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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:973455..975260 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03720.1 vs.
Match: EWM28028.1 (hypothetical protein Naga_100008g15 [Nannochloropsis gaditana]) HSP 1 Score: 855.1 bits (2208), Expect = 1.300e-244 Identity = 441/584 (75.51%), Postives = 493/584 (84.42%), Query Frame = 0
Query: 1 MRMASCVFVVVAVAVLLPSA-SQAFLVRPISSTAPSAPTTTTRRHAATVDPPSNPAAAVDKLQLTFSADEEEAVFSFERRLKDSGVVAEGLEHALFWPVDDAAPCRGLKTQVDAPPNKALIELPKGQAICLDEGEGTPFPQWVPAKQWKKMPWYAQLGLKLVYERKTSTSALKTGYAQLLPPPKALPTPFHWSDLDLNALRSVYPALANKVDRQRTVWAGLYDTLGKTRAVREDMDEDTFVWAMESVLSRAFKGTFGTGFNSLAPSLLLMGIFAGIYYIDQETIQLVSYALEEYPYLAAIPAGLTLLPSVLEFFKSKGTYVLAPMIDSLNHRSTVPTDLDYDSIRQRFRLSLGVGYRAGDQVFMSYGSKTNDDLLLHYGFVEVDAPSDVFEFGDLLTWLVEKRAGIVNDDRVQTLFSKGLQDNVRGCKVGRKGKIVDEKALEGLRILLASDDELRAENAITESIIQTPMFLTMDEFQDSVFKRELQSPTELAVYEALLEACLEQRQLLSLTREEEEEMRVAKANRTQVGGGNENTEKAPRLLTLMFRLEKLRLLDEAITRFRKLTGNEKQLLLPSPTSSNSSSV 584
MR+ +A+ VL S +Q FLV+ ++ S P T RR A TV+P S+ + + + Q F+ DE+EAVFSFERRLKDSG+ AEGLEHALFWP D AP RGLKT ++ P K LI+LP+ QAICLDEGE TPFPQWVP KQWKKMPWYAQLGLKLVYERKTSTSALK GY QLLPPP+ +PTP HW + DLNALR VYP LA KVDRQR +WAGLYD LGKTRAVREDMDE TFVWAMESVLSRAFKGTFGTGFNSLAPSLLL+ +FAGIYY+DQETIQL+SYALEEYPYLA IP L LLPS+LEFF+SK TYVLAPMIDSLNHRSTVPTDLDYDS+RQRFRLSLG ++AG QVFMSYG K+NDDLL HYGFVEVDA +DVFEFGDLL WL+E RAGIVNDDRVQTLFSKGLQ+NVR C++GR+G++VDEKALEGLRILLASDDELRAENAITESIIQTPMFLT+DEFQDSVF +ELQSPTELAVYEA+LEA LEQRQ LSLT+EEEEE+ A A+R ++G EN E+APRLLTL FR+EKLRLLDEAI RFRKLTG EKQLLLP P S+ S SV
Sbjct: 1 MRVTCPTLPTIAMMVLSASRMTQGFLVKSGRLSSSSLPVT--RRFAVTVEPKSSASPDLYQCQAGFTEDEKEAVFSFERRLKDSGIDAEGLEHALFWPQGDTAPSRGLKTNLNIPLGKVLIKLPRSQAICLDEGESTPFPQWVPQKQWKKMPWYAQLGLKLVYERKTSTSALKAGYTQLLPPPEGIPTPLHWPEEDLNALRGVYPVLAGKVDRQRQLWAGLYDALGKTRAVREDMDETTFVWAMESVLSRAFKGTFGTGFNSLAPSLLLVALFAGIYYLDQETIQLLSYALEEYPYLAVIPGALVLLPSLLEFFRSKATYVLAPMIDSLNHRSTVPTDLDYDSVRQRFRLSLGEDFKAGQQVFMSYGDKSNDDLLFHYGFVEVDAAADVFEFGDLLDWLLENRAGIVNDDRVQTLFSKGLQENVRSCRLGRRGRLVDEKALEGLRILLASDDELRAENAITESIIQTPMFLTLDEFQDSVFSKELQSPTELAVYEAMLEATLEQRQRLSLTQEEEEELGKAAASRERLGAETENAERAPRLLTLAFRVEKLRLLDEAIARFRKLTGAEKQLLLP-PKSAASKSV 581
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG GCATAG back to topprotein sequence of NO05G03720.1 >NO05G03720.1-protein ID=NO05G03720.1-protein|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=polypeptide|length=602bp MRMASCVFVVVAVAVLLPSASQAFLVRPISSTAPSAPTTTTRRHAATVDP PSNPAAAVDKLQLTFSADEEEAVFSFERRLKDSGVVAEGLEHALFWPVDD AAPCRGLKTQVDAPPNKALIELPKGQAICLDEGEGTPFPQWVPAKQWKKM PWYAQLGLKLVYERKTSTSALKTGYAQLLPPPKALPTPFHWSDLDLNALR SVYPALANKVDRQRTVWAGLYDTLGKTRAVREDMDEDTFVWAMESVLSRA FKGTFGTGFNSLAPSLLLMGIFAGIYYIDQETIQLVSYALEEYPYLAAIP AGLTLLPSVLEFFKSKGTYVLAPMIDSLNHRSTVPTDLDYDSIRQRFRLS LGVGYRAGDQVFMSYGSKTNDDLLLHYGFVEVDAPSDVFEFGDLLTWLVE KRAGIVNDDRVQTLFSKGLQDNVRGCKVGRKGKIVDEKALEGLRILLASD DELRAENAITESIIQTPMFLTMDEFQDSVFKRELQSPTELAVYEALLEAC LEQRQLLSLTREEEEEMRVAKANRTQVGGGNENTEKAPRLLTLMFRLEKL RLLDEAITRFRKLTGNEKQLLLPSPTSSNSSSVSGDTAASAVRAVAASKE A* back to topmRNA from alignment at chr5:973455..975260+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=mRNA|length=1806bp|location=Sequence derived from alignment at chr5:973455..975260+ (Nannochloropsis oceanica) ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT
GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC
CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA
CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC
TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG
GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC
GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA
AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG
AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG
CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC
CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG
CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA
AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG
GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA
TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG
TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT
GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC
AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA
GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG
CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG
TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT
CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG
TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG
CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG
AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA
GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA
TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT
GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC
AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC
TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT
CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT
GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA
CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA
CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA
GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA
GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG
GCATAG back to topCoding sequence (CDS) from alignment at chr5:973455..975260+ >NO05G03720.1 ID=NO05G03720.1|Name=NO05G03720.1|organism=Nannochloropsis oceanica|type=CDS|length=1806bp|location=Sequence derived from alignment at chr5:973455..975260+ (Nannochloropsis oceanica) ATGCGGATGGCTTCCTGTGTATTCGTGGTAGTAGCTGTGGCGGTTCTGCT GCCCTCGGCGTCCCAAGCCTTCCTTGTCCGCCCAATCTCCTCCACTGCAC CATCAGCCCCTACTACAACTACAAGGCGGCACGCCGCAACGGTGGACCCA CCCTCAAACCCAGCCGCGGCCGTGGATAAACTCCAATTGACATTTTCGGC TGATGAGGAAGAGGCGGTGTTTTCCTTTGAGCGTCGTCTCAAGGACTCGG GCGTGGTCGCGGAGGGGTTGGAGCACGCCCTCTTCTGGCCTGTGGATGAC GCAGCCCCATGCCGCGGTCTCAAGACTCAAGTCGACGCCCCCCCAAATAA AGCGCTGATTGAGCTACCAAAAGGCCAAGCTATCTGTCTAGATGAAGGAG AGGGCACGCCATTTCCTCAATGGGTCCCGGCCAAGCAATGGAAAAAAATG CCTTGGTACGCTCAACTCGGGCTCAAGCTTGTGTACGAACGCAAGACCTC CACCAGTGCCCTCAAGACTGGCTACGCACAGCTTTTGCCACCCCCAAAGG CCTTGCCAACCCCCTTTCATTGGTCTGACTTGGATCTCAATGCGCTCCGA AGTGTTTACCCCGCACTTGCCAACAAAGTGGACAGACAACGAACAGTTTG GGCCGGGCTTTATGACACCCTGGGGAAGACCCGGGCGGTCCGCGAGGATA TGGACGAAGACACCTTTGTGTGGGCCATGGAAAGTGTGCTTTCTCGCGCG TTCAAGGGGACGTTCGGTACGGGTTTTAATAGCTTAGCGCCTTCCTTATT GTTGATGGGCATCTTTGCCGGGATTTACTATATTGACCAAGAAACGATTC AACTCGTCAGCTACGCCTTGGAAGAATATCCGTATCTCGCAGCGATTCCA GCGGGGTTGACGCTGTTGCCTTCTGTATTGGAGTTCTTCAAGTCTAAAGG CACGTATGTACTGGCGCCCATGATAGATAGTTTGAATCATCGGTCAACTG TCCCCACGGACTTGGACTACGATTCGATTCGGCAGCGGTTCAGGTTGAGT CTGGGGGTGGGGTATCGGGCGGGGGATCAGGTGTTCATGTCATACGGGAG TAAGACTAATGATGACTTACTGTTGCATTATGGCTTTGTTGAAGTGGACG CCCCAAGCGACGTGTTTGAGTTCGGGGATCTGTTGACTTGGTTGGTGGAG AAGAGGGCGGGGATCGTGAACGATGACAGGGTTCAGACATTGTTTTCAAA GGGACTACAGGATAATGTGCGGGGGTGTAAGGTAGGCAGAAAAGGGAAGA TTGTGGATGAGAAGGCCTTGGAGGGGTTGCGGATACTACTGGCTTCGGAT GATGAATTAAGGGCAGAAAATGCGATTACGGAGAGTATCATTCAAACGCC AATGTTCCTGACCATGGACGAATTTCAGGACTCTGTATTTAAAAGGGAAC TGCAAAGTCCGACGGAGTTGGCGGTGTATGAAGCGTTATTGGAGGCCTGT CTGGAGCAGCGGCAGTTGTTGTCGTTGACAAGGGAGGAGGAGGAGGAGAT GAGAGTGGCGAAGGCGAATCGAACCCAGGTTGGGGGAGGGAACGAAAATA CGGAGAAAGCGCCTCGATTGCTGACACTGATGTTTAGATTGGAGAAGTTA CGGCTGTTGGATGAGGCGATAACGAGGTTTCGAAAGTTAACGGGGAATGA GAAACAGCTGCTGTTACCTTCGCCCACGAGTAGCAACAGTAGTAGTGTGA GTGGTGATACTGCAGCATCAGCAGTAAGAGCAGTGGCAGCATCGAAAGAG GCATAG back to top
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