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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:965981..968338 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03690.1 vs.
Match: EWM27930.1 (serine protease family [Nannochloropsis gaditana]) HSP 1 Score: 574.3 bits (1479), Expect = 5.700e-160 Identity = 376/792 (47.47%), Postives = 472/792 (59.60%), Query Frame = 0
Query: 4 RTSSTGSPQLDGPPQ-THCRDHRRRASCAQCQHQRHPQQIHEPRAPPRNASDMYEQLLLGIIRPPRLGYEFPHALGPVTLSFSDGTVCHRTDFDVENGRNQKLGCSLWQPAGAETQDGWPCVIFLHGNSSSRVEAVKTNVLKSVMASGSALVGFDFTGCGNADGEYISLGWFEVHDTRQVIDELRRRGCGRIVLHGRSMGAVTALQYTIQACTVSSPPSHSSSSSSCSFSSASCYSSSSSMVIPAGLVLDSPFSGFKKLAYDLTSKGMVHIPHFATAAVLSLLRRSVRSRAGFDLFKLKPIKHVHHCTTVPALFLVAEDDELIPPWHAEGLRSKYGGPSLGIRFAGSHNSPRPAVVYALASVFVKAVNERESRFGSVAVDLALHLIETTAVVTSQKEEEEEEEEDREHGEEIMEDLKDDM------YKGTHVSPRRHLQQHCQQQQQQQRRRRLRRQRYRGPYSYYYEHACSSSRGTQALRANHNDRAGRLKRIINKIETDGKQVSTRKGKMCEGGVAGGPHFIHAGSRPVGNIFLTSKRLIGALDVNLATRAVEEYLLEELVGVAVAIVQMQVQAVIKAEKQQQQQQQQR--QQSQQGKDDAMLSASAPVPLLSKTLMLDVVAQTQRRLAERASWALPSSSASTSTSTSTSTSSTSTIKKEGTPFSLSEASGPSLTSWESVIYAEGQEQWNEIRRIVSCLKRLFLKDTQVVVQDSYSSILPAP-APAVAPPSPAAAAAKGTAIANPVMRPQMAWATSFGTKLCCFDTRDAYLSEGQEKGAGIARVAEAVLR 786
+TS+T Q + P Q + R HRR + +R Q PR A MYEQL+ GIIRPPRL Y FP ALGP T+SFSDGT CHRTDF+V+N R QKLGCSLW P+GA+ WPCV++LHGNSSSRVEAV+T+VL +VMA+GSALVGFDF GCGNADG+YISLGWFE HDT V++EL+RRGCG IVL GRSMGAVTALQYT++AC SSP ++ V+PAGL+LDSPFSGFK+LAYDLTSKGMVHIP FATAAVLS LRRSVR R GFDL +LKP KHV CT+VPALF VAEDDELIPPWH E L +YGGPSLGIRF GSHN+PRP +VYALASVF+KAV E + +AV LA+ LIE TAV+T EEEE R GE+ + + D+ +G + + H QQQ Q RR + + RGP+ YYYE + S+G Q+ R G L G KG P FIHAGS V NI T+K LI A + ATR VE LLEE++ V VAIVQ +++A++ A++ +Q+ + + DA PV ++ +L VA+TQ+ L AL S K+ T S + SLT+WESV+YAEG+E + RRI+ +RL + +++ +P P+++ S A + A + A+AT GT+LCCF+ RD LS +K + VAEA L+
Sbjct: 14 QTSTTAPSQREAPSQPSQARPHRRPNRSGEHGSRRTRQ--------PRTAVRMYEQLISGIIRPPRLTYHFPRALGPTTISFSDGTECHRTDFEVDNHRGQKLGCSLWLPSGAKAGGKWPCVVYLHGNSSSRVEAVRTHVLNAVMATGSALVGFDFAGCGNADGDYISLGWFEAHDTGLVLEELQRRGCGPIVLFGRSMGAVTALQYTVKACA-SSPSPYA--------------------VLPAGLILDSPFSGFKRLAYDLTSKGMVHIPRFATAAVLSFLRRSVRHRVGFDLLQLKPSKHVQRCTSVPALFFVAEDDELIPPWHGEILERRYGGPSLGIRFVGSHNTPRPPIVYALASVFIKAVTEGPA--NPMAVGLAVRLIEKTAVMT----REEEEARLRVKGEQEVSPQEHDLGREVPCAQGEREQHQPEQRGHGQQQGAQPRRGQRQGAPRRGPFFYYYEAQDAKSKGLQS-------RGGAL----------GGGCGQGKGGQGPRNRGESPRFIHAGSHVVTNITETAKSLISAWQASAATRMVEAVLLEEVIAVGVAIVQAKLRALVLADRPAEQRIHTKAGANERDATADAGTPGLVPVCPYTEARILQAVAETQQEL------ALAKGRVRVSEG------------KKMTGLSSRKPLDVSLTTWESVVYAEGREHCQQTRRILGGFERLLNRPRGPAGRNASDETIPVMCTPSISAESHIGATRREAETAE--IAGNSAFAT-LGTRLCCFNPRDVSLSVAHDKEFWVFPVAEAFLK 732
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03690.1 ID=NO05G03690.1|Name=NO05G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2358bp
ATGACGAGAAGAACCTCGTCCACGGGCTCTCCCCAGCTCGACGGCCCGCC
CCAGACTCACTGCCGGGACCATCGTAGACGGGCTTCCTGCGCCCAATGCC
AACACCAACGACATCCCCAGCAAATCCACGAGCCGCGAGCGCCGCCACGC
AACGCTTCGGACATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCC
ACGGCTGGGTTATGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCT
TCTCTGATGGCACAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGT
CGAAATCAAAAATTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGAC
GCAGGACGGATGGCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTC
GCGTGGAGGCGGTGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGC
TCAGCCCTCGTTGGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGA
ATATATCTCCTTAGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAG
ACGAGCTCCGACGAAGAGGCTGTGGCCGCATAGTCCTTCATGGGCGTTCC
ATGGGCGCTGTGACGGCTTTACAGTACACCATTCAAGCATGTACTGTTTC
TTCCCCCCCTTCCCATTCCTCCTCCTCTTCCTCCTGCTCTTTTTCTTCCG
CCTCCTGCTATTCTTCTTCCTCATCTATGGTGATTCCCGCGGGCTTAGTC
CTCGACTCGCCATTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAG
CAAGGGCATGGTCCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCC
TCCTGCGTCGCTCCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTC
AAGCCTATTAAGCATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCT
AGTAGCAGAAGACGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGC
GAAGTAAGTATGGTGGTCCGTCGTTGGGGATTCGGTTTGCGGGCTCACAT
AACAGTCCGAGGCCTGCTGTTGTGTACGCTCTGGCGAGTGTGTTTGTCAA
GGCAGTAAATGAAAGGGAATCGAGGTTTGGCTCGGTGGCTGTGGATTTAG
CTTTACATCTCATAGAAACAACGGCGGTGGTGACCAGTCAAAAAGAGGAG
GAGGAGGAGGAGGAGGAGGATCGAGAGCACGGCGAGGAGATTATGGAGGA
TTTAAAAGATGACATGTACAAGGGTACTCATGTTTCTCCTCGCCGCCATT
TGCAGCAGCATTGCCAGCAACAGCAACAGCAGCAGAGGCGACGACGATTG
CGCCGACAGAGGTATCGTGGGCCTTACAGTTACTACTACGAACACGCCTG
CAGCAGCAGCCGTGGGACACAAGCATTACGTGCCAACCACAACGACAGAG
CAGGACGTCTCAAACGCATCATAAACAAAATCGAGACCGACGGAAAGCAA
GTCAGTACAAGGAAGGGTAAAATGTGCGAGGGAGGGGTGGCAGGAGGGCC
GCACTTCATCCACGCTGGTAGTCGGCCTGTGGGCAACATCTTCCTGACTT
CCAAGAGGTTGATTGGCGCGTTGGATGTCAATCTAGCGACGAGGGCGGTA
GAGGAGTATTTATTGGAGGAACTTGTGGGGGTTGCGGTCGCCATTGTACA
AATGCAGGTGCAGGCTGTGATAAAAGCGGAGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTCACAACAGGGGAAAGATGATGCGATGCTGTCG
GCATCAGCGCCGGTGCCACTTTTAAGCAAGACTTTGATGTTGGATGTGGT
AGCTCAGACGCAGCGGAGACTGGCAGAACGTGCGTCTTGGGCATTGCCAA
GCTCTAGTGCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCACC
AGCACGATAAAGAAGGAAGGCACCCCATTCTCACTCTCCGAAGCGTCGGG
GCCCTCTCTTACTAGCTGGGAGTCTGTTATTTATGCGGAAGGACAAGAGC
AATGGAATGAGATCCGTCGTATTGTCAGTTGTCTGAAGCGACTCTTTTTG
AAGGACACGCAGGTGGTGGTACAAGACTCCTACTCCTCAATTTTACCTGC
TCCTGCGCCTGCCGTGGCACCACCCTCGCCGGCAGCAGCAGCAGCGAAAG
GAACAGCAATAGCGAATCCAGTCATGAGGCCACAGATGGCATGGGCTACA
TCATTCGGAACCAAGCTATGTTGTTTTGATACCCGCGACGCTTACCTTTC
GGAGGGGCAGGAGAAGGGTGCTGGGATAGCCCGCGTGGCCGAGGCCGTGT
TACGATAA back to topprotein sequence of NO05G03690.1 >NO05G03690.1-protein ID=NO05G03690.1-protein|Name=NO05G03690.1|organism=Nannochloropsis oceanica|type=polypeptide|length=786bp
MTRRTSSTGSPQLDGPPQTHCRDHRRRASCAQCQHQRHPQQIHEPRAPPR
NASDMYEQLLLGIIRPPRLGYEFPHALGPVTLSFSDGTVCHRTDFDVENG
RNQKLGCSLWQPAGAETQDGWPCVIFLHGNSSSRVEAVKTNVLKSVMASG
SALVGFDFTGCGNADGEYISLGWFEVHDTRQVIDELRRRGCGRIVLHGRS
MGAVTALQYTIQACTVSSPPSHSSSSSSCSFSSASCYSSSSSMVIPAGLV
LDSPFSGFKKLAYDLTSKGMVHIPHFATAAVLSLLRRSVRSRAGFDLFKL
KPIKHVHHCTTVPALFLVAEDDELIPPWHAEGLRSKYGGPSLGIRFAGSH
NSPRPAVVYALASVFVKAVNERESRFGSVAVDLALHLIETTAVVTSQKEE
EEEEEEDREHGEEIMEDLKDDMYKGTHVSPRRHLQQHCQQQQQQQRRRRL
RRQRYRGPYSYYYEHACSSSRGTQALRANHNDRAGRLKRIINKIETDGKQ
VSTRKGKMCEGGVAGGPHFIHAGSRPVGNIFLTSKRLIGALDVNLATRAV
EEYLLEELVGVAVAIVQMQVQAVIKAEKQQQQQQQQRQQSQQGKDDAMLS
ASAPVPLLSKTLMLDVVAQTQRRLAERASWALPSSSASTSTSTSTSTSST
STIKKEGTPFSLSEASGPSLTSWESVIYAEGQEQWNEIRRIVSCLKRLFL
KDTQVVVQDSYSSILPAPAPAVAPPSPAAAAAKGTAIANPVMRPQMAWAT
SFGTKLCCFDTRDAYLSEGQEKGAGIARVAEAVLR* back to topmRNA from alignment at chr5:965981..968338+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03690.1 ID=NO05G03690.1|Name=NO05G03690.1|organism=Nannochloropsis oceanica|type=mRNA|length=2358bp|location=Sequence derived from alignment at chr5:965981..968338+ (Nannochloropsis oceanica)
ATGACGAGAAGAACCTCGTCCACGGGCTCTCCCCAGCTCGACGGCCCGCC
CCAGACTCACTGCCGGGACCATCGTAGACGGGCTTCCTGCGCCCAATGCC
AACACCAACGACATCCCCAGCAAATCCACGAGCCGCGAGCGCCGCCACGC
AACGCTTCGGACATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCC
ACGGCTGGGTTATGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCT
TCTCTGATGGCACAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGT
CGAAATCAAAAATTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGAC
GCAGGACGGATGGCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTC
GCGTGGAGGCGGTGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGC
TCAGCCCTCGTTGGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGA
ATATATCTCCTTAGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAG
ACGAGCTCCGACGAAGAGGCTGTGGCCGCATAGTCCTTCATGGGCGTTCC
ATGGGCGCTGTGACGGCTTTACAGTACACCATTCAAGCATGTACTGTTTC
TTCCCCCCCTTCCCATTCCTCCTCCTCTTCCTCCTGCTCTTTTTCTTCCG
CCTCCTGCTATTCTTCTTCCTCATCTATGGTGATTCCCGCGGGCTTAGTC
CTCGACTCGCCATTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAG
CAAGGGCATGGTCCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCC
TCCTGCGTCGCTCCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTC
AAGCCTATTAAGCATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCT
AGTAGCAGAAGACGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGC
GAAGTAAGTATGGTGGTCCGTCGTTGGGGATTCGGTTTGCGGGCTCACAT
AACAGTCCGAGGCCTGCTGTTGTGTACGCTCTGGCGAGTGTGTTTGTCAA
GGCAGTAAATGAAAGGGAATCGAGGTTTGGCTCGGTGGCTGTGGATTTAG
CTTTACATCTCATAGAAACAACGGCGGTGGTGACCAGTCAAAAAGAGGAG
GAGGAGGAGGAGGAGGAGGATCGAGAGCACGGCGAGGAGATTATGGAGGA
TTTAAAAGATGACATGTACAAGGGTACTCATGTTTCTCCTCGCCGCCATT
TGCAGCAGCATTGCCAGCAACAGCAACAGCAGCAGAGGCGACGACGATTG
CGCCGACAGAGGTATCGTGGGCCTTACAGTTACTACTACGAACACGCCTG
CAGCAGCAGCCGTGGGACACAAGCATTACGTGCCAACCACAACGACAGAG
CAGGACGTCTCAAACGCATCATAAACAAAATCGAGACCGACGGAAAGCAA
GTCAGTACAAGGAAGGGTAAAATGTGCGAGGGAGGGGTGGCAGGAGGGCC
GCACTTCATCCACGCTGGTAGTCGGCCTGTGGGCAACATCTTCCTGACTT
CCAAGAGGTTGATTGGCGCGTTGGATGTCAATCTAGCGACGAGGGCGGTA
GAGGAGTATTTATTGGAGGAACTTGTGGGGGTTGCGGTCGCCATTGTACA
AATGCAGGTGCAGGCTGTGATAAAAGCGGAGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTCACAACAGGGGAAAGATGATGCGATGCTGTCG
GCATCAGCGCCGGTGCCACTTTTAAGCAAGACTTTGATGTTGGATGTGGT
AGCTCAGACGCAGCGGAGACTGGCAGAACGTGCGTCTTGGGCATTGCCAA
GCTCTAGTGCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCACC
AGCACGATAAAGAAGGAAGGCACCCCATTCTCACTCTCCGAAGCGTCGGG
GCCCTCTCTTACTAGCTGGGAGTCTGTTATTTATGCGGAAGGACAAGAGC
AATGGAATGAGATCCGTCGTATTGTCAGTTGTCTGAAGCGACTCTTTTTG
AAGGACACGCAGGTGGTGGTACAAGACTCCTACTCCTCAATTTTACCTGC
TCCTGCGCCTGCCGTGGCACCACCCTCGCCGGCAGCAGCAGCAGCGAAAG
GAACAGCAATAGCGAATCCAGTCATGAGGCCACAGATGGCATGGGCTACA
TCATTCGGAACCAAGCTATGTTGTTTTGATACCCGCGACGCTTACCTTTC
GGAGGGGCAGGAGAAGGGTGCTGGGATAGCCCGCGTGGCCGAGGCCGTGT
TACGATAA back to topCoding sequence (CDS) from alignment at chr5:965981..968338+ >NO05G03690.1 ID=NO05G03690.1|Name=NO05G03690.1|organism=Nannochloropsis oceanica|type=CDS|length=2358bp|location=Sequence derived from alignment at chr5:965981..968338+ (Nannochloropsis oceanica)
ATGACGAGAAGAACCTCGTCCACGGGCTCTCCCCAGCTCGACGGCCCGCC
CCAGACTCACTGCCGGGACCATCGTAGACGGGCTTCCTGCGCCCAATGCC
AACACCAACGACATCCCCAGCAAATCCACGAGCCGCGAGCGCCGCCACGC
AACGCTTCGGACATGTACGAGCAGCTCTTGCTAGGAATCATCCGCCCTCC
ACGGCTGGGTTATGAATTCCCTCATGCCTTGGGACCTGTCACGCTCTCCT
TCTCTGATGGCACAGTGTGTCACAGAACCGACTTTGATGTGGAGAATGGT
CGAAATCAAAAATTGGGATGTAGTTTGTGGCAACCGGCAGGGGCGGAGAC
GCAGGACGGATGGCCCTGCGTCATTTTTTTGCACGGAAATTCGAGCAGTC
GCGTGGAGGCGGTGAAAACAAATGTGTTGAAATCCGTGATGGCAAGCGGC
TCAGCCCTCGTTGGCTTTGACTTTACTGGGTGTGGCAACGCCGACGGAGA
ATATATCTCCTTAGGTTGGTTCGAGGTACACGACACACGCCAGGTGATAG
ACGAGCTCCGACGAAGAGGCTGTGGCCGCATAGTCCTTCATGGGCGTTCC
ATGGGCGCTGTGACGGCTTTACAGTACACCATTCAAGCATGTACTGTTTC
TTCCCCCCCTTCCCATTCCTCCTCCTCTTCCTCCTGCTCTTTTTCTTCCG
CCTCCTGCTATTCTTCTTCCTCATCTATGGTGATTCCCGCGGGCTTAGTC
CTCGACTCGCCATTTTCAGGGTTCAAAAAGCTTGCCTACGATCTCACCAG
CAAGGGCATGGTCCACATCCCTCATTTCGCCACCGCCGCCGTCCTGTCCC
TCCTGCGTCGCTCCGTCCGTTCTCGTGCCGGCTTTGATTTATTTAAGCTC
AAGCCTATTAAGCATGTACACCACTGCACAACTGTCCCAGCTCTTTTCCT
AGTAGCAGAAGACGATGAGTTAATTCCTCCCTGGCACGCCGAGGGTCTGC
GAAGTAAGTATGGTGGTCCGTCGTTGGGGATTCGGTTTGCGGGCTCACAT
AACAGTCCGAGGCCTGCTGTTGTGTACGCTCTGGCGAGTGTGTTTGTCAA
GGCAGTAAATGAAAGGGAATCGAGGTTTGGCTCGGTGGCTGTGGATTTAG
CTTTACATCTCATAGAAACAACGGCGGTGGTGACCAGTCAAAAAGAGGAG
GAGGAGGAGGAGGAGGAGGATCGAGAGCACGGCGAGGAGATTATGGAGGA
TTTAAAAGATGACATGTACAAGGGTACTCATGTTTCTCCTCGCCGCCATT
TGCAGCAGCATTGCCAGCAACAGCAACAGCAGCAGAGGCGACGACGATTG
CGCCGACAGAGGTATCGTGGGCCTTACAGTTACTACTACGAACACGCCTG
CAGCAGCAGCCGTGGGACACAAGCATTACGTGCCAACCACAACGACAGAG
CAGGACGTCTCAAACGCATCATAAACAAAATCGAGACCGACGGAAAGCAA
GTCAGTACAAGGAAGGGTAAAATGTGCGAGGGAGGGGTGGCAGGAGGGCC
GCACTTCATCCACGCTGGTAGTCGGCCTGTGGGCAACATCTTCCTGACTT
CCAAGAGGTTGATTGGCGCGTTGGATGTCAATCTAGCGACGAGGGCGGTA
GAGGAGTATTTATTGGAGGAACTTGTGGGGGTTGCGGTCGCCATTGTACA
AATGCAGGTGCAGGCTGTGATAAAAGCGGAGAAGCAGCAGCAGCAGCAGC
AGCAGCAGCGGCAGCAGTCACAACAGGGGAAAGATGATGCGATGCTGTCG
GCATCAGCGCCGGTGCCACTTTTAAGCAAGACTTTGATGTTGGATGTGGT
AGCTCAGACGCAGCGGAGACTGGCAGAACGTGCGTCTTGGGCATTGCCAA
GCTCTAGTGCCAGCACCAGCACCAGCACCAGCACCAGCACCAGCAGCACC
AGCACGATAAAGAAGGAAGGCACCCCATTCTCACTCTCCGAAGCGTCGGG
GCCCTCTCTTACTAGCTGGGAGTCTGTTATTTATGCGGAAGGACAAGAGC
AATGGAATGAGATCCGTCGTATTGTCAGTTGTCTGAAGCGACTCTTTTTG
AAGGACACGCAGGTGGTGGTACAAGACTCCTACTCCTCAATTTTACCTGC
TCCTGCGCCTGCCGTGGCACCACCCTCGCCGGCAGCAGCAGCAGCGAAAG
GAACAGCAATAGCGAATCCAGTCATGAGGCCACAGATGGCATGGGCTACA
TCATTCGGAACCAAGCTATGTTGTTTTGATACCCGCGACGCTTACCTTTC
GGAGGGGCAGGAGAAGGGTGCTGGGATAGCCCGCGTGGCCGAGGCCGTGT
TACGATAA back to top
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