NO05G03640.1, NO05G03640.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03640.1
Unique NameNO05G03640.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length922
Alignment locationchr5:958563..959833 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:958563..959833 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03640.1 vs.
Match: XP_005853651.1 (centrin 3 [Nannochloropsis gaditana CCMP526]; EKU22709.1 centrin 3 [Nannochloropsis gaditana CCMP526]; EWM27953.1 centrin 3 [Nannochloropsis gaditana])

HSP 1 Score: 264.2 bits (674), Expect = 2.700e-67
Identity = 132/168 (78.57%), Postives = 150/168 (89.29%), Query Frame = 0 
Query:    2 LTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHELKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDPQEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDGDGSINEEEFLQIMKGSGSF 170
            + T   G   +  TK KGR+QLT EQKEEFTTSFQLFD++GK AIDLHELKVLMRALGFNI K++++ALVREIDPTNHG+VSFDTYLE+MTD+ASRRDP EEMKKAFLLFAG+K +I+VQDL+RV KQLGEKMSE+EL AMVAEFDRDGDG INEEEFLQIMKGSG+F
Sbjct:    3 MLTHSLGNLQMPSTKSKGRYQLTLEQKEEFTTSFQLFDTDGKGAIDLHELKVLMRALGFNIPKREVVALVREIDPTNHGMVSFDTYLEVMTDMASRRDPLEEMKKAFLLFAGDKDVISVQDLRRVSKQLGEKMSEDELAAMVAEFDRDGDGCINEEEFLQIMKGSGTF 170
The following BLAST results are available for this feature:
BLAST of NO05G03640.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_005853651.12.700e-6778.57centrin 3 [Nannochloropsis gaditana CCMP526]; EKU2... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03640NO05G03640Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03640.1NO05G03640.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03640.1.cds1NO05G03640.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03640.1.cds2NO05G03640.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03640.1.cds3NO05G03640.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03640.1 ID=NO05G03640.1|Name=NO05G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=922bp
TCTTCAGACCCCATTTTATCACAAATGTGAATTCACGAGAAAGACTTTCC
TTCCACTCTTTCACAAGGTCCACAGTCACGAATTCCCGTACGCCTGACTG
GCCGATATAACACTTAGACGATAACCTCAATCATTTAGTGCTAGTGGAAA
CGAAACCATGTTTGCTTAGCTCACGCACCGATTCACCCGTTCCTTGCTCA
AGCCCTGTCCCCCCAACCCCACATGCACGCGATCACGGTCCTGCTACACA
CCCAGGTAGCATCAACGCAGCATTTAAAACAACTTATAAGTAAGTATGCT
GACTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACCAAAAG
GGCGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCAGCTTC
CAATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAACTCAA
GGTCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAATTTTGG
CCCTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTTTCGAC
ACATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCCCAAGA
AGAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATCA
ATGTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTCG
GAAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGAGACGGGGATGG
CTCCATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGGTTCTT
TTTGACAGCAACGCAAAAAACTCCAAAGCAGGTGAACTATAAGAATATGT
GAAAAGAAGGAGGCGACACCGGAAAGCAGAAGAGGAGAGGGAAAACAACC
AAAAAGAGACCTGTAGCATGAT
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protein sequence of NO05G03640.1

>NO05G03640.1-protein ID=NO05G03640.1-protein|Name=NO05G03640.1|organism=Nannochloropsis oceanica|type=polypeptide|length=170bp
MLTTSGRGGGSITMTKPKGRFQLTNEQKEEFTTSFQLFDSEGKNAIDLHE
LKVLMRALGFNISKQQILALVREIDPTNHGIVSFDTYLEIMTDVASRRDP
QEEMKKAFLLFAGEKGLINVQDLKRVCKQLGEKMSEEELGAMVAEFDRDG
DGSINEEEFLQIMKGSGSF*
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mRNA from alignment at chr5:958563..959833-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03640.1 ID=NO05G03640.1|Name=NO05G03640.1|organism=Nannochloropsis oceanica|type=mRNA|length=1271bp|location=Sequence derived from alignment at chr5:958563..959833- (Nannochloropsis oceanica)
TCTTCAGACCCCATTTTATCACAAATGTGAATTCACGAGAAAGACTTTCC
TTCCACTCTTTCACAAGGTCCACAGTCACGAATTCCCGTACGCCTGACTG
GCCGATATAACACTTAGACGATAACCTCAATCATTTAGTGCTAGTGGAAA
CGAAACCATGTTTGCTTAGCTCACGCACCGATTCACCCGTTCCTTGCTCA
AGCCCTGTCCCCCCAACCCCACATGCACGCGATCACGGTCCTGCTACACA
CCCAGGTAGCATCAACGCAGCATTTAAAACAACTTATAAGTAAGTATGCT
GACTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACCAAAAG
GGCGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCAGCTTC
CAATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAACTCAA
GGTATTCAGTAGACTGCATTGTCTCACTTTAGTGCATTACAGGCGCTCTT
TTCTTCTCCGCGTCCTCTGATCCCACTCTCCTTCCCCCCTCCGACGAATC
AGGTCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAATTTTG
GCCCTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTTTCGA
CACATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCCCAAG
AAGAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTTGATC
AATGTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAATGTC
GGAAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGGTGAGTGGGTG
GAATGGTTTGGGAGGGTGGGGTGGGATGAAAAAGAGTGGAAGAGGTCGGA
TCCGTCAAAAGCGGAAGCTTGCAGAGACCAAAAAGATTTGGCGAGCTCTG
CGCTTTGATAAACGTTTTCACTTCTCACTACAATGATGCATTACTACAGT
CGTGCGTACTATCTATCTACGCAACCGTTTCTTTTTTTCTCTTTCATCTC
ATCTCTCCACTCACGCACACTCCTTTCTCCCCAACAGAGACGGGGATGGC
TCCATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGGTTCTTT
TTGACAGCAACGCAAAAAACTCCAAAGCAGGTGAACTATAAGAATATGTG
AAAAGAAGGAGGCGACACCGGAAAGCAGAAGAGGAGAGGGAAAACAACCA
AAAAGAGACCTGTAGCATGAT
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Coding sequence (CDS) from alignment at chr5:958563..959833-

>NO05G03640.1 ID=NO05G03640.1|Name=NO05G03640.1|organism=Nannochloropsis oceanica|type=CDS|length=510bp|location=Sequence derived from alignment at chr5:958563..959833- (Nannochloropsis oceanica)
ATGCTGACTACTTCGGGCCGCGGTGGCGGAAGCATAACCATGACTAAACC
AAAAGGGCGTTTCCAGCTTACAAATGAGCAAAAGGAAGAATTCACGACCA
GCTTCCAATTGTTTGACTCCGAGGGGAAGAACGCAATCGACTTGCACGAA
CTCAAGGTCCTTATGCGTGCCCTGGGTTTCAACATCTCCAAGCAACAAAT
TTTGGCCCTCGTCCGCGAGATCGACCCAACAAACCATGGCATCGTCTCTT
TCGACACATATCTGGAGATAATGACCGATGTTGCCTCTCGCCGTGATCCC
CAAGAAGAAATGAAGAAAGCTTTCTTGCTCTTTGCCGGCGAGAAAGGGTT
GATCAATGTGCAGGATTTGAAGAGGGTCTGTAAACAGCTGGGGGAGAAAA
TGTCGGAAGAGGAGTTGGGGGCAATGGTGGCGGAGTTTGATAGAGACGGG
GATGGCTCCATCAACGAGGAAGAATTTCTTCAAATCATGAAAGGAAGCGG
TTCTTTTTGA
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Synonyms
Publications