NO05G03700.1, NO05G03700.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03700.1
Unique NameNO05G03700.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length999
Alignment locationchr5:968615..969613 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:968615..969613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03700.1 vs.
Match: EWM28040.1 (nitrilase 1-like protein [Nannochloropsis gaditana])

HSP 1 Score: 434.1 bits (1115), Expect = 3.900e-118
Identity = 208/311 (66.88%), Postives = 256/311 (82.32%), Query Frame = 0 
Query:    6 LASAAAATAASSSRLPMNPLVAVGQLTSTEDRDQNIRRCRDLAVRAKKAGAALLCLPECFSLVGSSWRETVAAGQPIEGPMVSEMRTLAKEQGLWLSLGGFPEKMPSPQNSKIEDSGDENERVYNTHIVLDDKGDIKALYRKIHLFDVNFPNGPVLQESKYTAPGAEVVVIDSPIGRLGLSTCYDLRFPELYQALVKRGAEVLLVPSAFTVLTGQAHWEILLRARAIETQCYVLASAQAGQHNEKRASYGHSLIVDPWGKVMEDAGGDASPALVMAEIDLKRLHEIRAKIPVQLHRRRDVFFGVSGVGHSK 317
            +A+A AA  ++S R+   PLVAV QLT+T+DR +N+R CRDLA +AK AGA LLCLPECFS +G SWRETVA GQ +EG ++SEMR LAKE  LWLSLGGFPE + S +          + +VYNTH++LDD G I+A YRKIHLFDV+ PNGPVLQES+YT PG  VVV+DSP+GRLGLSTCYDLRFPE+Y+AL+++GAE+LLVPSAFTV TG+AHWE+LLRARAIETQCYV+A+AQ GQHNEKRASYGHS++VDPWG+V+ DAGG+ SP L +AEIDL +LHEIRAK+P++ HRRRD+F+G    G S+
Sbjct:    4 VAAALAAPTSTSKRMSPTPLVAVAQLTATDDRKENLRVCRDLAFQAKAAGAGLLCLPECFSFLGRSWRETVAVGQALEGSVISEMRALAKELKLWLSLGGFPEAVSSAERG--------DAKVYNTHVILDDDGCIQARYRKIHLFDVDVPNGPVLQESRYTLPGDRVVVVDSPVGRLGLSTCYDLRFPEMYEALLRQGAEILLVPSAFTVPTGKAHWEVLLRARAIETQCYVVAAAQVGQHNEKRASYGHSMVVDPWGRVLSDAGGETSPILSVAEIDLTKLHEIRAKMPIKSHRRRDLFYGRFHGGESR 306
The following BLAST results are available for this feature:
BLAST of NO05G03700.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28040.13.900e-11866.88nitrilase 1-like protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03700NO05G03700Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03700.1NO05G03700.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03700.1.cds1NO05G03700.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03700.1 ID=NO05G03700.1|Name=NO05G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp
ATGCGCTTTGCCAGTCTTGCATCTGCCGCCGCCGCAACCGCTGCCAGCAG
CAGCCGCCTGCCCATGAACCCTCTCGTCGCAGTGGGGCAACTCACCTCCA
CGGAAGACCGAGACCAGAACATCCGACGCTGTAGAGACCTAGCTGTTCGC
GCAAAAAAAGCGGGGGCCGCCTTGCTCTGCTTGCCGGAATGCTTCTCACT
TGTAGGCTCCTCCTGGCGAGAAACTGTCGCGGCGGGACAGCCCATTGAAG
GACCCATGGTGAGTGAAATGCGTACTTTGGCCAAGGAGCAAGGTCTGTGG
CTTTCTCTCGGAGGGTTTCCTGAGAAGATGCCATCACCTCAGAATTCGAA
AATAGAAGACAGCGGGGATGAGAACGAGAGAGTGTATAACACCCACATTG
TCCTCGACGACAAAGGAGATATCAAAGCACTCTACCGTAAAATCCACCTG
TTTGACGTCAACTTTCCAAATGGCCCAGTGTTGCAAGAAAGCAAATATAC
TGCTCCCGGCGCCGAGGTGGTAGTCATTGATTCCCCCATCGGCCGACTGG
GTCTCTCCACCTGCTACGACCTCCGTTTTCCCGAATTGTACCAGGCATTG
GTCAAAAGAGGCGCAGAGGTCCTTCTTGTCCCATCAGCATTTACAGTCTT
GACAGGACAAGCCCATTGGGAGATCTTACTTCGGGCCAGAGCTATTGAAA
CGCAATGCTACGTCTTGGCGTCCGCACAAGCAGGACAGCACAACGAAAAA
CGGGCGTCGTACGGGCACTCTTTAATAGTAGACCCGTGGGGGAAAGTGAT
GGAAGATGCGGGGGGCGACGCATCACCGGCACTGGTGATGGCGGAGATTG
ATTTAAAGAGACTACATGAGATAAGGGCAAAGATTCCCGTACAGTTGCAT
CGACGGCGGGATGTGTTTTTCGGGGTAAGCGGTGTTGGTCATAGTAAAGG
AGGAGGAGGAGAAGGAGGAGGAGGAATTGGGACTGCGCCATCGGTGTGA
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protein sequence of NO05G03700.1

>NO05G03700.1-protein ID=NO05G03700.1-protein|Name=NO05G03700.1|organism=Nannochloropsis oceanica|type=polypeptide|length=333bp
MRFASLASAAAATAASSSRLPMNPLVAVGQLTSTEDRDQNIRRCRDLAVR
AKKAGAALLCLPECFSLVGSSWRETVAAGQPIEGPMVSEMRTLAKEQGLW
LSLGGFPEKMPSPQNSKIEDSGDENERVYNTHIVLDDKGDIKALYRKIHL
FDVNFPNGPVLQESKYTAPGAEVVVIDSPIGRLGLSTCYDLRFPELYQAL
VKRGAEVLLVPSAFTVLTGQAHWEILLRARAIETQCYVLASAQAGQHNEK
RASYGHSLIVDPWGKVMEDAGGDASPALVMAEIDLKRLHEIRAKIPVQLH
RRRDVFFGVSGVGHSKGGGGEGGGGIGTAPSV*
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mRNA from alignment at chr5:968615..969613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03700.1 ID=NO05G03700.1|Name=NO05G03700.1|organism=Nannochloropsis oceanica|type=mRNA|length=999bp|location=Sequence derived from alignment at chr5:968615..969613+ (Nannochloropsis oceanica)
ATGCGCTTTGCCAGTCTTGCATCTGCCGCCGCCGCAACCGCTGCCAGCAG
CAGCCGCCTGCCCATGAACCCTCTCGTCGCAGTGGGGCAACTCACCTCCA
CGGAAGACCGAGACCAGAACATCCGACGCTGTAGAGACCTAGCTGTTCGC
GCAAAAAAAGCGGGGGCCGCCTTGCTCTGCTTGCCGGAATGCTTCTCACT
TGTAGGCTCCTCCTGGCGAGAAACTGTCGCGGCGGGACAGCCCATTGAAG
GACCCATGGTGAGTGAAATGCGTACTTTGGCCAAGGAGCAAGGTCTGTGG
CTTTCTCTCGGAGGGTTTCCTGAGAAGATGCCATCACCTCAGAATTCGAA
AATAGAAGACAGCGGGGATGAGAACGAGAGAGTGTATAACACCCACATTG
TCCTCGACGACAAAGGAGATATCAAAGCACTCTACCGTAAAATCCACCTG
TTTGACGTCAACTTTCCAAATGGCCCAGTGTTGCAAGAAAGCAAATATAC
TGCTCCCGGCGCCGAGGTGGTAGTCATTGATTCCCCCATCGGCCGACTGG
GTCTCTCCACCTGCTACGACCTCCGTTTTCCCGAATTGTACCAGGCATTG
GTCAAAAGAGGCGCAGAGGTCCTTCTTGTCCCATCAGCATTTACAGTCTT
GACAGGACAAGCCCATTGGGAGATCTTACTTCGGGCCAGAGCTATTGAAA
CGCAATGCTACGTCTTGGCGTCCGCACAAGCAGGACAGCACAACGAAAAA
CGGGCGTCGTACGGGCACTCTTTAATAGTAGACCCGTGGGGGAAAGTGAT
GGAAGATGCGGGGGGCGACGCATCACCGGCACTGGTGATGGCGGAGATTG
ATTTAAAGAGACTACATGAGATAAGGGCAAAGATTCCCGTACAGTTGCAT
CGACGGCGGGATGTGTTTTTCGGGGTAAGCGGTGTTGGTCATAGTAAAGG
AGGAGGAGGAGAAGGAGGAGGAGGAATTGGGACTGCGCCATCGGTGTGA
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Coding sequence (CDS) from alignment at chr5:968615..969613+

>NO05G03700.1 ID=NO05G03700.1|Name=NO05G03700.1|organism=Nannochloropsis oceanica|type=CDS|length=999bp|location=Sequence derived from alignment at chr5:968615..969613+ (Nannochloropsis oceanica)
ATGCGCTTTGCCAGTCTTGCATCTGCCGCCGCCGCAACCGCTGCCAGCAG
CAGCCGCCTGCCCATGAACCCTCTCGTCGCAGTGGGGCAACTCACCTCCA
CGGAAGACCGAGACCAGAACATCCGACGCTGTAGAGACCTAGCTGTTCGC
GCAAAAAAAGCGGGGGCCGCCTTGCTCTGCTTGCCGGAATGCTTCTCACT
TGTAGGCTCCTCCTGGCGAGAAACTGTCGCGGCGGGACAGCCCATTGAAG
GACCCATGGTGAGTGAAATGCGTACTTTGGCCAAGGAGCAAGGTCTGTGG
CTTTCTCTCGGAGGGTTTCCTGAGAAGATGCCATCACCTCAGAATTCGAA
AATAGAAGACAGCGGGGATGAGAACGAGAGAGTGTATAACACCCACATTG
TCCTCGACGACAAAGGAGATATCAAAGCACTCTACCGTAAAATCCACCTG
TTTGACGTCAACTTTCCAAATGGCCCAGTGTTGCAAGAAAGCAAATATAC
TGCTCCCGGCGCCGAGGTGGTAGTCATTGATTCCCCCATCGGCCGACTGG
GTCTCTCCACCTGCTACGACCTCCGTTTTCCCGAATTGTACCAGGCATTG
GTCAAAAGAGGCGCAGAGGTCCTTCTTGTCCCATCAGCATTTACAGTCTT
GACAGGACAAGCCCATTGGGAGATCTTACTTCGGGCCAGAGCTATTGAAA
CGCAATGCTACGTCTTGGCGTCCGCACAAGCAGGACAGCACAACGAAAAA
CGGGCGTCGTACGGGCACTCTTTAATAGTAGACCCGTGGGGGAAAGTGAT
GGAAGATGCGGGGGGCGACGCATCACCGGCACTGGTGATGGCGGAGATTG
ATTTAAAGAGACTACATGAGATAAGGGCAAAGATTCCCGTACAGTTGCAT
CGACGGCGGGATGTGTTTTTCGGGGTAAGCGGTGTTGGTCATAGTAAAGG
AGGAGGAGGAGAAGGAGGAGGAGGAATTGGGACTGCGCCATCGGTGTGA
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Synonyms
Publications