NO05G03580.1, NO05G03580.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03580.1
Unique NameNO05G03580.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1668
Alignment locationchr5:944809..947044 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:944809..947044 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03580.1 vs.
Match: EWM28045.1 (pre-mrna-splicing factor 38b [Nannochloropsis gaditana])

HSP 1 Score: 400.2 bits (1027), Expect = 1.000e-107
Identity = 189/239 (79.08%), Postives = 215/239 (89.96%), Query Frame = 0 
Query:   66 MSRAALWKAEQLQAAQPNLP-PPLPESISAKALPIHGNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWATGTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFALDPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLPRIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADNDPAW 304
            MSRAALWKA+QL+A QP L  PP PE++ + ALPIHGNQTT+NVN+LLANNIM CDYFRALYPLQTYHEVIDE+Y K T+VEPWATGTSR+PSTAFCLLFKFFTMRLT++Q+TGLLTH DSPYIRAIGFLYLR+A DPK++W+W+APYLDD+EEF PSSDPNA+ T+G WLR LLS+L YY TMLPRIPVP+ERKIKMRLVL+DEKKKRA+ NRR  G FR G RVKAIYEDA+NDPAW
Sbjct:    1 MSRAALWKADQLRATQPVLAAPPPPEALPSGALPIHGNQTTYNVNTLLANNIMGCDYFRALYPLQTYHEVIDEVYNKVTHVEPWATGTSRLPSTAFCLLFKFFTMRLTKKQVTGLLTHSDSPYIRAIGFLYLRYACDPKQIWDWYAPYLDDSEEFAPSSDPNALTTLGLWLRGLLSDLHYYGTMLPRIPVPLERKIKMRLVLVDEKKKRAAGNRRQMGAFRAGARVKAIYEDAENDPAW 239
The following BLAST results are available for this feature:
BLAST of NO05G03580.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28045.11.000e-10779.08pre-mrna-splicing factor 38b [Nannochloropsis gadi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03580NO05G03580Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03580.1NO05G03580.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03580.1.cds1NO05G03580.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03580.1.cds2NO05G03580.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03580.1.cds3NO05G03580.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03580.1.cds4NO05G03580.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03580.1 ID=NO05G03580.1|Name=NO05G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=1668bp
ATGGTATGTGCCCTGGTCTTGAGGCTTGCTGCCGAGGACGAGCTCCTCCA
TCCCTTCTGCCGCCCACAACGCAAATCTCATGCCCTCACGACATTTACGT
CGTACAGGGCCGTCTGGCAGCATATCCGGTGTCTCTGCCTGCTGCAGCAC
ATTTTGGAGCCTTGCTTTACGGTCACCATCAACAGCGCCGAAGCGATGTC
GCGGGCCGCATTATGGAAGGCCGAGCAGCTCCAGGCCGCCCAACCCAACC
TGCCGCCACCTCTCCCTGAGTCTATTTCAGCCAAAGCTTTGCCTATTCAC
GGCAACCAGACCACGTTTAATGTCAACAGTTTGCTCGCAAACAACATCAT
GAGCTGCGACTACTTCCGGGCACTGTACCCCTTGCAGACGTACCATGAGG
TGATTGATGAGATTTATCTGAAGTGTACGAATGTGGAGCCATGGGCGACG
GGCACCTCCCGCGTGCCCTCTACGGCATTTTGTCTTTTGTTCAAGTTCTT
CACCATGCGCCTCACCGAAAGACAAATCACCGGCCTGCTCACCCACGGAG
ACTCCCCCTACATCCGAGCAATCGGCTTCCTCTACCTTCGCTTCGCCCTG
GACCCCAAAGAAATGTGGGAATGGTTTGCCCCTTATCTTGATGACACTGA
GGAATTCACCCCCTCCTCGGACCCGAACGCTGTGATGACTATTGGGCAAT
GGTTGAGGAAGTTGCTATCGGAGTTACAGTACTATAACACGATGCTCCCC
AGGATCCCTGTGCCTATTGAACGGAAAATCAAAATGCGGTTGGTCCTGTT
GGACGAGAAGAAAAAAAGGGCCTCAGCAAACAGACGACACGAGGGAAAGT
TCAGGGAAGGAGTGAGAGTGAAGGCCATATACGAAGATGCTGACAATGAT
CCTGCGTGGTACACGGCGGCGATTAGTGAGGTCTTGGAGGGGGAGGAGGA
GGGCGGGAGGGAAGATGGACCCAGATTTCTAGTAACGTTTGATGGGTATG
GGAACCAGGAGGTGTTGGGGTTGGGGGATATGATGTTAATGGAAGGAGGG
AGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCGGAGTCGCAGCAGGAGCAG
GAGTGTGAGCAATCGATGGAAGAAGAAGGAGAGAGGCAGGAGTGGAAGCC
GGAGCAGGAGCAGGAGCAGGTCGCGAGCGGACCGAGGAGGAGGACGACGC
CGGCGTGATGGCGATGAGAGCGAATATGAAGGCGGAGATGGTAATGGAGG
ACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTTTACTCGGGCAGAATCTGA
TGGACGCCGTTCGGAGGAGGGAGAGGGAAGCCGCCTCGGCACGGGGTAAG
GATTACGCACAGCGGCCCACTTCTTGCAAGGGATCATTGTCAATGAAGCA
TGACACCTACTCCCATCGAGGCAGGAAGCATCCCTCTCAAGACCGAGACC
GCCGTCGTTCTCGTTCCCGCTCTCCGCGCCATTCCTCCTCATCCTCTCAC
TCCTCCCGTCAACGCAACCCTACCTCTGATAGAGAGCGAGAACGAGGAAG
GGAGAGGGATCATCACGACAAGGACCGCCCTCAGGCTGCCCCCAAGCCCG
AGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTTTATGGAGATGCCTCAGCA
GTGAAGGAGGGCAAGTAA
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protein sequence of NO05G03580.1

>NO05G03580.1-protein ID=NO05G03580.1-protein|Name=NO05G03580.1|organism=Nannochloropsis oceanica|type=polypeptide|length=556bp
MVCALVLRLAAEDELLHPFCRPQRKSHALTTFTSYRAVWQHIRCLCLLQH
ILEPCFTVTINSAEAMSRAALWKAEQLQAAQPNLPPPLPESISAKALPIH
GNQTTFNVNSLLANNIMSCDYFRALYPLQTYHEVIDEIYLKCTNVEPWAT
GTSRVPSTAFCLLFKFFTMRLTERQITGLLTHGDSPYIRAIGFLYLRFAL
DPKEMWEWFAPYLDDTEEFTPSSDPNAVMTIGQWLRKLLSELQYYNTMLP
RIPVPIERKIKMRLVLLDEKKKRASANRRHEGKFREGVRVKAIYEDADND
PAWYTAAISEVLEGEEEGGREDGPRFLVTFDGYGNQEVLGLGDMMLMEGG
REGGREGGRSRSRSRSRSVSNRWKKKERGRSGSRSRSRSRSRADRGGGRR
RRDGDESEYEGGDGNGGRGGGRGEGESLLGQNLMDAVRRREREAASARGK
DYAQRPTSCKGSLSMKHDTYSHRGRKHPSQDRDRRRSRSRSPRHSSSSSH
SSRQRNPTSDRERERGRERDHHDKDRPQAAPKPESQKLKALKAVYGDASA
VKEGK*
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mRNA from alignment at chr5:944809..947044+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03580.1 ID=NO05G03580.1|Name=NO05G03580.1|organism=Nannochloropsis oceanica|type=mRNA|length=2236bp|location=Sequence derived from alignment at chr5:944809..947044+ (Nannochloropsis oceanica)
ATGGTATGTGCCCTGGTCTTGAGGCTTGCTGCCGAGGACGAGCTCCTCCA
TCCCTTCTGCCGCCCACAACGCAAATCTCATGCCCTCACGTACCTCTTCA
GCTAGCCCAGTCAATTGCTGAAATCTTTGTCCTTGTATATCTGTGCTTGG
GAGGGGGATGGTGGTGAGAGTGGGAGGGCGTCCGAAGTCAGAGGAACAAG
CGGCGATAAGGAGGAAGCCAGGAGCAAGATGCCCCCTTTCGTGACTGAAG
CCCCACATACACTTACAACCCTACATTGACGTCGTACAGGACATTTACGT
CGTACAGGGCCGTCTGGCAGCATATCCGGTGTCTCTGCCTGCTGCAGCAC
ATTTTGGAGCCTTGCTTTACGGTCACCATCAACAGGTAAGCACCGGCCGG
CCTTTCACGATACTTCCGATGCCCTTCTGGCTCCTTGCTCCTGCTCTGCC
CTCCGTCGGAGCCTCGGCCACTGCACGACGGCTGCACTTCTCCTTCCTAC
AACTCTAGATAGTGGACACGCCGTGTCTCATAAATTTTCTTCTCCCTGTG
CTAACCTCAAGGTTTGGTCTCGTTGCCCTCAACCTCTCCACCCACTCTCC
ATTCCTCTGCACAGCGCCGAAGCGATGTCGCGGGCCGCATTATGGAAGGC
CGAGCAGCTCCAGGCCGCCCAACCCAACCTGCCGCCACCTCTCCCTGAGT
CTATTTCAGCCAAAGCTTTGCCTATTCACGGCAACCAGACCACGTTTAAT
GTCAACAGTTTGCTCGCAAACAACATCATGAGCTGCGACTACTTCCGGGC
ACTGTACCCCTTGCAGACGTACCATGAGGTGATTGATGAGATTTATCTGA
AGTGTACGAATGTGGAGCCATGGGCGACGGGCACCTCCCGCGTGCCCTCT
ACGGCATTTTGTCTTTTGTTCAAGTAAGTCCGCCGAGGGAGTGGAAAAGC
GAGAGTGGGGTAGAAAAACATGGTTCAGTCTAGTCTTCTAGTTTCCTGAA
AAGTGCATTTGGCATTCAATGACACCCTCGCTCCTTTCTACTTTCCCTTC
CTCCCTCGCCAGGTTCTTCACCATGCGCCTCACCGAAAGACAAATCACCG
GCCTGCTCACCCACGGAGACTCCCCCTACATCCGAGCAATCGGCTTCCTC
TACCTTCGCTTCGCCCTGGACCCCAAAGAAATGTGGGAATGGTTTGCCCC
TTATCTTGATGACACTGAGGAATTCACCCCCTCCTCGGACCCGAACGCTG
TGATGACTATTGGGCAATGGTTGAGGAAGTTGCTATCGGAGTTACAGTAC
TATAACACGATGCTCCCCAGGATCCCTGTGCCTATTGAACGGAAAATCAA
AATGCGGTTGGTCCTGTTGGACGAGAAGAAAAAAAGGGCCTCAGCAAACA
GACGACACGAGGGAAAGTTCAGGGAAGGAGTGAGAGTGAAGGCCATATAC
GAAGATGCTGACAATGATCCTGCGTGGTACACGGCGGCGATTAGTGAGGT
CTTGGAGGGGGAGGAGGAGGGCGGGAGGGAAGATGGACCCAGATTTCTAG
TAACGTTTGATGGGTATGGGAACCAGGAGGTGTTGGGGTTGGGGGATATG
ATGTTAATGGAAGGAGGGAGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCG
GAGTCGCAGCAGGAGCAGGAGTGTGAGCAATCGATGGAAGAAGAAGGAGA
GAGGCAGGAGTGGAAGCCGGAGCAGGAGCAGGAGCAGGTCGCGAGCGGAC
CGAGGAGGAGGACGACGCCGGCGTGATGGCGATGAGAGCGAATATGAAGG
CGGAGATGGTAATGGAGGACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTT
TACTCGGGCAGAATCTGATGGACGCCGTTCGGAGGAGGGAGAGGGAAGCC
GCCTCGGCACGGGGTAAGGATTACGCACAGCGGCCCACTTCTTGCAAGGG
ATCATTGTCAATGAAGCATGACACCTACTCCCATCGAGGCAGGAAGCATC
CCTCTCAAGACCGAGACCGCCGTCGTTCTCGTTCCCGCTCTCCGCGCCAT
TCCTCCTCATCCTCTCACTCCTCCCGTCAACGCAACCCTACCTCTGATAG
AGAGCGAGAACGAGGAAGGGAGAGGGATCATCACGACAAGGACCGCCCTC
AGGCTGCCCCCAAGCCCGAGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTT
TATGGAGATGCCTCAGCAGTGAAGGAGGGCAAGTAA
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Coding sequence (CDS) from alignment at chr5:944809..947044+

>NO05G03580.1 ID=NO05G03580.1|Name=NO05G03580.1|organism=Nannochloropsis oceanica|type=CDS|length=1668bp|location=Sequence derived from alignment at chr5:944809..947044+ (Nannochloropsis oceanica)
ATGGTATGTGCCCTGGTCTTGAGGCTTGCTGCCGAGGACGAGCTCCTCCA
TCCCTTCTGCCGCCCACAACGCAAATCTCATGCCCTCACGACATTTACGT
CGTACAGGGCCGTCTGGCAGCATATCCGGTGTCTCTGCCTGCTGCAGCAC
ATTTTGGAGCCTTGCTTTACGGTCACCATCAACAGCGCCGAAGCGATGTC
GCGGGCCGCATTATGGAAGGCCGAGCAGCTCCAGGCCGCCCAACCCAACC
TGCCGCCACCTCTCCCTGAGTCTATTTCAGCCAAAGCTTTGCCTATTCAC
GGCAACCAGACCACGTTTAATGTCAACAGTTTGCTCGCAAACAACATCAT
GAGCTGCGACTACTTCCGGGCACTGTACCCCTTGCAGACGTACCATGAGG
TGATTGATGAGATTTATCTGAAGTGTACGAATGTGGAGCCATGGGCGACG
GGCACCTCCCGCGTGCCCTCTACGGCATTTTGTCTTTTGTTCAAGTTCTT
CACCATGCGCCTCACCGAAAGACAAATCACCGGCCTGCTCACCCACGGAG
ACTCCCCCTACATCCGAGCAATCGGCTTCCTCTACCTTCGCTTCGCCCTG
GACCCCAAAGAAATGTGGGAATGGTTTGCCCCTTATCTTGATGACACTGA
GGAATTCACCCCCTCCTCGGACCCGAACGCTGTGATGACTATTGGGCAAT
GGTTGAGGAAGTTGCTATCGGAGTTACAGTACTATAACACGATGCTCCCC
AGGATCCCTGTGCCTATTGAACGGAAAATCAAAATGCGGTTGGTCCTGTT
GGACGAGAAGAAAAAAAGGGCCTCAGCAAACAGACGACACGAGGGAAAGT
TCAGGGAAGGAGTGAGAGTGAAGGCCATATACGAAGATGCTGACAATGAT
CCTGCGTGGTACACGGCGGCGATTAGTGAGGTCTTGGAGGGGGAGGAGGA
GGGCGGGAGGGAAGATGGACCCAGATTTCTAGTAACGTTTGATGGGTATG
GGAACCAGGAGGTGTTGGGGTTGGGGGATATGATGTTAATGGAAGGAGGG
AGGGAAGGAGGGAGGGAAGGAGGAAGAAGCCGGAGTCGCAGCAGGAGCAG
GAGTGTGAGCAATCGATGGAAGAAGAAGGAGAGAGGCAGGAGTGGAAGCC
GGAGCAGGAGCAGGAGCAGGTCGCGAGCGGACCGAGGAGGAGGACGACGC
CGGCGTGATGGCGATGAGAGCGAATATGAAGGCGGAGATGGTAATGGAGG
ACGGGGGGGAGGAAGAGGGGAAGGTGAGAGTTTACTCGGGCAGAATCTGA
TGGACGCCGTTCGGAGGAGGGAGAGGGAAGCCGCCTCGGCACGGGGTAAG
GATTACGCACAGCGGCCCACTTCTTGCAAGGGATCATTGTCAATGAAGCA
TGACACCTACTCCCATCGAGGCAGGAAGCATCCCTCTCAAGACCGAGACC
GCCGTCGTTCTCGTTCCCGCTCTCCGCGCCATTCCTCCTCATCCTCTCAC
TCCTCCCGTCAACGCAACCCTACCTCTGATAGAGAGCGAGAACGAGGAAG
GGAGAGGGATCATCACGACAAGGACCGCCCTCAGGCTGCCCCCAAGCCCG
AGTCTCAAAAGCTTAAGGCGCTCAAAGCGGTTTATGGAGATGCCTCAGCA
GTGAAGGAGGGCAAGTAA
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Synonyms
Publications