACTACGTAGCGCCTGCACCAGAGCTTTTTTCGAGACACA
CAGGCACGTGTCGTGTCCTTGGCGATAAGCATCAGCGGACAACAGACTAT
CGGTTACAGGTGGGGGATTTCCTTCGCATTGGCTCTGTGGGGTTGATCGT
GTCCGAGCTGCACCCGGGGAAGGAATTGGGGCGTGCGGCTGGTGGTGATA
GCAGCGACAGCGGCAGCAGCAGCGGCAACTGTAGAACTAATAATGGTACT
AGAATGATGCAGGAAAGTAGCATGGGTACAAGTCACGCTGCGAGCAACAG
ACGGGGCAACGCTAGCGGCAGCAGCGGGGACACTACCCAGGAAGGCGACT
TGGGAGCCACCAACGGAGGAAGGCGGCCACGCAACCCTTACCCCAACAAC
CACAGCAACACTTCCACGACCAACTACCACTCCGTCCCATTGGCAATTAC
GGAAAAAGATCTATTCTACCTCCGAGAGGACGTGGGCGAGCTGCGTAACG
ATCTTTTCGCACAGCAAGAGGCCGCCACCGCCGCCGAAGAAGGGCTAGCC
GCCGCTGCTGGTGGACTGACTCCGGGCCGCTCCCCCCGGGTCATTCAATG
CTACATGTGCTTCGATGATGAAGACACTGTAGAAAATCCTCTGGTCGCGC
CCTGCCTCTGCAAAGGCGGGACTCGCTATGTCCACCTTACCTGCCTCCAA
AAGTGGCAAGCATCTGCAGGGGACGACAAGGACTGTGTCGTCGCCACCAG
CGCCGAATTAAAAAACACCTGCAAAATCTGCAAATCCAAGTACAAGACAC
ACGTTCGTGCCAAGGACGGGCGGCTTCTTCCCCTTTTGGGACACCAGCTC
CCTCCTCCCTTCATTTGTTTCTTGGTCGTGACGAAGCACGACACGGCGGA
GGAACTGTTCAACACCCAGTTCCAATTATCGTTTGCGGAGAACAAGCAGA
TTTTGATTGGCCGGTCGAGGACTTGTCAGATGGTGTTGGATTACCGGACG
GTGTCCACTCAGCACGCTACTGTGACTTTTCGCAAGGGAGGCTTTTACTT
CAGGGATCTAAGCAGTAGTAACGGCTCGATGCTCAACTTGAGGAGGCCAA
TGAAATTGCCTTACAATCAATGGGTTCGAATCAGGTATGGACGATCGATC
GTGGCATTCAAAGCAAAAAGGAGCTGGATTAGGAGGAGGCTCTCGGCGAT
GCCCCCTGCTGGTACTGCTGCTGGAGGAGAAGGAGGGGGAGGGGGGGAGG
GGGGGGGGGAAGTGGCCGTTTGGCGGCGATAG
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Synonyms
Publications