NO05G03750.1, NO05G03750.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03750.1
Unique NameNO05G03750.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length2183
Alignment locationchr5:979876..982336 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:979876..982336 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03750.1 vs.
Match: EWM27938.1 (set and zf-mynd domain-containing protein [Nannochloropsis gaditana])

HSP 1 Score: 606.3 bits (1562), Expect = 8.800e-170
Identity = 306/485 (63.09%), Postives = 369/485 (76.08%), Query Frame = 0 
Query:   32 TQTAFMDDENGNVVVAASQHHGRGLFGTRAFTPNEIILHERPLVALQSLENRQYFPTCGSCLHVIGTCRQHLVLLAEQGDRSQLVREDEARHLQEEATIFPAAVMASLVPCAMGCGELYCTPECREEHWNRGHRLLCVGHISESEAATHPLVLYKMHALRTNEIFLLVADVVALVLTRFDANGGDIAAALLPFSDFVQLPWWEVATNPDSSSDPVAFQDMLRSLVQEAADLLAKALLTRPGAPLAAYRGVVDGLFTSEFMASMIGMFEQNNVGIRRQSPLPSFLAEQLVPRCHEPSVLVYLQLLGKILEDWTDAAEEEDDEEDEEEAKNEEGAMQVDNAEDVGGSCRGGDDHVHDHQHKRIASSYSSAVSSLSPP-------ELLEACLTKSKTSDIFSALDGTALLSLICCMNHSCQPNCEVRWVGGLEPNSPLVAELVALESIPAGGELFQSYVTVENTTVEERRKKLKEYGFLCQCPLCANG 510
            T +  MD+   NV V  S++HGRGLF TR F P E+IL ERPLVA+QSL+NRQY P CG+C   IGTCRQHL+LLAE GDRS L+ E+E+R ++ EA  FP AV+A LVPC M CGE+YC+ +CREEHW+RGHRLLCVGHI E EA +HPLV YKMHALRTNEIFLLVADVVAL+LTRF++NGGD++AAL PF DFVQ PWW+VATNPD   D  AFQDMLR LV+ AADLL +ALLT PGAP A YRG V+ + + +F+A++IGMFEQNNVGIRR S L SFL + L+P C   S  VYLQLLG+ILEDW +   EE+DEE EE A ++   M V +A   G    G   H HDH H+ + +    +VSS  PP        L+EACL KS+TS+IFSA+DGTALLSLICCMNHSCQ NCEVRWVGG+   +PL+AELVA+E +P GGELFQSY+ V+ T+VE+RR  LKEYGF+CQC LC++G
Sbjct:    3 TTSTQMDNNKTNVSVLPSKYHGRGLFATRDFLPGEVILRERPLVAMQSLDNRQYVPACGACFCFIGTCRQHLMLLAEAGDRSALMEEEESRRMEAEAATFPGAVLAPLVPCTMRCGEMYCSQKCREEHWDRGHRLLCVGHIPEHEAGSHPLVQYKMHALRTNEIFLLVADVVALILTRFESNGGDLSAALSPFRDFVQRPWWDVATNPDPVRDTSAFQDMLRVLVKVAADLLRQALLTHPGAPCATYRGSVESIVSPDFVAAVIGMFEQNNVGIRRDSVLSSFLVDHLMPNCSIDSTQVYLQLLGRILEDWEEG--EEEDEEGEEGAPDDGDEMCVADAGISGADANG---HEHDH-HQHLGAVPPCSVSSRLPPASPSSARALVEACLAKSQTSEIFSAVDGTALLSLICCMNHSCQANCEVRWVGGV-GGAPLMAELVAMEHLPGGGELFQSYIRVQGTSVEDRRISLKEYGFICQCALCSSG 480
The following BLAST results are available for this feature:
BLAST of NO05G03750.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM27938.18.800e-17063.09set and zf-mynd domain-containing protein [Nannoch... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03750NO05G03750Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03750.1NO05G03750.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03750.1.cds1NO05G03750.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03750.1.cds2NO05G03750.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03750.1 ID=NO05G03750.1|Name=NO05G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2183bp
CTCCTCTTCCTCCTCCTCCTCTTCCTCCATCTCTTTGTCCTCTTCGTCCT
CCACTTCCGCCTCGCCTTCTGTGCTCTTGTCTTCTGCCGCTCGTGACTCC
ACACTTTCCGTTATGTGCTCCGCTGGATCCTCTGGAGGAAGCACGAGCTG
AGGCAAGAGCTCGCGATCTTCGCCGTCACCATCAGCATTGCCGGCGCCGA
GGCTACCAAGGGATGGAGTATGATTTAGATGCACCACGTTTGACGAGGCC
AACGGGGAGGATGCAGGGGTGAAGGGTGATGAGCCTAGCCCGGTCATCAA
GCGCTGCGAGACGTGCGGAGTGTTATTTGTACTGTTGGGGCGGCTGCCGA
GACGTGGCCTTGTCACAGGTGGGGGTGATGGACTGTGTGACGGCTGCATG
CTTCTTATTTGACCTCCTGCCCTTTGAGTCCCCTCGCCATTTCCGGCACC
ACAGCTTGGGGAGTCGCCCTTGTCCAACATCGGGGCGTCGTCCTAGCCTC
TGCGCGTATGTGTGCGGGTGGGGAGTTTTGGTTGGATGGGTATTCTGTAA
TAACGTATCACGGTGCATAAGAAATGCTGGCTGGCATCAACAACGGGTTG
CTGATAATTTGCATCATCCCACCGCACACTGAAACATCTCTCTCGCATTT
TTTTCTCTCTCACAATACACAAACAGCATTTATGGACGACGAAAATGGAA
ATGTGGTGGTGGCGGCTAGCCAGCACCATGGCCGTGGCTTGTTTGGAACG
CGAGCATTCACGCCTAACGAGATCATCCTGCATGAGCGGCCACTGGTCGC
CTTGCAAAGTTTGGAGAACCGGCAGTACTTTCCGACGTGCGGATCGTGTT
TGCACGTTATTGGCACATGCCGGCAGCATCTTGTGCTGCTGGCCGAGCAA
GGAGATCGCAGTCAGCTGGTTCGGGAGGACGAGGCAAGACACCTGCAGGA
AGAGGCCACAATCTTTCCGGCAGCTGTGATGGCGTCGCTTGTGCCGTGCG
CGATGGGCTGTGGTGAGTTGTATTGCACGCCTGAGTGCCGAGAAGAGCAT
TGGAATCGAGGGCATCGGTTGTTGTGCGTGGGACACATCTCGGAGAGCGA
GGCAGCTACGCACCCCCTGGTGCTGTACAAAATGCACGCTTTGCGAACCA
ATGAGATATTTTTGCTCGTTGCCGATGTCGTAGCATTGGTGCTCACGCGC
TTTGATGCTAATGGCGGAGATATAGCCGCGGCCTTGTTGCCGTTCAGTGA
TTTTGTGCAGCTCCCGTGGTGGGAAGTAGCGACAAACCCCGACTCGAGTA
GTGATCCCGTTGCATTTCAAGATATGCTTCGGAGCCTCGTCCAAGAAGCG
GCTGATCTGTTGGCGAAAGCGTTATTAACCAGACCTGGGGCGCCGCTTGC
GGCATATCGGGGTGTGGTAGATGGGCTGTTCACGTCTGAATTCATGGCGT
CGATGATTGGGATGTTTGAACAAAATAATGTAGGTATCCGTCGGCAGTCA
CCCTTGCCTTCTTTTTTGGCCGAGCAGCTTGTACCGCGTTGTCACGAGCC
CTCGGTGCTGGTTTATTTGCAGTTGCTGGGAAAGATTTTGGAGGATTGGA
CGGATGCAGCGGAGGAGGAGGATGATGAAGAGGATGAAGAGGAGGCCAAA
AACGAGGAGGGTGCCATGCAGGTGGACAATGCAGAGGATGTAGGGGGTTC
GTGTCGCGGCGGAGATGATCATGTCCATGACCATCAGCACAAAAGGATAG
CCTCATCTTATTCGTCTGCGGTGTCGTCATTGTCACCACCAGAGCTACTG
GAGGCCTGTTTGACAAAGAGCAAGACGTCAGATATCTTCTCTGCGCTGGA
CGGTACGGCATTGCTCTCCCTCATATGTTGCATGAATCATTCATGCCAAC
CCAATTGTGAAGTGCGGTGGGTAGGGGGTTTAGAGCCTAATTCGCCTTTG
GTCGCAGAGTTGGTGGCCCTGGAATCTATTCCAGCAGGAGGTGAGCTGTT
TCAAAGTTACGTAACAGTGGAAAATACGACGGTGGAGGAAAGGAGGAAGA
AATTAAAGGAATATGGCTTTTTGTGTCAGTGCCCGTTGTGTGCGAATGGG
GACAAGCACTAGGAATATTTGATGCGAACAGTTCTTTTGGCGGAAAGAAG
AAGACGTCAGAAAGTACGAGAACGCATGTGTGT
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protein sequence of NO05G03750.1

>NO05G03750.1-protein ID=NO05G03750.1-protein|Name=NO05G03750.1|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MLAGINNGLLIICIIPPHTETSLSHFFLSHNTQTAFMDDENGNVVVAASQ
HHGRGLFGTRAFTPNEIILHERPLVALQSLENRQYFPTCGSCLHVIGTCR
QHLVLLAEQGDRSQLVREDEARHLQEEATIFPAAVMASLVPCAMGCGELY
CTPECREEHWNRGHRLLCVGHISESEAATHPLVLYKMHALRTNEIFLLVA
DVVALVLTRFDANGGDIAAALLPFSDFVQLPWWEVATNPDSSSDPVAFQD
MLRSLVQEAADLLAKALLTRPGAPLAAYRGVVDGLFTSEFMASMIGMFEQ
NNVGIRRQSPLPSFLAEQLVPRCHEPSVLVYLQLLGKILEDWTDAAEEED
DEEDEEEAKNEEGAMQVDNAEDVGGSCRGGDDHVHDHQHKRIASSYSSAV
SSLSPPELLEACLTKSKTSDIFSALDGTALLSLICCMNHSCQPNCEVRWV
GGLEPNSPLVAELVALESIPAGGELFQSYVTVENTTVEERRKKLKEYGFL
CQCPLCANGDKH*
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mRNA from alignment at chr5:979876..982336+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03750.1 ID=NO05G03750.1|Name=NO05G03750.1|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at chr5:979876..982336+ (Nannochloropsis oceanica)
CTCCTCTTCCTCCTCCTCCTCTTCCTCCATCTCTTTGTCCTCTTCGTCCT
CCACTTCCGCCTCGCCTTCTGTGCTCTTGTCTTCTGCCGCTCGTGACTCC
ACACTTTCCGTTATGTGCTCCGCTGGATCCTCTGGAGGAAGCACGAGCTG
AGGCAAGAGCTCGCGATCTTCGCCGTCACCATCAGCATTGCCGGCGCCGA
GGCTACCAAGGGATGGAGTATGATTTAGATGCACCACGTTTGACGAGGCC
AACGGGGAGGATGCAGGGGTGAAGGGTGATGAGCCTAGCCCGGTCATCAA
GCGCTGCGAGACGTGCGGAGTGTTATTTGTACTGTTGGGGCGGCTGCCGA
GACGTGGCCTTGTCACAGGTGGGGGTGATGGACTGTGTGACGGCTGCATG
CTTCTTATTTGACCTCCTGCCCTTTGAGTCCCCTCGCCATTTCCGGCACC
ACAGCTTGGGGAGTCGCCCTTGTCCAACATCGGGGCGTCGTCCTAGCCTC
TGCGCGTATGTGTGCGGGTGGGGAGTTTTGGTTGGATGGGTATTCTGTAA
TAACGTATCACGGTGCATAAGAAATGCTGGCTGGCATCAACAACGGGTTG
CTGATAATTTGCATCATCCCACCGCACACTGAAACATCTCTCTCGCATTT
TTTTCTCTCTCACAATACACAAACAGCATTTATGGACGACGAAAATGGAA
ATGTGGTGGTGGCGGCTAGCCAGCACCATGGCCGTGGCTTGTTTGGAACG
CGAGCATTCACGCCTAACGAGGTAAGCGATGCGGGGTGGTGAAGGAGAGG
ATGTCGGAGGGTGAGGTTACGAACGCAGTTTGTCCTGTCCTTGCAAATAA
TTGTGGCTTTGATGCAGTATTACCAGAATCTTTGAGTAAGATGTGTGTCG
ATATCAAGGGATGTGCTTGAAAAGGCGCATTTTAACCAAGGAGAATGGGA
GCGGAGGAGGGAGGAAGGACGGGTAGAGCCCCGATTCAAGTAAAGGTGTC
TACTCACTTCCCACTGTTCGATCAACACCTTCACCCTCTTGGCCCCTAGA
TCATCCTGCATGAGCGGCCACTGGTCGCCTTGCAAAGTTTGGAGAACCGG
CAGTACTTTCCGACGTGCGGATCGTGTTTGCACGTTATTGGCACATGCCG
GCAGCATCTTGTGCTGCTGGCCGAGCAAGGAGATCGCAGTCAGCTGGTTC
GGGAGGACGAGGCAAGACACCTGCAGGAAGAGGCCACAATCTTTCCGGCA
GCTGTGATGGCGTCGCTTGTGCCGTGCGCGATGGGCTGTGGTGAGTTGTA
TTGCACGCCTGAGTGCCGAGAAGAGCATTGGAATCGAGGGCATCGGTTGT
TGTGCGTGGGACACATCTCGGAGAGCGAGGCAGCTACGCACCCCCTGGTG
CTGTACAAAATGCACGCTTTGCGAACCAATGAGATATTTTTGCTCGTTGC
CGATGTCGTAGCATTGGTGCTCACGCGCTTTGATGCTAATGGCGGAGATA
TAGCCGCGGCCTTGTTGCCGTTCAGTGATTTTGTGCAGCTCCCGTGGTGG
GAAGTAGCGACAAACCCCGACTCGAGTAGTGATCCCGTTGCATTTCAAGA
TATGCTTCGGAGCCTCGTCCAAGAAGCGGCTGATCTGTTGGCGAAAGCGT
TATTAACCAGACCTGGGGCGCCGCTTGCGGCATATCGGGGTGTGGTAGAT
GGGCTGTTCACGTCTGAATTCATGGCGTCGATGATTGGGATGTTTGAACA
AAATAATGTAGGTATCCGTCGGCAGTCACCCTTGCCTTCTTTTTTGGCCG
AGCAGCTTGTACCGCGTTGTCACGAGCCCTCGGTGCTGGTTTATTTGCAG
TTGCTGGGAAAGATTTTGGAGGATTGGACGGATGCAGCGGAGGAGGAGGA
TGATGAAGAGGATGAAGAGGAGGCCAAAAACGAGGAGGGTGCCATGCAGG
TGGACAATGCAGAGGATGTAGGGGGTTCGTGTCGCGGCGGAGATGATCAT
GTCCATGACCATCAGCACAAAAGGATAGCCTCATCTTATTCGTCTGCGGT
GTCGTCATTGTCACCACCAGAGCTACTGGAGGCCTGTTTGACAAAGAGCA
AGACGTCAGATATCTTCTCTGCGCTGGACGGTACGGCATTGCTCTCCCTC
ATATGTTGCATGAATCATTCATGCCAACCCAATTGTGAAGTGCGGTGGGT
AGGGGGTTTAGAGCCTAATTCGCCTTTGGTCGCAGAGTTGGTGGCCCTGG
AATCTATTCCAGCAGGAGGTGAGCTGTTTCAAAGTTACGTAACAGTGGAA
AATACGACGGTGGAGGAAAGGAGGAAGAAATTAAAGGAATATGGCTTTTT
GTGTCAGTGCCCGTTGTGTGCGAATGGGGACAAGCACTAGGAATATTTGA
TGCGAACAGTTCTTTTGGCGGAAAGAAGAAGACGTCAGAAAGTACGAGAA
CGCATGTGTGT
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Coding sequence (CDS) from alignment at chr5:979876..982336+

>NO05G03750.1 ID=NO05G03750.1|Name=NO05G03750.1|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at chr5:979876..982336+ (Nannochloropsis oceanica)
ATGCTGGCTGGCATCAACAACGGGTTGCTGATAATTTGCATCATCCCACC
GCACACTGAAACATCTCTCTCGCATTTTTTTCTCTCTCACAATACACAAA
CAGCATTTATGGACGACGAAAATGGAAATGTGGTGGTGGCGGCTAGCCAG
CACCATGGCCGTGGCTTGTTTGGAACGCGAGCATTCACGCCTAACGAGAT
CATCCTGCATGAGCGGCCACTGGTCGCCTTGCAAAGTTTGGAGAACCGGC
AGTACTTTCCGACGTGCGGATCGTGTTTGCACGTTATTGGCACATGCCGG
CAGCATCTTGTGCTGCTGGCCGAGCAAGGAGATCGCAGTCAGCTGGTTCG
GGAGGACGAGGCAAGACACCTGCAGGAAGAGGCCACAATCTTTCCGGCAG
CTGTGATGGCGTCGCTTGTGCCGTGCGCGATGGGCTGTGGTGAGTTGTAT
TGCACGCCTGAGTGCCGAGAAGAGCATTGGAATCGAGGGCATCGGTTGTT
GTGCGTGGGACACATCTCGGAGAGCGAGGCAGCTACGCACCCCCTGGTGC
TGTACAAAATGCACGCTTTGCGAACCAATGAGATATTTTTGCTCGTTGCC
GATGTCGTAGCATTGGTGCTCACGCGCTTTGATGCTAATGGCGGAGATAT
AGCCGCGGCCTTGTTGCCGTTCAGTGATTTTGTGCAGCTCCCGTGGTGGG
AAGTAGCGACAAACCCCGACTCGAGTAGTGATCCCGTTGCATTTCAAGAT
ATGCTTCGGAGCCTCGTCCAAGAAGCGGCTGATCTGTTGGCGAAAGCGTT
ATTAACCAGACCTGGGGCGCCGCTTGCGGCATATCGGGGTGTGGTAGATG
GGCTGTTCACGTCTGAATTCATGGCGTCGATGATTGGGATGTTTGAACAA
AATAATGTAGGTATCCGTCGGCAGTCACCCTTGCCTTCTTTTTTGGCCGA
GCAGCTTGTACCGCGTTGTCACGAGCCCTCGGTGCTGGTTTATTTGCAGT
TGCTGGGAAAGATTTTGGAGGATTGGACGGATGCAGCGGAGGAGGAGGAT
GATGAAGAGGATGAAGAGGAGGCCAAAAACGAGGAGGGTGCCATGCAGGT
GGACAATGCAGAGGATGTAGGGGGTTCGTGTCGCGGCGGAGATGATCATG
TCCATGACCATCAGCACAAAAGGATAGCCTCATCTTATTCGTCTGCGGTG
TCGTCATTGTCACCACCAGAGCTACTGGAGGCCTGTTTGACAAAGAGCAA
GACGTCAGATATCTTCTCTGCGCTGGACGGTACGGCATTGCTCTCCCTCA
TATGTTGCATGAATCATTCATGCCAACCCAATTGTGAAGTGCGGTGGGTA
GGGGGTTTAGAGCCTAATTCGCCTTTGGTCGCAGAGTTGGTGGCCCTGGA
ATCTATTCCAGCAGGAGGTGAGCTGTTTCAAAGTTACGTAACAGTGGAAA
ATACGACGGTGGAGGAAAGGAGGAAGAAATTAAAGGAATATGGCTTTTTG
TGTCAGTGCCCGTTGTGTGCGAATGGGGACAAGCACTAG
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Synonyms
Publications