NO05G04010.1, NO05G04010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G04010.1
Unique NameNO05G04010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1701
Alignment locationchr5:1035145..1036845 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1035145..1036845 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G04010.1 vs.
Match: EWM27932.1 (hypothetical protein Naga_100008g47 [Nannochloropsis gaditana])

HSP 1 Score: 845.9 bits (2184), Expect = 7.300e-242
Identity = 422/570 (74.04%), Postives = 471/570 (82.63%), Query Frame = 0
Query:    1 MKADFVVGKYDFKDGDGTVPRLLYAGKAAADAAGLVDVGSGGAAGRVAVLRQAVEKVLGLQAGLGDGNVKASPFVSLVATFYVKMVEGTPCMDVLRPLVEGSSSNSTEGGGEEEEEEEKEEEDLSRPLRLGDIAGVVTEEMRKVQVIDLHTHLFPPSHGDLMLWGIDELLTYHYLIAEYFQTAPCAMTPDRFFALSKKGQADLIWEGLFIQRSPLSEACKGVLTTLGKLGLRKELRSRDLDAVRSWFAAQDPEVYCEKVFQLAGVKYCVMTNIPFDPVEAQHWRPEKKKYSRRFRSALRVDPLLKGDWKTVSACLKEAGYPLTLEGARQYLRDWATTMQPEYLMASTPHDFHFAEKEDRGRWSSSSRNGHEHGEE----GCGVTMLDTSPRGAELLEKVLIPVAKELSLPIAMKLGAHRAVNPTLRTGGDGVVTADVGDLRRLCSAYPDVKFLATFLARISQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITVMRIEILGTGFTAQHSDARVLDQLLYKWTHSRRVIGEVLAEEYALVAKTGWKVTKGEVRRDVVRLLGGAYEEFMRK 567
            + ADF  G Y F+DG+GTVPRLL A +AAA A GL D G    AGR+AVL  AV KVL LQAGL   +V A+PFVSLVA +YVKMV+G PCM+VLRP+VE + S         E+       +L RPLR G+IA VV +EM +VQV+DLHTHLFPPSHGDLMLWGID+LLTYHYLIAEYFQTAP AM P  FFA  K  QAD+IW  LF+QRSPLSEACKGVLTTL KLGLR+ELR+RDL  +R WFA QDP+ YCEKVF LAGVKYCVMTNIPFDP EA+HWRP KK Y+RRFRSALRVDPLLKGDW+TVSACL  A YP TLEGARQYLRDWA TMQPEYLMASTPHDF +A KE  G    SS++G + G+E    GCGVTM+D SP+GAELLEKVLIPVA+ELSLPIAMKLGAHRAVNP+L T GDG+V ADVGDLRRLC+A+P VKFLATFLAR+SQHEAAVLANKFPNLHLYGCWWYCNNPSIIREIT MR+EILGT FTAQHSDARVLDQL+YKW+HSRRVIGEVLA EY  +A+TGWK+T+ EVRRDV RLLGGAYEEFM+K
Sbjct:  428 LTADFEAGTYSFRDGEGTVPRLLQAAQAAAGAVGLADEGK---AGRIAVLHSAVSKVLSLQAGLD--SVAATPFVSLVAAYYVKMVDGAPCMEVLRPIVEEAISMKNIPVSAREDMGT----ELMRPLRPGEIARVVRDEMERVQVVDLHTHLFPPSHGDLMLWGIDDLLTYHYLIAEYFQTAPRAMAPASFFARPKAFQADMIWAALFVQRSPLSEACKGVLTTLEKLGLRQELRARDLSGIRRWFAEQDPDAYCEKVFSLAGVKYCVMTNIPFDPTEAKHWRPAKKAYTRRFRSALRVDPLLKGDWETVSACLTAANYPQTLEGARQYLRDWAETMQPEYLMASTPHDFQYAGKEGDGGSCQSSKDGKKGGQEGIGQGCGVTMIDKSPKGAELLEKVLIPVAEELSLPIAMKLGAHRAVNPSLGTAGDGLVAADVGDLRRLCTAHPQVKFLATFLARVSQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITAMRLEILGTAFTAQHSDARVLDQLIYKWSHSRRVIGEVLAGEYVSLAQTGWKLTREEVRRDVERLLGGAYEEFMQK 988          
The following BLAST results are available for this feature:
BLAST of NO05G04010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27932.17.300e-24274.04hypothetical protein Naga_100008g47 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G04010NO05G04010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G04010.1NO05G04010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G04010.1.cds1NO05G04010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp
ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG
GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG
GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC
CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG
AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA
AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG
GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA
GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG
CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC
ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA
TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC
CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA
GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA
GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG
AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG
GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA
CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC
GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG
GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA
GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT
GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT
TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG
AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA
CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG
AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT
CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG
GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC
ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA
ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA
GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT
TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA
GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG
CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG
GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA
A
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protein sequence of NO05G04010.1

>NO05G04010.1-protein ID=NO05G04010.1-protein|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp
MKADFVVGKYDFKDGDGTVPRLLYAGKAAADAAGLVDVGSGGAAGRVAVL
RQAVEKVLGLQAGLGDGNVKASPFVSLVATFYVKMVEGTPCMDVLRPLVE
GSSSNSTEGGGEEEEEEEKEEEDLSRPLRLGDIAGVVTEEMRKVQVIDLH
THLFPPSHGDLMLWGIDELLTYHYLIAEYFQTAPCAMTPDRFFALSKKGQ
ADLIWEGLFIQRSPLSEACKGVLTTLGKLGLRKELRSRDLDAVRSWFAAQ
DPEVYCEKVFQLAGVKYCVMTNIPFDPVEAQHWRPEKKKYSRRFRSALRV
DPLLKGDWKTVSACLKEAGYPLTLEGARQYLRDWATTMQPEYLMASTPHD
FHFAEKEDRGRWSSSSRNGHEHGEEGCGVTMLDTSPRGAELLEKVLIPVA
KELSLPIAMKLGAHRAVNPTLRTGGDGVVTADVGDLRRLCSAYPDVKFLA
TFLARISQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITVMRIEILGTG
FTAQHSDARVLDQLLYKWTHSRRVIGEVLAEEYALVAKTGWKVTKGEVRR
DVVRLLGGAYEEFMRK*
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mRNA from alignment at chr5:1035145..1036845+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at chr5:1035145..1036845+ (Nannochloropsis oceanica)
ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA A
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Coding sequence (CDS) from alignment at chr5:1035145..1036845+

>NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr5:1035145..1036845+ (Nannochloropsis oceanica)
ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG
GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG
GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC
CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG
AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA
AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG
GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA
GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG
CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC
ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA
TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC
CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA
GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA
GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG
AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG
GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA
CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC
GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG
GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA
GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT
GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT
TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG
AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA
CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG
AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT
CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG
GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC
ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA
ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA
GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT
TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA
GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG
CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG
GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA
A
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Synonyms
Publications