NO05G03790.1, NO05G03790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03790.1
Unique NameNO05G03790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1095
Alignment locationchr5:988697..989791 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:988697..989791 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03790.1 vs.
Match: EWM27982.1 (malate cytoplasmic isoform 2 [Nannochloropsis gaditana])

HSP 1 Score: 431.0 bits (1107), Expect = 3.600e-117
Identity = 225/282 (79.79%), Postives = 249/282 (88.30%), Query Frame = 0 
Query:    1 MIGHEEHNSAPTATKRVLITGGAGQIAYALLPHLISGRVFGCQTRLIVHLLDIPGTENALRGVQMEIEDAASPVVVGLVTTTDLRTAFTGVDYAILLGGFPRLPGMERKELLAKNVEIITTHAAALDDHASRDVKVVVVANPANTLALVAKKRASSLPAENFSCLTRLDHDRLRGMVAKKLTSLRISSSIPECSAAITATQVRNVAIWGNHSSTQVPSAGQAQVELGGKWVSIHEVLQEKDAAWLHGQLVTSVQQRGAEILAARKLSSALSAASAISKHVRD 283
            MIG EEH  APT  KRVLITGGAGQIAYALLPHLISGRVFG Q RL+VHLLDI GTENALRGVQMEIEDAASPVVVG+VTTTDLR AFT VDYAILLGGFPRLPGMERKELLAKNVEIIT HAAALD++ASR VKV+VVANPANTLAL+AKKRA+SLPAENFSCLTRLDHDRLRGM+AKK+ SL+    IP+   A+TA QVRNV IWGNHSSTQVPSA +AQV LGG+WV + +++ +++A WLH +LVT VQQRGAEILAARKLSSALSAA AI+ H +D
Sbjct:   68 MIGREEH--APTCVKRVLITGGAGQIAYALLPHLISGRVFGPQVRLMVHLLDIDGTENALRGVQMEIEDAASPVVVGVVTTTDLRVAFTDVDYAILLGGFPRLPGMERKELLAKNVEIITMHAAALDEYASRAVKVLVVANPANTLALIAKKRAASLPAENFSCLTRLDHDRLRGMIAKKIDSLK----IPDAHGAVTAMQVRNVIIWGNHSSTQVPSAAKAQVRLGGRWVPVLDIIGDEEAVWLHDELVTQVQQRGAEILAARKLSSALSAAQAIANHFKD 343
The following BLAST results are available for this feature:
BLAST of NO05G03790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27982.13.600e-11779.79malate cytoplasmic isoform 2 [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03790NO05G03790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03790.1NO05G03790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03790.1.cds1NO05G03790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03790.1 ID=NO05G03790.1|Name=NO05G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp
ATGATCGGACACGAGGAGCATAACTCGGCCCCCACGGCGACCAAGCGCGT
CTTGATTACAGGGGGGGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATC
TCATTAGCGGGCGCGTTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTG
CTCGACATCCCTGGGACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGAT
TGAGGACGCAGCCTCACCCGTCGTCGTGGGCTTGGTGACGACAACAGATT
TACGCACGGCCTTTACCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTC
CCTCGCTTGCCAGGAATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGA
GATCATAACCACGCACGCCGCCGCCCTGGACGATCACGCTAGCCGGGATG
TCAAGGTTGTGGTGGTGGCCAATCCAGCCAACACTCTAGCACTAGTAGCG
AAGAAGCGGGCCTCAAGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCG
CCTTGATCACGATCGCCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCC
TCCGCATCTCTTCTTCTATCCCGGAGTGCAGCGCCGCCATCACAGCCACC
CAGGTTCGCAATGTTGCTATTTGGGGCAATCACTCCAGCACGCAAGTCCC
GTCTGCCGGCCAAGCCCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCC
ACGAAGTGTTGCAAGAAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTC
ACGAGCGTACAGCAGCGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAG
CTCGGCCTTGAGTGCTGCCAGCGCGATTTCGAAACACGTTAGGGACTGGG
TGCATGGGACGCCTGAGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGT
AAGGACTGTACATATGACATCCCAGAGGACATATTCTTTTCGTTTCCTGT
GAAATGCAAGGGTGGGCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGG
AGGAGACGAGGCGCAGGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAG
AGGGATTTGGCGCTGTCCCTTGTAGGGGGGGCATCGCACTTGTAG
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protein sequence of NO05G03790.1

>NO05G03790.1-protein ID=NO05G03790.1-protein|Name=NO05G03790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MIGHEEHNSAPTATKRVLITGGAGQIAYALLPHLISGRVFGCQTRLIVHL
LDIPGTENALRGVQMEIEDAASPVVVGLVTTTDLRTAFTGVDYAILLGGF
PRLPGMERKELLAKNVEIITTHAAALDDHASRDVKVVVVANPANTLALVA
KKRASSLPAENFSCLTRLDHDRLRGMVAKKLTSLRISSSIPECSAAITAT
QVRNVAIWGNHSSTQVPSAGQAQVELGGKWVSIHEVLQEKDAAWLHGQLV
TSVQQRGAEILAARKLSSALSAASAISKHVRDWVHGTPEGEFVSMGVFVS
KDCTYDIPEDIFFSFPVKCKGGQWKVVEGLSLSEETRRRVLSTVTELVEE
RDLALSLVGGASHL*
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mRNA from alignment at chr5:988697..989791+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03790.1 ID=NO05G03790.1|Name=NO05G03790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1095bp|location=Sequence derived from alignment at chr5:988697..989791+ (Nannochloropsis oceanica)
ATGATCGGACACGAGGAGCATAACTCGGCCCCCACGGCGACCAAGCGCGT
CTTGATTACAGGGGGGGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATC
TCATTAGCGGGCGCGTTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTG
CTCGACATCCCTGGGACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGAT
TGAGGACGCAGCCTCACCCGTCGTCGTGGGCTTGGTGACGACAACAGATT
TACGCACGGCCTTTACCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTC
CCTCGCTTGCCAGGAATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGA
GATCATAACCACGCACGCCGCCGCCCTGGACGATCACGCTAGCCGGGATG
TCAAGGTTGTGGTGGTGGCCAATCCAGCCAACACTCTAGCACTAGTAGCG
AAGAAGCGGGCCTCAAGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCG
CCTTGATCACGATCGCCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCC
TCCGCATCTCTTCTTCTATCCCGGAGTGCAGCGCCGCCATCACAGCCACC
CAGGTTCGCAATGTTGCTATTTGGGGCAATCACTCCAGCACGCAAGTCCC
GTCTGCCGGCCAAGCCCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCC
ACGAAGTGTTGCAAGAAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTC
ACGAGCGTACAGCAGCGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAG
CTCGGCCTTGAGTGCTGCCAGCGCGATTTCGAAACACGTTAGGGACTGGG
TGCATGGGACGCCTGAGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGT
AAGGACTGTACATATGACATCCCAGAGGACATATTCTTTTCGTTTCCTGT
GAAATGCAAGGGTGGGCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGG
AGGAGACGAGGCGCAGGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAG
AGGGATTTGGCGCTGTCCCTTGTAGGGGGGGCATCGCACTTGTAG
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Coding sequence (CDS) from alignment at chr5:988697..989791+

>NO05G03790.1 ID=NO05G03790.1|Name=NO05G03790.1|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at chr5:988697..989791+ (Nannochloropsis oceanica)
ATGATCGGACACGAGGAGCATAACTCGGCCCCCACGGCGACCAAGCGCGT
CTTGATTACAGGGGGGGCAGGCCAGATTGCCTATGCGTTGCTCCCCCATC
TCATTAGCGGGCGCGTTTTCGGTTGCCAAACCCGCTTGATCGTGCACTTG
CTCGACATCCCTGGGACGGAGAACGCCCTGCGCGGCGTGCAAATGGAGAT
TGAGGACGCAGCCTCACCCGTCGTCGTGGGCTTGGTGACGACAACAGATT
TACGCACGGCCTTTACCGGGGTGGACTACGCGATTTTGTTGGGTGGGTTC
CCTCGCTTGCCAGGAATGGAACGCAAAGAACTCCTCGCCAAGAACGTGGA
GATCATAACCACGCACGCCGCCGCCCTGGACGATCACGCTAGCCGGGATG
TCAAGGTTGTGGTGGTGGCCAATCCAGCCAACACTCTAGCACTAGTAGCG
AAGAAGCGGGCCTCAAGCTTGCCTGCGGAGAACTTCTCGTGTTTGACTCG
CCTTGATCACGATCGCCTCCGTGGCATGGTGGCCAAGAAACTCACCTCCC
TCCGCATCTCTTCTTCTATCCCGGAGTGCAGCGCCGCCATCACAGCCACC
CAGGTTCGCAATGTTGCTATTTGGGGCAATCACTCCAGCACGCAAGTCCC
GTCTGCCGGCCAAGCCCAGGTGGAGCTTGGGGGAAAATGGGTTTCTATCC
ACGAAGTGTTGCAAGAAAAAGACGCGGCGTGGCTACATGGTCAGTTGGTC
ACGAGCGTACAGCAGCGGGGGGCGGAGATTTTGGCTGCCCGGAAACTGAG
CTCGGCCTTGAGTGCTGCCAGCGCGATTTCGAAACACGTTAGGGACTGGG
TGCATGGGACGCCTGAGGGGGAGTTTGTGAGTATGGGTGTGTTTGTGAGT
AAGGACTGTACATATGACATCCCAGAGGACATATTCTTTTCGTTTCCTGT
GAAATGCAAGGGTGGGCAGTGGAAGGTGGTGGAGGGGTTGAGCTTGTCGG
AGGAGACGAGGCGCAGGGTTTTGTCGACCGTTACCGAGTTGGTGGAAGAG
AGGGATTTGGCGCTGTCCCTTGTAGGGGGGGCATCGCACTTGTAG
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Synonyms
Publications