NO05G03850.1, NO05G03850.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03850.1
Unique NameNO05G03850.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2509
Alignment locationchr5:1000331..1003071 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:1000331..1003071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03850.1 vs.
Match: EWM27946.1 (peptidyl-prolyl cis-trans isomerase [Nannochloropsis gaditana])

HSP 1 Score: 404.1 bits (1037), Expect = 4.300e-109
Identity = 212/298 (71.14%), Postives = 252/298 (84.56%), Query Frame = 0 
Query:   32 PARRARQVAVHANSPSSSSSSSSSIPDRRQAITTFTSSLVAATAAASLLGPSPPPANAAATNEADGLPPYPAEVTAKAYFDIRITGFVTGEEKATSEDFVGRLVFGLFGNAAPLAVGEFLKYSKAKYGGNLPSYAFSNFIKRTPGVSVQAGRIKGLKEIEIAGSRQYEYGDQVLGSRGIDEPKLNLKHDRRGLLTKSSSQDAIDSQFDITLGPLPALDNGDSLVFGVVLEGQAALDAIENVPIYTYESTGDQPEALNELFSQQKKLFLSVAKSLNDERAVNRQGSFLKRVEVLDVGVL 330
            P+ ++   +  + S S +SSSS +  DRRQA+ + TSS+  AT AA +      P+NAA  N A  LP YPAE+TAKA+FD+RITGFVTGEEKATSEDFVGR+VFGLFG AAP+ VGEF+KY+KA YGGN PSYAFS+  KRTPGVSV+AGRIKGLKEIEIAG+R+YEYGDQ+LG++G+DEP L LKHDRRGLLTKSS+QDA+D  F++TLGP PALDNGDS+VFG++LEGQ ALDA+E VPIYTYES G+QPEALN LF+ QKKLFLS+AKSLNDERAVNRQGSFLKRVEVL+VG+L
Sbjct:   67 PSSQSSSSSSSSFSSSVASSSSFAQSDRRQALASLTSSIAIATCAAVITYTPLSPSNAATKN-AKRLP-YPAEITAKAFFDVRITGFVTGEEKATSEDFVGRMVFGLFGKAAPIVVGEFIKYTKAPYGGNFPSYAFSSLTKRTPGVSVEAGRIKGLKEIEIAGTREYEYGDQLLGAKGMDEPTLALKHDRRGLLTKSSTQDAVDPVFEMTLGPQPALDNGDSIVFGILLEGQEALDAMEKVPIYTYESAGEQPEALNSLFTNQKKLFLSMAKSLNDERAVNRQGSFLKRVEVLNVGLL 362
The following BLAST results are available for this feature:
BLAST of NO05G03850.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27946.14.300e-10971.14peptidyl-prolyl cis-trans isomerase [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03850NO05G03850Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03850.1NO05G03850.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03850.1.cds1NO05G03850.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03850.1.cds2NO05G03850.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03850.1.cds3NO05G03850.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03850.1 ID=NO05G03850.1|Name=NO05G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2509bp
CTCCTCATTTTCCTTCTTTGAGTGTACATATAAACCAACCAAGTCCTCAC
TTCTTCAGCCTCTGGGCTTCTTCCTCCGCGTATGGATCTTTCTCCAAGGG
CACTCTATAATCGGTCGAACTTTGGCTACCCTCTTCCTTCCCTCCTTTCC
CCGCTACATCCCACTTCTCTTGGAAGGGCCCACAAGTTGACGGACTCGCC
GGGGCCATTGCGGCCAGATTAGCCAAGGCAGTATGCATCACTGCGACAAT
TGTCCCTGTCCATGGTACTTTTTGCAATGCCCCCATCATGGCAGGCTGTG
CCAAAGAAGCAACCGCTGAGGCCATGGCGGAGGCGGCGGTCTGGAAGGCT
AGAACCCCCTCCTGCACATTGGTAGGGGCATGCGACAAAGCCTCAACATC
CCGAAGTCGCCTTTCCAAAAATGCCCAGGTGTCCTGATAATCCTCTGAGT
AATCCGTCAGGAAAAATAATTCCGTGGCTACGTAAACCGAGCAGACGGTG
GCGCGATGCGCGTACCAATTTGTCAAGTCCATCCCCTCATCCTTCTCCGT
GGTCACACACAACTCGTCCGCCACTTCCGCCAATCCCCGTGCGGTTGTCT
CCAAATTGTGCGGCGACAACCCTAGCGCCAAGGCTTGTGGCCATTGTGCT
AAATAGGGGGCAATTAATCGCAGGCGCCATCGAATCGCTCGCTCCAACCT
CTCACGTGACGAGGGCAAAGAAGCCAATTCGTCTTGACGCGCCTCAAGCT
CGGCGACCCATGCAGCATCAATTTGTGCCATAGCGTACTCCACCAATTCA
ATGGCACCCCGTCCAAACATGCCGTGCGCTACGGCAGGAAACCCGAGTGA
GGCAGCACCAGCTGCCAAGGTCTCTTCGGTCCAACCATGCTTGGCGACTA
GGGGCAATGCCGCCGCAAGGATCTCTTGTCGCGGGTCTTGGAAAGTCGCG
GCATGTGGCGTGGCAGGCGGAGGCGCATCTGTGCTACTGTCGTTGGACAC
ATCGGCAGCGGTGGTGGTGGTGGCAAAAGCTCTCTTTGTGGGTTTGGTGT
TGAGGTGGCCTGGACGATGCGGCACTAGCACCGTCTGACTCTTTGCGGCC
AGATGCTGGGGAGAGGCCAGGCACCGGCGGGCTAGAACAACGGCAGAGAG
GGCCGGACGTCCACGCATCATTACCTACCTGAATAAGGTTGTGTTGTGTT
GTGTGTGAGGCCTAAAAAGATGCGTGATGATAAATCGACATTGCGTCGCT
CATGTATCACGATCATCGCGTCAAGAACTATTCTTTCCCCATTCCACAGA
CACGCTCAAGCGCTTGCCGCCCTCCTTCGCCACTTTAAGATGACAAGTTT
TTGAGTTTGCACTGCCCCGCCTTCTCCCTCCCACTCCCACTCTCCAAAGA
CAGCGCCACGCGGTTGTGCTGCAGCAACGCAGCCATACCGCACGATGAAG
CAGAACAATGAACTGCAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCT
CATCATCCCCGCTACTACAGCCTTTCACAATAAAGCACCAGCAAGAAGAG
CTCGCCAGGTCGCTGTCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCG
TCCTCCTCCATACCAGACCGCCGCCAGGCCATTACAACTTTCACCTCCTC
CCTCGTCGCCGCGACCGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCAC
CCGCAAATGCCGCGGCGACCAATGAAGCAGATGGCTTGCCTCCGTATCCT
GCCGAAGTGACAGCCAAGGCTTACTTTGACATCCGCATCACGGGTTTCGT
GACTGGGGAGGAAAAAGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCT
TCGGTCTATTCGGGAATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAG
TACAGCAAGGCCAAATACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAA
TTTCATCAAACGTACACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGG
GGTTGAAAGAGATTGAGATTGCGGGGTCGAGGCAGTACGAGTACGGGGAC
CAGGTGTTGGGGAGCAGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCA
TGATAGAAGGGGGTTGTTGACAAAGAGCAGCTCCCAGGATGCTATTGACT
CCCAGTTTGATATCACGCTGGGGCCACTTCCTGCATTGGACAATGGCGAT
TCGTTGGTTTTTGGAGTCGTGCTGGAGGGACAGGCAGCCCTAGACGCGAT
TGAAAATGTTCCGATCTACACTTATGAAAGCACAGGCGACCAACCCGAGG
CCCTCAACGAGCTCTTCTCCCAACAGAAGAAGTTGTTTTTATCCGTTGCC
AAATCCTTGAACGATGAACGTGCAGTAAATCGGCAAGGATCATTCTTGAA
GCGGGTAGAGGTACTGGATGTGGGGGTGCTGTAGCTGCTGTAGTTACCAG
GAATCAGAAAGTAGGATACAGATAATAGGGACATCAATAAAGAAAGAGAC
GAAATTAGG
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protein sequence of NO05G03850.1

>NO05G03850.1-protein ID=NO05G03850.1-protein|Name=NO05G03850.1|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MKQNNELQAVVLPVLLVLLIIPATTAFHNKAPARRARQVAVHANSPSSSS
SSSSSIPDRRQAITTFTSSLVAATAAASLLGPSPPPANAAATNEADGLPP
YPAEVTAKAYFDIRITGFVTGEEKATSEDFVGRLVFGLFGNAAPLAVGEF
LKYSKAKYGGNLPSYAFSNFIKRTPGVSVQAGRIKGLKEIEIAGSRQYEY
GDQVLGSRGIDEPKLNLKHDRRGLLTKSSSQDAIDSQFDITLGPLPALDN
GDSLVFGVVLEGQAALDAIENVPIYTYESTGDQPEALNELFSQQKKLFLS
VAKSLNDERAVNRQGSFLKRVEVLDVGVL*
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mRNA from alignment at chr5:1000331..1003071+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03850.1 ID=NO05G03850.1|Name=NO05G03850.1|organism=Nannochloropsis oceanica|type=mRNA|length=2741bp|location=Sequence derived from alignment at chr5:1000331..1003071+ (Nannochloropsis oceanica)
CTCCTCATTTTCCTTCTTTGAGTGTACATATAAACCAACCAAGTCCTCAC
TTCTTCAGCCTCTGGGCTTCTTCCTCCGCGTATGGATCTTTCTCCAAGGG
CACTCTATAATCGGTCGAACTTTGGCTACCCTCTTCCTTCCCTCCTTTCC
CCGCTACATCCCACTTCTCTTGGAAGGGCCCACAAGTTGACGGACTCGCC
GGGGCCATTGCGGCCAGATTAGCCAAGGCAGTATGCATCACTGCGACAAT
TGTCCCTGTCCATGGTACTTTTTGCAATGCCCCCATCATGGCAGGCTGTG
CCAAAGAAGCAACCGCTGAGGCCATGGCGGAGGCGGCGGTCTGGAAGGCT
AGAACCCCCTCCTGCACATTGGTAGGGGCATGCGACAAAGCCTCAACATC
CCGAAGTCGCCTTTCCAAAAATGCCCAGGTGTCCTGATAATCCTCTGAGT
AATCCGTCAGGAAAAATAATTCCGTGGCTACGTAAACCGAGCAGACGGTG
GCGCGATGCGCGTACCAATTTGTCAAGTCCATCCCCTCATCCTTCTCCGT
GGTCACACACAACTCGTCCGCCACTTCCGCCAATCCCCGTGCGGTTGTCT
CCAAATTGTGCGGCGACAACCCTAGCGCCAAGGCTTGTGGCCATTGTGCT
AAATAGGGGGCAATTAATCGCAGGCGCCATCGAATCGCTCGCTCCAACCT
CTCACGTGACGAGGGCAAAGAAGCCAATTCGTCTTGACGCGCCTCAAGCT
CGGCGACCCATGCAGCATCAATTTGTGCCATAGCGTACTCCACCAATTCA
ATGGCACCCCGTCCAAACATGCCGTGCGCTACGGCAGGAAACCCGAGTGA
GGCAGCACCAGCTGCCAAGGTCTCTTCGGTCCAACCATGCTTGGCGACTA
GGGGCAATGCCGCCGCAAGGATCTCTTGTCGCGGGTCTTGGAAAGTCGCG
GCATGTGGCGTGGCAGGCGGAGGCGCATCTGTGCTACTGTCGTTGGACAC
ATCGGCAGCGGTGGTGGTGGTGGCAAAAGCTCTCTTTGTGGGTTTGGTGT
TGAGGTGGCCTGGACGATGCGGCACTAGCACCGTCTGACTCTTTGCGGCC
AGATGCTGGGGAGAGGCCAGGCACCGGCGGGCTAGAACAACGGCAGAGAG
GGCCGGACGTCCACGCATCATTACCTACCTGAATAAGGTTGTGTTGTGTT
GTGTGTGAGGCCTAAAAAGATGCGTGATGATAAATCGACATTGCGTCGCT
CATGTATCACGATCATCGCGTCAAGAACTATTCTTTCCCCATTCCACAGA
CACGCTCAAGCGCTTGCCGCCCTCCTTCGCCACTTTAAGATGACAAGTTT
TTGAGTTTGCACTGCCCCGCCTTCTCCCTCCCACTCCCACTCTCCAAAGA
CAGCGCCACGCGGTTGTGCTGCAGCAACGCAGCCATACCGCACGATGAAG
CAGAACAATGAACTGCAAGCTGTCGTCCTCCCCGTCCTCCTCGTCCTCCT
CATCATCCCCGCTACTACAGCCTTTCACAATAAAGCACCAGCAAGAAGAG
CTCGCCAGGTCGCTGTCCATGCCAACTCGCCCTCCTCGTCCTCCTCCTCG
TCCTCCTCCATACCAGACCGCCGCCAGGCCATTACAACTTTCACCTCCTC
CCTCGTCGCCGCGACCGCTGCAGCCTCCCTCCTTGGGCCCTCCCCACCAC
CCGCAAATGCCGCGGCGACCAATGAAGCAGATGGCTTGCCTCCGTATCCT
GCCGAAGTGACAGCCAAGGCTTACTTTGACATCCGCATCACGGGTTTCGT
GACTGGGGAGGAAAAAGCGACTTCGGAGGACTTCGTGGGTCGTTTGGTCT
TCGGTCTATTCGGGAATGCCGCGCCTTTGGCCGTGGGGGAGTTCTTGAAG
TACAGCAAGGCCAAATACGGAGGAAATCTGCCCAGTTATGCGTTTTCAAA
TTTCATCAAACGTACACCAGGAGTGTCGGTGCAAGCGGGGCGGATTAAGG
GGTTGAAAGAGATTGAGATTGCGGGGTCGAGGCAGTACGAGTACGGGGAC
CAGGTGTTGGGGAGCAGGGGGATAGATGAGCCCAAGCTGAACTTGAAGCA
TGATAGAAGGGGGTTGTTGACAAAGAGCAGGTAAGTGCACCGTGGTTCTT
TTATTTATTCGTCCTTTTATTCAATTTACCAGTCTATTTTCACAGCTCCC
AGGATGCTATTGACTCCCAGTTTGATATCACGCTGGGGCCACTTCCTGCA
TTGGACAATGGCGATTCGTTGGTTTTTGGAGTCGTGCTGGAGGGACAGGC
AGCCCTAGACGCGATTGAAAATGTGCGTATTTGTCTGTCATGAAGTGTGC
GTCTGCAATTTTATACGTGAGCAGCTCTTCAGTCCTGCTCCATATTATCA
CCTTCATTGAGCTTTATTCTCACTCTCCCTAAACCATTCCTCCCTCTTTC
CATTCCTTCCTCCCTTCTACCCATCCCTCCTACACACAGGTTCCGATCTA
CACTTATGAAAGCACAGGCGACCAACCCGAGGCCCTCAACGAGCTCTTCT
CCCAACAGAAGAAGTTGTTTTTATCCGTTGCCAAATCCTTGAACGATGAA
CGTGCAGTAAATCGGCAAGGATCATTCTTGAAGCGGGTAGAGGTACTGGA
TGTGGGGGTGCTGTAGCTGCTGTAGTTACCAGGAATCAGAAAGTAGGATA
CAGATAATAGGGACATCAATAAAGAAAGAGACGAAATTAGG
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Coding sequence (CDS) from alignment at chr5:1000331..1003071+

>NO05G03850.1 ID=NO05G03850.1|Name=NO05G03850.1|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at chr5:1000331..1003071+ (Nannochloropsis oceanica)
ATGAAGCAGAACAATGAACTGCAAGCTGTCGTCCTCCCCGTCCTCCTCGT
CCTCCTCATCATCCCCGCTACTACAGCCTTTCACAATAAAGCACCAGCAA
GAAGAGCTCGCCAGGTCGCTGTCCATGCCAACTCGCCCTCCTCGTCCTCC
TCCTCGTCCTCCTCCATACCAGACCGCCGCCAGGCCATTACAACTTTCAC
CTCCTCCCTCGTCGCCGCGACCGCTGCAGCCTCCCTCCTTGGGCCCTCCC
CACCACCCGCAAATGCCGCGGCGACCAATGAAGCAGATGGCTTGCCTCCG
TATCCTGCCGAAGTGACAGCCAAGGCTTACTTTGACATCCGCATCACGGG
TTTCGTGACTGGGGAGGAAAAAGCGACTTCGGAGGACTTCGTGGGTCGTT
TGGTCTTCGGTCTATTCGGGAATGCCGCGCCTTTGGCCGTGGGGGAGTTC
TTGAAGTACAGCAAGGCCAAATACGGAGGAAATCTGCCCAGTTATGCGTT
TTCAAATTTCATCAAACGTACACCAGGAGTGTCGGTGCAAGCGGGGCGGA
TTAAGGGGTTGAAAGAGATTGAGATTGCGGGGTCGAGGCAGTACGAGTAC
GGGGACCAGGTGTTGGGGAGCAGGGGGATAGATGAGCCCAAGCTGAACTT
GAAGCATGATAGAAGGGGGTTGTTGACAAAGAGCAGCTCCCAGGATGCTA
TTGACTCCCAGTTTGATATCACGCTGGGGCCACTTCCTGCATTGGACAAT
GGCGATTCGTTGGTTTTTGGAGTCGTGCTGGAGGGACAGGCAGCCCTAGA
CGCGATTGAAAATGTTCCGATCTACACTTATGAAAGCACAGGCGACCAAC
CCGAGGCCCTCAACGAGCTCTTCTCCCAACAGAAGAAGTTGTTTTTATCC
GTTGCCAAATCCTTGAACGATGAACGTGCAGTAAATCGGCAAGGATCATT
CTTGAAGCGGGTAGAGGTACTGGATGTGGGGGTGCTGTAG
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Synonyms
Publications