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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:919954..922245 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03510.1 vs.
Match: EWM28068.1 (crystal protein [Nannochloropsis gaditana]) HSP 1 Score: 1240.3 bits (3208), Expect = 0.000e+0 Identity = 588/696 (84.48%), Postives = 629/696 (90.37%), Query Frame = 0
Query: 15 GGGGLLGPLARMLRFSLRITGLHLLGRALPLGLLLALTCGLPMAWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPYAAPPVGELRFAAPRMLGRKWDKRQPYDATYFRAECMQGKLHNADRPKVLSEDCLFLNIWTPSTATRKKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKGVVIVSCNYRLGALGFMVSVDDGLFGNYGLQDQRFCMEWVQRNIRGFGGDPDQVTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANFLGQAVKNGVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPVVNEGPWWRAVELSGGRPREAVPITVRQPLKALEARDFVNKVPVILGSCKNEGQMFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGSKRIDYRPVLSIILNDYMFRCPTWRAAHLLQEKSVGAAVAPVYVFQFSHPTRVPGYPECHGLSCHTSELPFVFNNLDVIHKQYAMGYEDRNASTVKDLVSNVLWGLFLKADTDEKLASMMADHWAAFGRTGNPNFKGAPVHWRQWKGRRRYHLQQNPVDNDEEW---RERVTEDEGV--DLKGGSAGAARRGWKAATG---------GGGRKAGGAERGRKEGGASTTVIEPHYLELKWKPELHLATRDCTCDFWDNFNYKW 697
GG LL PL R+LRF +R TGLH LGRALPLGLLLALTCGLP+AWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPYAAPPVGELRFAAPR LGR+WDKR PYDATYFRAECMQGKLHNADRPK LSEDCLFLN+W PSTA +KKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKGVV+VSCNYRLGALGFMVSVDDG++GNYGLQDQRFC+EWVQRNI+GFGGDP VTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANFLGQAVK GVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPV+ EGPWWRA E SGGR R+AVPITVRQPLKALE+RDFVN+VPVILGSCK+EG MFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQG+KRIDYRPVLSIILNDYMFRCPTWRAAHLLQEKSV A APVYVFQFSHPTRVPG+PECHGLSCHTSELPFVFNNLDVIHKQYAM YE RNAS+VKDL+SN+LWGLFL D DE+L+S+MAD+WAAFG+TGNPN KGAP+HWR+WKGRRRYHLQQNPVD++E + R+ +D L GG+A A+ R + TG G GR A+ RK+GG STT+IEPHYL+LKWKPE+HLATRDCTCDFWD FNYKW
Sbjct: 13 GGLWLLNPLTRILRFLIRCTGLHTLGRALPLGLLLALTCGLPLAWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPYAAPPVGELRFAAPRPLGRRWDKRHPYDATYFRAECMQGKLHNADRPKALSEDCLFLNVWAPSTARKKKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKGVVLVSCNYRLGALGFMVSVDDGMYGNYGLQDQRFCLEWVQRNIKGFGGDPGSVTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANFLGQAVKRGVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPVIKEGPWWRAAESSGGRQRDAVPITVRQPLKALESRDFVNRVPVILGSCKDEGHMFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGTKRIDYRPVLSIILNDYMFRCPTWRAAHLLQEKSVDPAAAPVYVFQFSHPTRVPGFPECHGLSCHTSELPFVFNNLDVIHKQYAMAYEHRNASSVKDLISNILWGLFLNLDADERLSSVMADYWAAFGKTGNPNHKGAPLHWREWKGRRRYHLQQNPVDDEESFGGNRDGGRDDTDFLRTLMGGTASASNRDRQRYTGERKFTEGKMGNGRSR--AQSKRKKGGTSTTIIEPHYLDLKWKPEVHLATRDCTCDFWDGFNYKW 706
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03510.1 ID=NO05G03510.1|Name=NO05G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp
ATGGAGGCTTTCTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGG
CGGTTTGTTGGGCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAA
CGGGCTTGCACCTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCC
TTGACGTGCGGCCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACC
AAGCAATTGGTGGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTG
TGCAAGGCTTCACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATAT
GCAGCCCCGCCGGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGG
CAGGAAATGGGACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAG
AGTGTATGCAAGGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGC
GAAGACTGTCTGTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAA
GAAACCTGTCCCTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAG
GCGGCTCATCGAAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGG
GTGGTGATTGTGAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGT
GTCGGTGGATGACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGT
TTTGCATGGAGTGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCG
GATCAGGTGACTTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCA
GCATCTGTTGATGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGC
AGAGTAATCCGTTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTC
TTGGGGCAGGCCGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTT
GCAGGAAGAGCCCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATG
GTCTTCCCCGGAGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAAT
GAAGGGCCGTGGTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGA
GGCGGTTCCGATAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGG
ATTTTGTAAACAAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGG
CAAATGTTTGTTTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTA
TTGGGGTTTCGTATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTC
GACACTATGCAGAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAG
CGAATAGATTACCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTT
TCGTTGCCCGACGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGG
GGGCGGCGGTGGCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGG
GTGCCGGGATACCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATT
ACCCTTCGTGTTTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGG
GGTACGAGGACCGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTC
CTCTGGGGGCTCTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGAT
GATGGCGGATCATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCA
AGGGCGCGCCCGTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCAT
TTGCAGCAGAATCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGAC
GGAGGATGAGGGGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGA
GGGGCTGGAAGGCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCA
GAAAGAGGGAGGAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACA
TTACCTGGAATTAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACT
GCACGTGTGATTTTTGGGATAACTTTAACTACAAATGGTAA back to topprotein sequence of NO05G03510.1 >NO05G03510.1-protein ID=NO05G03510.1-protein|Name=NO05G03510.1|organism=Nannochloropsis oceanica|type=polypeptide|length=697bp
MEAFSRGFNSGRQDGGGGLLGPLARMLRFSLRITGLHLLGRALPLGLLLA
LTCGLPMAWAWRNFVTPSNWWTKRVIVDTESGPVQGFTQDKVSFYLGIPY
AAPPVGELRFAAPRMLGRKWDKRQPYDATYFRAECMQGKLHNADRPKVLS
EDCLFLNIWTPSTATRKKPVPVMVWLYGGAFQQGGSSKAEYYGENLAAKG
VVIVSCNYRLGALGFMVSVDDGLFGNYGLQDQRFCMEWVQRNIRGFGGDP
DQVTLFGESAGAMSVGQHLLMEGQGRLFHRVIMQSNPFSYHYRSLTVANF
LGQAVKNGVDCHDLKCLQEEPVEELLEVQDSIHGLPRSVGDFFTWGPVVN
EGPWWRAVELSGGRPREAVPITVRQPLKALEARDFVNKVPVILGSCKNEG
QMFVYNIFPFPMPKYLYWGFVFVLFRESAPKIIRHYAEVVEKEVARQGSK
RIDYRPVLSIILNDYMFRCPTWRAAHLLQEKSVGAAVAPVYVFQFSHPTR
VPGYPECHGLSCHTSELPFVFNNLDVIHKQYAMGYEDRNASTVKDLVSNV
LWGLFLKADTDEKLASMMADHWAAFGRTGNPNFKGAPVHWRQWKGRRRYH
LQQNPVDNDEEWRERVTEDEGVDLKGGSAGAARRGWKAATGGGGRKAGGA
ERGRKEGGASTTVIEPHYLELKWKPELHLATRDCTCDFWDNFNYKW* back to topmRNA from alignment at chr5:919954..922245+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03510.1 ID=NO05G03510.1|Name=NO05G03510.1|organism=Nannochloropsis oceanica|type=mRNA|length=2292bp|location=Sequence derived from alignment at chr5:919954..922245+ (Nannochloropsis oceanica)
ATGGAGGCTTTCTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGG
CGGTTTGTTGGGCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAA
CGGGCTTGCACCTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCC
TTGACGTGCGGCCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACC
AAGCAATTGGTGGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTG
TGCAAGGCTTCACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATAT
GCAGCCCCGCCGGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGG
CAGGAAATGGGACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAG
AGTGTATGCAAGGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGC
GAAGACTGTCTGTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAA
GAAACCTGTCCCTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAG
GCGGCTCATCGAAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGG
GTGGTGATTGTGAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGT
GTCGGTGGATGACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGT
TTTGCATGGAGTGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCG
GATCAGGTGACTTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCA
GCATCTGTTGATGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGC
AGAGTAATCCGTTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTC
TTGGGGCAGGCCGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTT
GCAGGAAGAGCCCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATG
GTCTTCCCCGGAGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAAT
GAAGGGCCGTGGTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGA
GGCGGTTCCGATAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGG
ATTTTGTAAACAAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGG
CAAATGTTTGTTTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTA
TTGGGGTTTCGTATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTC
GACACTATGCAGAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAG
CGAATAGATTACCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTT
TCGTTGCCCGACGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGG
GGGCGGCGGTGGCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGG
GTGCCGGGATACCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATT
ACCCTTCGTGTTTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGG
GGTACGAGGACCGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTC
CTCTGGGGGCTCTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGAT
GATGGCGGATCATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCA
AGGGCGCGCCCGTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCAT
TTGCAGCAGAATCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGAC
GGAGGATGAGGGGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGA
GGGGCTGGAAGGCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCA
GAAAGAGGGAGGAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACA
TTACCTGGAATTAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACT
GCACGTGTGATTTTTGGGATAACTTTAACTGTACGTAGAATGGTTGATTG
ATTTGATATTGAGGTTGGGGGGTTGGATGGACGTATTTGGCAGGGGTGCG
GGTGTGCGGATGAGGGAGAACTAGAGATCCCTTCATCTTGATATTTGCGA
CGGGATTTGTTCAAGATACAGGTTGCTCACTTCCTTCCCTCCTTTTCCCC
CCTCTCTCCCTCCCTCCACACCCACCCTCAGACAAATGGTAA back to topCoding sequence (CDS) from alignment at chr5:919954..922245+ >NO05G03510.1 ID=NO05G03510.1|Name=NO05G03510.1|organism=Nannochloropsis oceanica|type=CDS|length=2091bp|location=Sequence derived from alignment at chr5:919954..922245+ (Nannochloropsis oceanica)
ATGGAGGCTTTCTCCAGAGGCTTCAACAGCGGGAGACAAGATGGAGGAGG
CGGTTTGTTGGGCCCTTTGGCCCGAATGCTCCGGTTTTCCCTACGAATAA
CGGGCTTGCACCTGCTAGGGCGCGCCTTACCTCTAGGGCTACTGCTTGCC
TTGACGTGCGGCCTCCCCATGGCGTGGGCTTGGCGGAATTTTGTGACACC
AAGCAATTGGTGGACAAAACGGGTGATTGTTGATACCGAATCGGGACCTG
TGCAAGGCTTCACCCAAGACAAGGTCAGCTTCTACCTGGGAATTCCATAT
GCAGCCCCGCCGGTAGGAGAACTCCGGTTTGCGGCTCCTCGAATGCTAGG
CAGGAAATGGGACAAACGTCAACCGTACGATGCAACCTACTTCCGCGCAG
AGTGTATGCAAGGCAAATTGCATAACGCGGACCGTCCCAAGGTGCTCAGC
GAAGACTGTCTGTTTCTCAACATATGGACGCCATCGACAGCAACTAGGAA
GAAACCTGTCCCTGTCATGGTGTGGTTATACGGTGGTGCCTTCCAACAAG
GCGGCTCATCGAAAGCTGAATACTACGGAGAAAACCTTGCGGCCAAGGGG
GTGGTGATTGTGAGCTGTAACTATCGTTTGGGCGCGTTGGGTTTCATGGT
GTCGGTGGATGACGGTTTGTTTGGGAATTATGGCTTGCAGGACCAACGGT
TTTGCATGGAGTGGGTTCAGAGGAATATAAGAGGGTTTGGGGGAGACCCG
GATCAGGTGACTTTGTTTGGGGAGTCAGCCGGAGCAATGTCGGTGGGCCA
GCATCTGTTGATGGAGGGGCAGGGGAGGTTGTTCCATCGGGTCATAATGC
AGAGTAATCCGTTTTCGTACCACTACCGGAGTTTGACAGTGGCGAATTTC
TTGGGGCAGGCCGTGAAGAATGGTGTGGACTGCCATGACCTGAAGTGTTT
GCAGGAAGAGCCCGTGGAGGAGCTGTTGGAAGTGCAGGACAGCATCCATG
GTCTTCCCCGGAGTGTGGGAGACTTTTTCACCTGGGGCCCGGTGGTAAAT
GAAGGGCCGTGGTGGCGAGCGGTGGAGTTGAGTGGTGGGAGGCCGAGGGA
GGCGGTTCCGATAACGGTGCGGCAGCCGTTGAAGGCGTTGGAGGCGAGGG
ATTTTGTAAACAAAGTGCCGGTGATATTAGGTAGTTGTAAGAATGAGGGG
CAAATGTTTGTTTATAATATTTTCCCGTTTCCCATGCCCAAATATTTGTA
TTGGGGTTTCGTATTTGTTTTATTTCGGGAGAGTGCCCCGAAGATTATTC
GACACTATGCAGAGGTGGTGGAGAAGGAGGTGGCGAGGCAAGGGTCGAAG
CGAATAGATTACCGTCCTGTTTTGTCCATTATTTTGAACGATTACATGTT
TCGTTGCCCGACGTGGAGGGCGGCTCATTTACTGCAGGAGAAGAGCGTGG
GGGCGGCGGTGGCGCCTGTATATGTCTTTCAATTCTCGCATCCGACGCGG
GTGCCGGGATACCCGGAGTGTCACGGTCTGAGTTGCCACACATCGGAATT
ACCCTTCGTGTTTAACAACTTGGACGTGATTCACAAGCAGTACGCAATGG
GGTACGAGGACCGGAACGCTTCGACGGTCAAGGATTTGGTGTCGAATGTC
CTCTGGGGGCTCTTTCTCAAGGCGGACACGGACGAAAAACTCGCGTCGAT
GATGGCGGATCATTGGGCGGCGTTCGGCAGGACGGGCAATCCGAACTTCA
AGGGCGCGCCCGTGCATTGGCGGCAGTGGAAGGGAAGAAGACGGTATCAT
TTGCAGCAGAATCCGGTGGACAATGATGAGGAGTGGAGGGAGAGAGTGAC
GGAGGATGAGGGGGTAGATTTGAAGGGGGGATCGGCGGGCGCGGCGAGGA
GGGGCTGGAAGGCGGCGACGGGGGGGGGAGGGAGAAAAGCAGGAGGAGCA
GAAAGAGGGAGGAAGGAGGGGGGAGCATCCACCACGGTGATAGAGCCACA
TTACCTGGAATTAAAGTGGAAACCGGAGTTGCACTTGGCGACCCGGGACT
GCACGTGTGATTTTTGGGATAACTTTAACTACAAATGGTAA back to top
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