NO05G03980.1, NO05G03980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03980.1
Unique NameNO05G03980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length915
Alignment locationchr5:1030123..1031493 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1030123..1031493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03980.1 vs.
Match: EWM28037.1 (Arv1 protein [Nannochloropsis gaditana])

HSP 1 Score: 368.2 bits (944), Expect = 2.400e-98
Identity = 193/296 (65.20%), Postives = 228/296 (77.03%), Query Frame = 0 
Query:   34 AAVTVHGGDGYSLCIECGQSTIEGLYKEYSKDNIRLSRCDKCGAVADRLVEYELILVGLDLALHRLPAWRHILFNRQPHAKLQWPQLFRMAIVTVLIDTHIKYAVYVHYSSLAATSTQPPSHVDPTNTPTYQVALLLRILLLSFLEHVVFIGVVTCMVEWKIV----------------------VTRKLVQGLLYPTFGRLIVVFVMVWDPAIVVANLISLLVLSSQWQALRTVVSAAMAQRER---RKEKESIKGWRVEMDAAALPFVVGLICKIMLRLAAFRVDGSCTNLYLV 305
            A VT+HG DG SLCIECG+   EGLY+EYSKDNIRLSRC+ CGAVADRL+EYEL+LVGLDLALHRLPAWRHILFNRQPHAKL++ QL+RMA+V  L+DTHIKYA+YVHYSS++     PP+H+D T+TP YQ++LLLRILLLSF+EH VF G++  +  W +                       VTRKLVQ LL+P FGR IV+FVMVWDPA VVANLISLLVL SQWQALR VV+AA+A  ER   +++++S+K   VE  AAALPFVVGL CK +LRL AF VD SCTNLYLV
Sbjct:   33 ALVTIHGDDGCSLCIECGKPVTEGLYREYSKDNIRLSRCEFCGAVADRLIEYELVLVGLDLALHRLPAWRHILFNRQPHAKLEFAQLWRMALVLTLVDTHIKYAIYVHYSSIS-----PPNHLDLTDTPKYQLSLLLRILLLSFVEHFVFFGIIVFLTTWMLAVRLHLCRPQLRGPASTPYTRTFVTRKLVQALLFPNFGRCIVIFVMVWDPAFVVANLISLLVLLSQWQALRAVVAAAIALNERYNQQRKEDSVKRGNVEFYAAALPFVVGLSCKCLLRLVAFHVDASCTNLYLV 323
The following BLAST results are available for this feature:
BLAST of NO05G03980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28037.12.400e-9865.20Arv1 protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03980NO05G03980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03980.1NO05G03980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03980.1.cds1NO05G03980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03980.1.cds2NO05G03980.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03980.1.cds3NO05G03980.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03980.1.cds4NO05G03980.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03980.1 ID=NO05G03980.1|Name=NO05G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=915bp
ATGCCACGTCCAGGGGTCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGC
TGCCCCACCAGCCTTCTCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCG
CAGCAGTCACGGTCCACGGCGGGGATGGCTACAGCTTGTGCATCGAGTGC
GGCCAGTCCACCATCGAGGGCCTGTACAAGGAGTACTCCAAGGACAATAT
AAGGCTCTCGAGATGCGACAAATGCGGCGCCGTAGCGGACCGTCTGGTGG
AGTACGAACTCATTTTAGTAGGCCTAGATCTGGCGTTGCATCGCTTGCCG
GCCTGGCGACACATTCTCTTCAATCGACAACCCCATGCCAAGTTGCAATG
GCCCCAGCTCTTCCGCATGGCGATCGTCACAGTCTTGATCGACACCCACA
TCAAGTACGCAGTCTATGTTCACTACTCCTCCCTCGCTGCCACCAGCACA
CAGCCTCCCAGCCACGTCGACCCCACCAACACACCCACCTACCAAGTCGC
CCTTCTTCTCCGCATCCTCCTCCTTTCCTTTCTCGAGCATGTGGTATTTA
TCGGGGTTGTGACTTGCATGGTTGAGTGGAAAATAGTCGTTACAAGGAAG
CTGGTGCAAGGCCTTCTTTACCCGACATTTGGACGTTTGATCGTGGTCTT
TGTGATGGTTTGGGACCCTGCGATCGTCGTTGCCAATCTCATAAGTCTCC
TCGTCCTGTCCTCTCAATGGCAAGCGCTTCGAACTGTGGTTTCCGCGGCG
ATGGCGCAGAGAGAAAGAAGAAAGGAGAAGGAAAGTATAAAAGGTTGGAG
GGTAGAGATGGACGCAGCGGCACTGCCGTTTGTGGTAGGGTTGATATGCA
AAATAATGCTGCGTCTGGCGGCGTTTCGTGTGGATGGCTCGTGTACGAAT
CTGTATTTAGTGTAA
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protein sequence of NO05G03980.1

>NO05G03980.1-protein ID=NO05G03980.1-protein|Name=NO05G03980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=305bp
MPRPGVFPPTKAARRAAAPPAFSPAPLFSLPHTAAVTVHGGDGYSLCIEC
GQSTIEGLYKEYSKDNIRLSRCDKCGAVADRLVEYELILVGLDLALHRLP
AWRHILFNRQPHAKLQWPQLFRMAIVTVLIDTHIKYAVYVHYSSLAATST
QPPSHVDPTNTPTYQVALLLRILLLSFLEHVVFIGVVTCMVEWKIVVTRK
LVQGLLYPTFGRLIVVFVMVWDPAIVVANLISLLVLSSQWQALRTVVSAA
MAQRERRKEKESIKGWRVEMDAAALPFVVGLICKIMLRLAAFRVDGSCTN
LYLV*
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mRNA from alignment at chr5:1030123..1031493+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03980.1 ID=NO05G03980.1|Name=NO05G03980.1|organism=Nannochloropsis oceanica|type=mRNA|length=1371bp|location=Sequence derived from alignment at chr5:1030123..1031493+ (Nannochloropsis oceanica)
ATGCCACGTCCAGGGGTCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGC
TGCCCCACCAGCCTTCTCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCG
CAGCAGTCACGGTCCACGGCGGGGATGGCTACAGCTTGTGCATCGAGTGC
GGCCAGTCCACCATCGAGGGCCTGTACAAGGAGTACTCCAAGGACAATAT
AAGGCTCTCGAGATGCGTACGTGATACCTGGTCCTTTGTCGTCTCATCTA
CCTTTCGGCCTCTTTTCCTCACGCAGTTGTCATGCCCATCACTCATTCAT
CCAGGACAAATGCGGCGCCGTAGCGGACCGTCTGGTGGAGTACGAACTCA
TTTTAGTAGGCCTAGATCTGGCGTTGCATCGCTTGCCGGCCTGGCGACAC
ATTCTCTTCAATCGACAACCCCATGCCAAGTTGCAATGGCCCCAGGTATG
TGTGTGAAAGTGACCGCCGGCAGTTTTAGTCGATGGAGCGGGCGAAAATG
TAGGAGGACGCCCACCGATCTGATGGCTTGAAATATGGCCAGCTCTACTA
TTTACATGTCAAAAGTGTGACAAAACAGAGACATGTCAAAGTTTCCTTTC
TGCATTCATTTCTCCTGTCTTCCCTACTTCCCACCCTACCCAACAATCAA
CAAATCGATGAAGCTCTTCCGCATGGCGATCGTCACAGTCTTGATCGACA
CCCACATCAAGTACGCAGTCTATGTTCACTACTCCTCCCTCGCTGCCACC
AGCACACAGCCTCCCAGCCACGTCGACCCCACCAACACACCCACCTACCA
AGTCGCCCTTCTTCTCCGCATCCTCCTCCTTTCCTTTCTCGAGCATGTGG
TATTTATCGGGGTTGTGACTTGCATGGTTGAGTGGAAAATAGGTGCCCTA
CGACTGTCATGGTCACCAATTCATGCGCCTTCCTTGCCCTCGTCACCCCT
TTTCTCTGTCACGACACCCTCCCCCGCCGCCGCAGCCTCAAAGGTATCAC
TATCTAAAGCATCAAGGTCATTCTCCTCCTTTTTCTCTTCAGTCGTTACA
AGGAAGCTGGTGCAAGGCCTTCTTTACCCGACATTTGGACGTTTGATCGT
GGTCTTTGTGATGGTTTGGGACCCTGCGATCGTCGTTGCCAATCTCATAA
GTCTCCTCGTCCTGTCCTCTCAATGGCAAGCGCTTCGAACTGTGGTTTCC
GCGGCGATGGCGCAGAGAGAAAGAAGAAAGGAGAAGGAAAGTATAAAAGG
TTGGAGGGTAGAGATGGACGCAGCGGCACTGCCGTTTGTGGTAGGGTTGA
TATGCAAAATAATGCTGCGTCTGGCGGCGTTTCGTGTGGATGGCTCGTGT
ACGAATCTGTATTTAGTGTAA
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Coding sequence (CDS) from alignment at chr5:1030123..1031493+

>NO05G03980.1 ID=NO05G03980.1|Name=NO05G03980.1|organism=Nannochloropsis oceanica|type=CDS|length=915bp|location=Sequence derived from alignment at chr5:1030123..1031493+ (Nannochloropsis oceanica)
ATGCCACGTCCAGGGGTCTTTCCTCCCACCAAAGCTGCTCGTCGTGCCGC
TGCCCCACCAGCCTTCTCCCCTGCCCCTCTCTTTTCCCTTCCTCACACCG
CAGCAGTCACGGTCCACGGCGGGGATGGCTACAGCTTGTGCATCGAGTGC
GGCCAGTCCACCATCGAGGGCCTGTACAAGGAGTACTCCAAGGACAATAT
AAGGCTCTCGAGATGCGACAAATGCGGCGCCGTAGCGGACCGTCTGGTGG
AGTACGAACTCATTTTAGTAGGCCTAGATCTGGCGTTGCATCGCTTGCCG
GCCTGGCGACACATTCTCTTCAATCGACAACCCCATGCCAAGTTGCAATG
GCCCCAGCTCTTCCGCATGGCGATCGTCACAGTCTTGATCGACACCCACA
TCAAGTACGCAGTCTATGTTCACTACTCCTCCCTCGCTGCCACCAGCACA
CAGCCTCCCAGCCACGTCGACCCCACCAACACACCCACCTACCAAGTCGC
CCTTCTTCTCCGCATCCTCCTCCTTTCCTTTCTCGAGCATGTGGTATTTA
TCGGGGTTGTGACTTGCATGGTTGAGTGGAAAATAGTCGTTACAAGGAAG
CTGGTGCAAGGCCTTCTTTACCCGACATTTGGACGTTTGATCGTGGTCTT
TGTGATGGTTTGGGACCCTGCGATCGTCGTTGCCAATCTCATAAGTCTCC
TCGTCCTGTCCTCTCAATGGCAAGCGCTTCGAACTGTGGTTTCCGCGGCG
ATGGCGCAGAGAGAAAGAAGAAAGGAGAAGGAAAGTATAAAAGGTTGGAG
GGTAGAGATGGACGCAGCGGCACTGCCGTTTGTGGTAGGGTTGATATGCA
AAATAATGCTGCGTCTGGCGGCGTTTCGTGTGGATGGCTCGTGTACGAAT
CTGTATTTAGTGTAA
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Synonyms
Publications