NO05G03720.1, NO05G03720.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03720.1
Unique NameNO05G03720.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1806
Alignment locationchr5:973455..975260 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:973455..975260 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03720.1 vs.
Match: EWM28028.1 (hypothetical protein Naga_100008g15 [Nannochloropsis gaditana])

HSP 1 Score: 855.1 bits (2208), Expect = 1.300e-244
Identity = 441/584 (75.51%), Postives = 493/584 (84.42%), Query Frame = 0
Query:    1 MRMASCVFVVVAVAVLLPSA-SQAFLVRPISSTAPSAPTTTTRRHAATVDPPSNPAAAVDKLQLTFSADEEEAVFSFERRLKDSGVVAEGLEHALFWPVDDAAPCRGLKTQVDAPPNKALIELPKGQAICLDEGEGTPFPQWVPAKQWKKMPWYAQLGLKLVYERKTSTSALKTGYAQLLPPPKALPTPFHWSDLDLNALRSVYPALANKVDRQRTVWAGLYDTLGKTRAVREDMDEDTFVWAMESVLSRAFKGTFGTGFNSLAPSLLLMGIFAGIYYIDQETIQLVSYALEEYPYLAAIPAGLTLLPSVLEFFKSKGTYVLAPMIDSLNHRSTVPTDLDYDSIRQRFRLSLGVGYRAGDQVFMSYGSKTNDDLLLHYGFVEVDAPSDVFEFGDLLTWLVEKRAGIVNDDRVQTLFSKGLQDNVRGCKVGRKGKIVDEKALEGLRILLASDDELRAENAITESIIQTPMFLTMDEFQDSVFKRELQSPTELAVYEALLEACLEQRQLLSLTREEEEEMRVAKANRTQVGGGNENTEKAPRLLTLMFRLEKLRLLDEAITRFRKLTGNEKQLLLPSPTSSNSSSV 584
            MR+       +A+ VL  S  +Q FLV+    ++ S P T  RR A TV+P S+ +  + + Q  F+ DE+EAVFSFERRLKDSG+ AEGLEHALFWP  D AP RGLKT ++ P  K LI+LP+ QAICLDEGE TPFPQWVP KQWKKMPWYAQLGLKLVYERKTSTSALK GY QLLPPP+ +PTP HW + DLNALR VYP LA KVDRQR +WAGLYD LGKTRAVREDMDE TFVWAMESVLSRAFKGTFGTGFNSLAPSLLL+ +FAGIYY+DQETIQL+SYALEEYPYLA IP  L LLPS+LEFF+SK TYVLAPMIDSLNHRSTVPTDLDYDS+RQRFRLSLG  ++AG QVFMSYG K+NDDLL HYGFVEVDA +DVFEFGDLL WL+E RAGIVNDDRVQTLFSKGLQ+NVR C++GR+G++VDEKALEGLRILLASDDELRAENAITESIIQTPMFLT+DEFQDSVF +ELQSPTELAVYEA+LEA LEQRQ LSLT+EEEEE+  A A+R ++G   EN E+APRLLTL FR+EKLRLLDEAI RFRKLTG EKQLLLP P S+ S SV
Sbjct:    1 MRVTCPTLPTIAMMVLSASRMTQGFLVKSGRLSSSSLPVT--RRFAVTVEPKSSASPDLYQCQAGFTEDEKEAVFSFERRLKDSGIDAEGLEHALFWPQGDTAPSRGLKTNLNIPLGKVLIKLPRSQAICLDEGESTPFPQWVPQKQWKKMPWYAQLGLKLVYERKTSTSALKAGYTQLLPPPEGIPTPLHWPEEDLNALRGVYPVLAGKVDRQRQLWAGLYDALGKTRAVREDMDETTFVWAMESVLSRAFKGTFGTGFNSLAPSLLLVALFAGIYYLDQETIQLLSYALEEYPYLAVIPGALVLLPSLLEFFRSKATYVLAPMIDSLNHRSTVPTDLDYDSVRQRFRLSLGEDFKAGQQVFMSYGDKSNDDLLFHYGFVEVDAAADVFEFGDLLDWLLENRAGIVNDDRVQTLFSKGLQENVRSCRLGRRGRLVDEKALEGLRILLASDDELRAENAITESIIQTPMFLTLDEFQDSVFSKELQSPTELAVYEAMLEATLEQRQRLSLTQEEEEELGKAAASRERLGAETENAERAPRLLTLAFRVEKLRLLDEAIARFRKLTGAEKQLLLP-PKSAASKSV 581          
The following BLAST results are available for this feature:
BLAST of NO05G03720.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28028.11.300e-24475.51hypothetical protein Naga_100008g15 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03720NO05G03720Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03720.1NO05G03720.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03720.1.cds1NO05G03720.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp
ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT
GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC
CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA
CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC
TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG
GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC
GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA
AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG
AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG
CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC
CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG
CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA
AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG
GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA
TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG
TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT
GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC
AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA
GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG
CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG
TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT
CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG
TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG
CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG
AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA
GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA
TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT
GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC
AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC
TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT
CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT
GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA
CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA
CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA
GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA
GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG
GCATAG
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protein sequence of NO05G03720.1

>NO05G03720.1-protein ID=NO05G03720.1-protein|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp
MRMASCVFVVVAVAVLLPSASQAFLVRPISSTAPSAPTTTTRRHAATVDP
PSNPAAAVDKLQLTFSADEEEAVFSFERRLKDSGVVAEGLEHALFWPVDD
AAPCRGLKTQVDAPPNKALIELPKGQAICLDEGEGTPFPQWVPAKQWKKM
PWYAQLGLKLVYERKTSTSALKTGYAQLLPPPKALPTPFHWSDLDLNALR
SVYPALANKVDRQRTVWAGLYDTLGKTRAVREDMDEDTFVWAMESVLSRA
FKGTFGTGFNSLAPSLLLMGIFAGIYYIDQETIQLVSYALEEYPYLAAIP
AGLTLLPSVLEFFKSKGTYVLAPMIDSLNHRSTVPTDLDYDSIRQRFRLS
LGVGYRAGDQVFMSYGSKTNDDLLLHYGFVEVDAPSDVFEFGDLLTWLVE
KRAGIVNDDRVQTLFSKGLQDNVRGCKVGRKGKIVDEKALEGLRILLASD
DELRAENAITESIIQTPMFLTMDEFQDSVFKRELQSPTELAVYEALLEAC
LEQRQLLSLTREEEEEMRVAKANRTQVGGGNENTEKAPRLLTLMFRLEKL
RLLDEAITRFRKLTGNEKQLLLPSPTSSNSSSVSGDTAASAVRAVAASKE
A*
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mRNA from alignment at chr5:973455..975260+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at chr5:973455..975260+ (Nannochloropsis oceanica)
ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG GCATAG
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Coding sequence (CDS) from alignment at chr5:973455..975260+

>NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr5:973455..975260+ (Nannochloropsis oceanica)
ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT
GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC
CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA
CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC
TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG
GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC
GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA
AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG
AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG
CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC
CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG
CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA
AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG
GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA
TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG
TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT
GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC
AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA
GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG
CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG
TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT
CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG
TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG
CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG
AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA
GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA
TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT
GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC
AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC
TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT
CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT
GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA
CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA
CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA
GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA
GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG
GCATAG
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Synonyms
Publications