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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1035145..1036845 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G04010.1 vs.
Match: EWM27932.1 (hypothetical protein Naga_100008g47 [Nannochloropsis gaditana]) HSP 1 Score: 845.9 bits (2184), Expect = 7.300e-242 Identity = 422/570 (74.04%), Postives = 471/570 (82.63%), Query Frame = 0
Query: 1 MKADFVVGKYDFKDGDGTVPRLLYAGKAAADAAGLVDVGSGGAAGRVAVLRQAVEKVLGLQAGLGDGNVKASPFVSLVATFYVKMVEGTPCMDVLRPLVEGSSSNSTEGGGEEEEEEEKEEEDLSRPLRLGDIAGVVTEEMRKVQVIDLHTHLFPPSHGDLMLWGIDELLTYHYLIAEYFQTAPCAMTPDRFFALSKKGQADLIWEGLFIQRSPLSEACKGVLTTLGKLGLRKELRSRDLDAVRSWFAAQDPEVYCEKVFQLAGVKYCVMTNIPFDPVEAQHWRPEKKKYSRRFRSALRVDPLLKGDWKTVSACLKEAGYPLTLEGARQYLRDWATTMQPEYLMASTPHDFHFAEKEDRGRWSSSSRNGHEHGEE----GCGVTMLDTSPRGAELLEKVLIPVAKELSLPIAMKLGAHRAVNPTLRTGGDGVVTADVGDLRRLCSAYPDVKFLATFLARISQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITVMRIEILGTGFTAQHSDARVLDQLLYKWTHSRRVIGEVLAEEYALVAKTGWKVTKGEVRRDVVRLLGGAYEEFMRK 567
+ ADF G Y F+DG+GTVPRLL A +AAA A GL D G AGR+AVL AV KVL LQAGL +V A+PFVSLVA +YVKMV+G PCM+VLRP+VE + S E+ +L RPLR G+IA VV +EM +VQV+DLHTHLFPPSHGDLMLWGID+LLTYHYLIAEYFQTAP AM P FFA K QAD+IW LF+QRSPLSEACKGVLTTL KLGLR+ELR+RDL +R WFA QDP+ YCEKVF LAGVKYCVMTNIPFDP EA+HWRP KK Y+RRFRSALRVDPLLKGDW+TVSACL A YP TLEGARQYLRDWA TMQPEYLMASTPHDF +A KE G SS++G + G+E GCGVTM+D SP+GAELLEKVLIPVA+ELSLPIAMKLGAHRAVNP+L T GDG+V ADVGDLRRLC+A+P VKFLATFLAR+SQHEAAVLANKFPNLHLYGCWWYCNNPSIIREIT MR+EILGT FTAQHSDARVLDQL+YKW+HSRRVIGEVLA EY +A+TGWK+T+ EVRRDV RLLGGAYEEFM+K
Sbjct: 428 LTADFEAGTYSFRDGEGTVPRLLQAAQAAAGAVGLADEGK---AGRIAVLHSAVSKVLSLQAGLD--SVAATPFVSLVAAYYVKMVDGAPCMEVLRPIVEEAISMKNIPVSAREDMGT----ELMRPLRPGEIARVVRDEMERVQVVDLHTHLFPPSHGDLMLWGIDDLLTYHYLIAEYFQTAPRAMAPASFFARPKAFQADMIWAALFVQRSPLSEACKGVLTTLEKLGLRQELRARDLSGIRRWFAEQDPDAYCEKVFSLAGVKYCVMTNIPFDPTEAKHWRPAKKAYTRRFRSALRVDPLLKGDWETVSACLTAANYPQTLEGARQYLRDWAETMQPEYLMASTPHDFQYAGKEGDGGSCQSSKDGKKGGQEGIGQGCGVTMIDKSPKGAELLEKVLIPVAEELSLPIAMKLGAHRAVNPSLGTAGDGLVAADVGDLRRLCTAHPQVKFLATFLARVSQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITAMRLEILGTAFTAQHSDARVLDQLIYKWSHSRRVIGEVLAGEYVSLAQTGWKLTREEVRRDVERLLGGAYEEFMQK 988
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA A back to topprotein sequence of NO05G04010.1 >NO05G04010.1-protein ID=NO05G04010.1-protein|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=567bp MKADFVVGKYDFKDGDGTVPRLLYAGKAAADAAGLVDVGSGGAAGRVAVL RQAVEKVLGLQAGLGDGNVKASPFVSLVATFYVKMVEGTPCMDVLRPLVE GSSSNSTEGGGEEEEEEEKEEEDLSRPLRLGDIAGVVTEEMRKVQVIDLH THLFPPSHGDLMLWGIDELLTYHYLIAEYFQTAPCAMTPDRFFALSKKGQ ADLIWEGLFIQRSPLSEACKGVLTTLGKLGLRKELRSRDLDAVRSWFAAQ DPEVYCEKVFQLAGVKYCVMTNIPFDPVEAQHWRPEKKKYSRRFRSALRV DPLLKGDWKTVSACLKEAGYPLTLEGARQYLRDWATTMQPEYLMASTPHD FHFAEKEDRGRWSSSSRNGHEHGEEGCGVTMLDTSPRGAELLEKVLIPVA KELSLPIAMKLGAHRAVNPTLRTGGDGVVTADVGDLRRLCSAYPDVKFLA TFLARISQHEAAVLANKFPNLHLYGCWWYCNNPSIIREITVMRIEILGTG FTAQHSDARVLDQLLYKWTHSRRVIGEVLAEEYALVAKTGWKVTKGEVRR DVVRLLGGAYEEFMRK* back to topmRNA from alignment at chr5:1035145..1036845+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1701bp|location=Sequence derived from alignment at chr5:1035145..1036845+ (Nannochloropsis oceanica) ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG
GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG
GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC
CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG
AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA
AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG
GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA
GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG
CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC
ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA
TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC
CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA
GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA
GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG
AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG
GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA
CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC
GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG
GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA
GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT
GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT
TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG
AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA
CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG
AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT
CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG
GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC
ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA
ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA
GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT
TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA
GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG
CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG
GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA
A back to topCoding sequence (CDS) from alignment at chr5:1035145..1036845+ >NO05G04010.1 ID=NO05G04010.1|Name=NO05G04010.1|organism=Nannochloropsis oceanica|type=CDS|length=1701bp|location=Sequence derived from alignment at chr5:1035145..1036845+ (Nannochloropsis oceanica) ATGAAGGCTGATTTTGTGGTTGGAAAGTATGATTTCAAGGATGGAGATGG GACTGTGCCTCGGTTGCTCTACGCAGGTAAGGCGGCTGCGGATGCTGCCG GGCTCGTGGATGTGGGAAGCGGAGGGGCAGCAGGGAGGGTGGCAGTGCTC CGCCAGGCGGTAGAGAAGGTGTTGGGGTTACAGGCAGGCCTAGGGGACGG AAATGTGAAAGCTTCGCCTTTTGTATCTTTGGTGGCGACATTCTATGTTA AGATGGTGGAGGGGACACCGTGCATGGATGTGCTTCGACCGCTCGTGGAG GGTAGCAGTAGCAACAGCACGGAGGGAGGGGGGGAGGAGGAGGAGGAGGA GGAGAAGGAGGAGGAGGATCTGTCTCGGCCTTTGAGACTTGGGGATATCG CAGGGGTGGTGACAGAGGAAATGCGCAAGGTTCAAGTGATTGACTTGCAC ACACACCTCTTCCCTCCCTCCCATGGTGACTTGATGCTATGGGGGATCGA TGAACTCCTCACGTACCATTACCTCATCGCCGAGTATTTTCAGACGGCTC CGTGTGCCATGACACCTGATCGATTCTTCGCCTTGTCCAAAAAAGGGCAA GCTGATTTGATTTGGGAGGGACTGTTCATCCAGCGTTCGCCGTTGTCCGA GGCCTGCAAAGGCGTGCTCACCACGTTGGGAAAACTCGGCCTGCGGAAAG AATTGCGTTCCAGGGACTTGGATGCGGTGAGAAGCTGGTTTGCCGCACAG GACCCCGAGGTGTATTGCGAGAAGGTTTTCCAGCTTGCGGGGGTCAAGTA CTGCGTGATGACTAACATTCCGTTTGACCCTGTCGAAGCGCAGCATTGGC GGCCGGAGAAAAAGAAATACTCGCGTCGCTTTCGGTCGGCTTTGCGGGTG GACCCGTTGTTGAAAGGGGACTGGAAGACAGTAAGCGCGTGTTTGAAAGA GGCTGGCTACCCCCTGACGTTGGAGGGGGCCAGGCAGTATTTGCGCGATT GGGCGACCACGATGCAGCCTGAGTACCTAATGGCTTCCACACCCCATGAT TTCCATTTTGCAGAAAAAGAAGACAGGGGAAGGTGGAGCAGTAGCAGCAG AAACGGTCACGAGCATGGAGAGGAGGGGTGTGGGGTCACTATGCTCGATA CGTCGCCGCGAGGGGCCGAGCTGCTGGAGAAAGTCTTGATTCCAGTGGCG AAAGAATTGTCCCTACCAATCGCGATGAAACTAGGAGCGCACCGCGCCGT CAATCCCACTCTCCGAACGGGAGGGGACGGAGTGGTCACTGCTGATGTCG GGGACTTACGCCGGCTTTGTTCGGCGTACCCTGATGTAAAGTTTTTGGCC ACTTTCCTCGCAAGGATCAGTCAACATGAAGCTGCTGTGCTGGCGAATAA ATTCCCTAATTTGCATTTATATGGTTGTTGGTGGTATTGTAACAACCCGA GTATCATCAGGGAAATCACAGTGATGAGAATCGAGATTTTGGGGACGGGT TTCACAGCCCAGCACTCGGATGCGCGGGTCTTGGACCAGTTGCTTTACAA GTGGACGCACTCTCGACGGGTGATAGGGGAGGTTTTGGCGGAGGAGTACG CCTTGGTGGCGAAAACGGGGTGGAAAGTTACGAAGGGGGAGGTTAGGAGG GATGTGGTGCGGTTGTTGGGGGGCGCGTATGAAGAATTCATGCGGAAGTA A back to top
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