NO05G03920.1, NO05G03920.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03920.1
Unique NameNO05G03920.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1359
Alignment locationchr5:1013554..1014912 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1013554..1014912 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03920.1 vs.
Match: EWM28016.1 (eukaryotic translation initiation factor 5 [Nannochloropsis gaditana])

HSP 1 Score: 609.0 bits (1569), Expect = 1.200e-170
Identity = 345/450 (76.67%), Postives = 391/450 (86.89%), Query Frame = 0
Query:    1 MNIAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKASKDGKSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKKKDKDDREKKKKKK-EKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSSDEDEDEEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQVLDEVRMIATFSALSIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILNVDAEAYQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLEWAEEEGPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEEEEED 450
            MNIAGLNP+EDANYRYKMPRILAKVEGRGNGIKTVVINMK+VA ALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAH+APALQ  LCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKA+K+GK  KEAKEKKKK R+K  ADA ++D DEDG A  G+EKEKKKKKKKDK+++EKKKKKK EK+EK+SEAGSSDGDGNG G  NG +S + S      + +E+EE E+GE+VA +DNLAVEDATA A A+GRL+ FL+++P A A+Q+L+E+RMIATFSAL +E+R FLFVQAAFGP+A ++N + +H KVLKGL+L+VD E YQRRLIGV+EHLCAVTH E+L K FP+LLKQLYDE VVDEEVFLEWAEEEGPTEFTRREV+  MVE LR EA KFVTWL EA  S SEE+   EE EE+
Sbjct:    2 MNIAGLNPVEDANYRYKMPRILAKVEGRGNGIKTVVINMKEVAQALHRMPAEVTKFFGTELGAQTTYREETERAVVNGAHTAPALQTSLCRYIQGFVLCPSCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKAAKEGKGTKEAKEKKKKDRSK--ADAEDDDLDEDGGA-EGEEKEKKKKKKKDKEEKEKKKKKKREKREKASEAGSSDGDGNGMGTSNGKTSKQGSSDDDEGEGEEEEEEEEGEVVARLDNLAVEDATALAGAIGRLQHFLNSNPSAGASQILEEIRMIATFSALPVEERPFLFVQAAFGPEAGRENAIRRHQKVLKGLMLSVDEEMYQRRLIGVMEHLCAVTHAESLHKWFPVLLKQLYDEGVVDEEVFLEWAEEEGPTEFTRREVTPAMVESLRKEAGKFVTWLTEA-ASDSEEESGGEESEEE 447          
The following BLAST results are available for this feature:
BLAST of NO05G03920.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28016.11.200e-17076.67eukaryotic translation initiation factor 5 [Nannoc... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03920NO05G03920Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03920.1NO05G03920.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03920.1.cds1NO05G03920.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp
ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA
AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA
CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC
GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA
CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG
CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC
TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA
TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA
AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG
AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC
CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG
GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC
AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC
GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA
GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC
GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT
TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT
TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG
ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT
TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA
AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG
TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA
CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG
ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG
GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT
GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG
AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC
GAGGACTAA
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protein sequence of NO05G03920.1

>NO05G03920.1-protein ID=NO05G03920.1-protein|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MNIAGLNPIEDANYRYKMPRILAKVEGRGNGIKTVVINMKDVASALHRMP
AEVTKFFGTELGAQTTYREETERAVVNGAHSAPALQALLCRYIQGFVLCP
SCGLPETAYKIKGGVIYQKCDACGEKSMCDMSHKLTTFIINTHKKASKDG
KSVKEAKEKKKKVRAKAEADAGEEDGDEDGEAGGGKEKEKKKKKKKDKDD
REKKKKKKEKKEKSSEAGSSDGDGNGNGLVNGSSSSKKSGGGSSSDEDED
EEGEDGELVATMDNLAVEDATAFAAAVGRLEQFLSAHPEATAAQVLDEVR
MIATFSALSIEDRLFLFVQAAFGPDAAKQNMVGKHVKVLKGLILNVDAEA
YQRRLIGVIEHLCAVTHKETLLKMFPLLLKQLYDEEVVDEEVFLEWAEEE
GPTEFTRREVSEEMVEMLRGEAEKFVTWLKEAEESGSEEDEESEEEEEDS
ED*
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mRNA from alignment at chr5:1013554..1014912+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=mRNA|length=1359bp|location=Sequence derived from alignment at chr5:1013554..1014912+ (Nannochloropsis oceanica)
ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC GAGGACTAA
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Coding sequence (CDS) from alignment at chr5:1013554..1014912+

>NO05G03920.1 ID=NO05G03920.1|Name=NO05G03920.1|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at chr5:1013554..1014912+ (Nannochloropsis oceanica)
ATGAACATAGCGGGGCTCAACCCCATCGAAGACGCCAACTATCGGTACAA
AATGCCCCGCATCTTGGCTAAAGTGGAGGGGCGTGGAAACGGGATAAAAA
CCGTCGTTATCAACATGAAAGACGTCGCCTCTGCCCTCCACCGCATGCCC
GCAGAAGTCACCAAATTCTTTGGCACGGAACTTGGCGCCCAGACCACCTA
CAGGGAAGAAACGGAGCGAGCGGTGGTGAACGGCGCGCATTCTGCGCCTG
CGCTGCAGGCGCTTTTGTGCCGGTACATCCAGGGGTTTGTCCTTTGTCCC
TCTTGTGGGTTGCCTGAGACGGCCTACAAGATCAAAGGGGGGGTGATTTA
TCAGAAATGTGACGCGTGTGGGGAGAAGAGTATGTGTGATATGAGTCATA
AATTGACGACATTCATCATTAACACGCATAAGAAGGCGAGTAAGGATGGG
AAGAGCGTCAAGGAGGCAAAGGAGAAGAAGAAGAAGGTGCGGGCCAAGGC
CGAGGCGGACGCGGGGGAGGAGGACGGAGATGAAGACGGGGAGGCTGGAG
GGGGAAAAGAGAAGGAGAAGAAAAAGAAGAAGAAAAAGGATAAGGACGAC
AGGGAGAAGAAGAAGAAGAAGAAGGAGAAAAAGGAGAAAAGCTCTGAGGC
GGGTAGCAGTGACGGGGACGGGAACGGCAACGGCCTGGTCAATGGCAGCA
GCAGTAGCAAGAAATCCGGCGGTGGCTCCTCCTCGGACGAAGATGAAGAC
GAGGAAGGAGAAGACGGAGAGTTGGTGGCTACGATGGATAATCTGGCCGT
TGAGGACGCGACCGCTTTCGCGGCTGCTGTTGGGAGGTTGGAGCAGTTCT
TGAGTGCCCACCCGGAAGCGACGGCGGCGCAGGTGTTGGATGAGGTGAGG
ATGATTGCGACTTTTTCGGCATTGTCCATTGAAGATCGGTTATTCTTGTT
TGTCCAGGCAGCATTTGGGCCGGATGCGGCGAAGCAAAACATGGTGGGGA
AGCATGTGAAGGTCTTGAAGGGATTAATTTTGAATGTCGACGCCGAGGCG
TACCAGCGGCGGTTGATTGGAGTGATAGAGCATCTATGTGCCGTCACGCA
CAAGGAGACGCTGCTGAAGATGTTTCCTCTGTTGCTGAAGCAGCTGTATG
ATGAGGAGGTGGTGGACGAAGAGGTGTTTTTGGAGTGGGCGGAGGAGGAG
GGCCCTACTGAGTTCACACGACGAGAGGTGAGTGAGGAAATGGTGGAGAT
GTTGAGGGGGGAAGCGGAGAAATTTGTGACGTGGTTGAAGGAGGCGGAGG
AGAGTGGGTCAGAGGAGGATGAGGAGAGCGAGGAGGAGGAGGAGGACAGC
GAGGACTAA
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Synonyms
Publications