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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:1013554..1014912 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03920.1 vs.
Match: EWM28016.1 (eukaryotic translation initiation factor 5 [Nannochloropsis gaditana]) HSP 1 Score: 609.0 bits (1569), Expect = 1.200e-170 Identity = 345/450 (76.67%), Postives = 391/450 (86.89%), Query Frame = 0
Query: 1 MNIAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKASKDGKSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKKKDKDDREKKKKKK-EKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSSDEDEDEEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQVLDEVRMIATFSALSIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILNVDAEAYQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLEWAEEEGPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEEEEED 450
MNIAGLNP+EDANYRYKMPRILAKVEGRGNGIKTVVINMK+VA ALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAH+APALQ LCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKA+K+GK KEAKEKKKK R+K ADA ++D DEDG A G+EKEKKKKKKKDK+++EKKKKKK EK+EK+SEAGSSDGDGNG G NG +S + S + +E+EE E+GE+VA +DNLAVEDATA A A+GRL+ FL+++P A A+Q+L+E+RMIATFSAL +E+R FLFVQAAFGP+A ++N + +H KVLKGL+L+VD E YQRRLIGV+EHLCAVTH E+L K FP+LLKQLYDE VVDEEVFLEWAEEEGPTEFTRREV+ MVE LR EA KFVTWL EA S SEE+ EE EE+
Sbjct: 2 MNIAGLNPVEDANYRYKMPRILAKVEGRGNGIKTVVINMKEVAQALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHTAPALQTSLCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKAAKEGKGTKEAKEKKKKDRSK--ADAEDDDLDEDGGA-EGEEKEKKKKKKKDKEEKEKKKKKKREKREKASEAGSSDGDGNGMGTSNGKTSKQGSSDDDEGEGEEEEEEEEGEVVARLDNLAVEDATALAGAIGRLQHFLNSNPSAGASQILEEIRMIATFSALPVEERPFLFVQAAFGPEAGRENAIRRHQKVLKGLMLSVDEEMYQRRLIGVMEHLCAVTHAESLHKWFPVLLKQLYDEGVVDEEVFLEWAEEEGPTEFTRREVTPAMVESLRKEAGKFVTWLTEA-ASDSEEESGGEESEEE 447
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC GAGGACTAA back to topprotein sequence of NO05G03920.1 >NO05G03920.1-protein ID=NO05G03920.1-protein|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp MNIAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASALHRMP AEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQGFVLCP SCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKASKDG KSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKKKDKDD REKKKKKKEKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSSDEDED EEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQVLDEVR MIATFSALSIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILNVDAEA YQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLEWAEEE GPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEEEEEDS ED* back to topmRNA from alignment at chr5:1013554..1014912+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at chr5:1013554..1014912+ (Nannochloropsis oceanica) ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA
AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA
CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC
GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA
CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG
CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC
TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA
TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA
AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG
AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC
CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG
GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC
AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC
GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA
GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC
GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT
TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT
TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG
ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT
TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA
AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG
TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA
CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG
ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG
GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT
GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG
AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC
GAGGACTAA back to topCoding sequence (CDS) from alignment at chr5:1013554..1014912+ >NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr5:1013554..1014912+ (Nannochloropsis oceanica) ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC GAGGACTAA back to top
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