NO05G03810.1, NO05G03810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03810.1
Unique NameNO05G03810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1152
Alignment locationchr5:993568..994852 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:993568..994852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03810.1 vs.
Match: EWM28024.1 (atp-dependent clp protease atp-binding subunit [Nannochloropsis gaditana])

HSP 1 Score: 278.5 bits (711), Expect = 3.000e-71
Identity = 193/379 (50.92%), Postives = 232/379 (61.21%), Query Frame = 0
Query:    3 SCGRSASRLVI--LRKPTSTLVFSRAWISKNLSCDSSSSGMARPTIRSRSPTSAA---VAVQSHASEELVRPQRS-CFQPHPRHDDGGYTVAAATATSAPA-SEHVSGECFRCPKCSNYLAQAADATGSTDGTFFCSSCSIWVSSTGQRACPSSPSQHHYQDSVPQYTKIPTPPSSPSSTPPSGPPPTHPGGPLFPAAKPGTPSPGSIYPPGAPDDPFMTQHSSSNSSNIVGVPAPDTNVPPRVRDSPPPTFRLLTPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAVSRPSSTALQQQQQQQQAAAFSSLQQDLAGDIDPTLLATPDMHIPPPPLLCSSS--------SSSGISSILTSPP-----PLPSVGEGP 362
            SCGRSASR  I  LRK   TL  +R+W+S  L    +SS +   ++   SP+S      A       +L RP+ +   + + +  D    V     TS P+       + FRCP+C+NYLA A DA+G TDGT+FCS CSIWV STGQ +C  +       DSV Q  K+  PP      PPS PPP  P GP FPAAKPG PSPGS  PPG+PDDPFMTQH+S +++      APDT+VPP  +  PPPTFRLLTPKQI+QGLDEYVIGQ++VKIALAVGVHNHYKRLAV   +  A QQ+Q+Q   +  SSL Q+LAGDIDPTLLATP MHIPPPP    SS        SSS   SI +S P     P P    GP
Sbjct:    4 SCGRSASRQAIWRLRKVKLTLACNRSWLSSALPRSGNSSIIHASSVSDSSPSSEVQCQAAAPEQQQAQLTRPRHNHAHEGYQQQVDCKLIVRTPAVTSLPSLPPEQPRQSFRCPRCANYLATAIDASGGTDGTYFCSVCSIWVLSTGQGSCEKAFYLPSPADSVLQ-RKVNNPP------PPSSPPPA-PEGPFFPAAKPGLPSPGSNPPPGSPDDPFMTQHASHSNNFPPARAAPDTHVPPHGQ-GPPPTFRLLTPKQIYQGLDEYVIGQAAVKIALAVGVHNHYKRLAVQCRAPPARQQEQEQ---STQSSLSQELAGDIDPTLLATPGMHIPPPPPPAPSSVPPDPSHQSSSSNPSISSSSPLREFHPSPFRRRGP 370          
The following BLAST results are available for this feature:
BLAST of NO05G03810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28024.13.000e-7150.92atp-dependent clp protease atp-binding subunit [Na... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03810NO05G03810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03810.1NO05G03810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03810.1.cds1NO05G03810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03810.1.cds2NO05G03810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03810.1 ID=NO05G03810.1|Name=NO05G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1152bp
CACAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGT
CGTGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATAT
TGCGGAAGCCTACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAA
AATTTGTCCTGCGACAGCAGCAGCAGCGGCATGGCTAGGCCGACCATCAG
GAGTCGCTCCCCAACCTCTGCTGCTGTGGCTGTACAATCTCATGCTTCCG
AGGAGCTTGTCAGGCCACAGCGTTCCTGCTTTCAGCCCCATCCTCGTCAT
GACGATGGCGGGTATACCGTAGCCGCGGCGACTGCCACATCCGCACCGGC
ATCAGAGCATGTATCTGGGGAGTGCTTTCGATGTCCCAAGTGCTCTAATT
ATTTAGCTCAAGCCGCTGATGCCACGGGATCCACCGACGGGACTTTCTTC
TGTTCCTCCTGCTCCATCTGGGTGTCCTCCACCGGTCAACGCGCTTGTCC
TTCCTCGCCGTCACAGCACCACTACCAGGATTCGGTGCCGCAGTACACGA
AAATCCCCACCCCACCCTCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCT
CCTCCGACCCATCCCGGCGGACCCCTTTTTCCGGCCGCCAAGCCTGGCAC
GCCCTCCCCAGGCAGCATCTATCCTCCCGGCGCCCCAGACGACCCATTCA
TGACGCAGCATAGCAGCAGCAACAGCAGCAACATCGTCGGGGTACCTGCA
CCTGATACCAACGTGCCTCCTCGGGTGCGGGACTCACCCCCACCGACGTT
CCGTCTCTTGACACCGAAACAGATCTTTCAAGGTCTAGACGAGTACGTCA
TTGGACAATCCAGTGTCAAAATCGCCCTGGCCGTTGGAGTCCACAACCAT
TATAAGCGTCTCGCTGTCAGCCGCCCCTCCTCCACCGCCCTCCAGCAACA
GCAACAGCAACAGCAAGCAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAG
CTGGAGACATTGATCCCACTCTACTCGCCACCCCCGACATGCATATCCCC
CCCCCCCCCCTCCTGTGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCAT
CCTCACGTCGCCCCCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCT
AG
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protein sequence of NO05G03810.1

>NO05G03810.1-protein ID=NO05G03810.1-protein|Name=NO05G03810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=364bp
MLSCGRSASRLVILRKPTSTLVFSRAWISKNLSCDSSSSGMARPTIRSRS
PTSAAVAVQSHASEELVRPQRSCFQPHPRHDDGGYTVAAATATSAPASEH
VSGECFRCPKCSNYLAQAADATGSTDGTFFCSSCSIWVSSTGQRACPSSP
SQHHYQDSVPQYTKIPTPPSSPSSTPPSGPPPTHPGGPLFPAAKPGTPSP
GSIYPPGAPDDPFMTQHSSSNSSNIVGVPAPDTNVPPRVRDSPPPTFRLL
TPKQIFQGLDEYVIGQSSVKIALAVGVHNHYKRLAVSRPSSTALQQQQQQ
QQAAAFSSLQQDLAGDIDPTLLATPDMHIPPPPLLCSSSSSSGISSILTS
PPPLPSVGEGPGS*
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mRNA from alignment at chr5:993568..994852+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03810.1 ID=NO05G03810.1|Name=NO05G03810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1285bp|location=Sequence derived from alignment at chr5:993568..994852+ (Nannochloropsis oceanica)
CACAGACAATTCACAGGGCTTTGCTAAATCTGCCGCGAGTTTTATTTTGT CGTGGTCAGAATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATAT TGCGGAAGGTACGCATGCACTCATGGATCAAAGCTGGCATTTCCCCCCTC CCGTGCTTCTCCCACACCCTTCCTATCTCTTCTGTATGCCTATGTGAGCC TTATCAAACAATTTATTTACTCCCTCGATATACACTTACAGCCTACCAGC ACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAAATTTGTCCTGCGACAG CAGCAGCAGCGGCATGGCTAGGCCGACCATCAGGAGTCGCTCCCCAACCT CTGCTGCTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGTCAGGCCA CAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCGGGTATAC CGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCATGTATCTG GGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCAAGCCGCT GATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCTGCTCCAT CTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCGTCACAGC ACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCACCCCACCC TCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCCATCCCGG CGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCAGGCAGCA TCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCATAGCAGC AGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCAACGTGCC TCCTCGGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTGACACCGA AACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATCCAGTGTC AAAATCGCCCTGGCCGTTGGAGTCCACAACCATTATAAGCGTCTCGCTGT CAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAACAGCAAG CAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACATTGATCCC ACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCCTCCTGTG CAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCGCCCCCCC CTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAG
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Coding sequence (CDS) from alignment at chr5:993568..994852+

>NO05G03810.1 ID=NO05G03810.1|Name=NO05G03810.1|organism=Nannochloropsis oceanica|type=CDS|length=1092bp|location=Sequence derived from alignment at chr5:993568..994852+ (Nannochloropsis oceanica)
ATGCTAAGCTGTGGACGCTCCGCCTCGCGGCTGGTGATATTGCGGAAGCC
TACCAGCACCTTGGTCTTCAGTCGGGCATGGATCTCGAAAAATTTGTCCT
GCGACAGCAGCAGCAGCGGCATGGCTAGGCCGACCATCAGGAGTCGCTCC
CCAACCTCTGCTGCTGTGGCTGTACAATCTCATGCTTCCGAGGAGCTTGT
CAGGCCACAGCGTTCCTGCTTTCAGCCCCATCCTCGTCATGACGATGGCG
GGTATACCGTAGCCGCGGCGACTGCCACATCCGCACCGGCATCAGAGCAT
GTATCTGGGGAGTGCTTTCGATGTCCCAAGTGCTCTAATTATTTAGCTCA
AGCCGCTGATGCCACGGGATCCACCGACGGGACTTTCTTCTGTTCCTCCT
GCTCCATCTGGGTGTCCTCCACCGGTCAACGCGCTTGTCCTTCCTCGCCG
TCACAGCACCACTACCAGGATTCGGTGCCGCAGTACACGAAAATCCCCAC
CCCACCCTCCTCCCCTTCTTCCACTCCTCCCTCCGGCCCTCCTCCGACCC
ATCCCGGCGGACCCCTTTTTCCGGCCGCCAAGCCTGGCACGCCCTCCCCA
GGCAGCATCTATCCTCCCGGCGCCCCAGACGACCCATTCATGACGCAGCA
TAGCAGCAGCAACAGCAGCAACATCGTCGGGGTACCTGCACCTGATACCA
ACGTGCCTCCTCGGGTGCGGGACTCACCCCCACCGACGTTCCGTCTCTTG
ACACCGAAACAGATCTTTCAAGGTCTAGACGAGTACGTCATTGGACAATC
CAGTGTCAAAATCGCCCTGGCCGTTGGAGTCCACAACCATTATAAGCGTC
TCGCTGTCAGCCGCCCCTCCTCCACCGCCCTCCAGCAACAGCAACAGCAA
CAGCAAGCAGCCGCCTTCTCTTCCTTGCAGCAAGATCTAGCTGGAGACAT
TGATCCCACTCTACTCGCCACCCCCGACATGCATATCCCCCCCCCCCCCC
TCCTGTGCAGCAGCAGCAGCAGCAGCGGCATCAGCAGCATCCTCACGTCG
CCCCCCCCTCTCCCCTCCGTCGGCGAGGGCCCCGGCAGCTAG
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Synonyms
Publications