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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:917890..921875 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03500.1 vs.
Match: EWM28050.1 (hypothetical protein Naga_100044g13 [Nannochloropsis gaditana]) HSP 1 Score: 213.8 bits (543), Expect = 6.800e-52 Identity = 116/235 (49.36%), Postives = 157/235 (66.81%), Query Frame = 0
Query: 44 LSTINFLLLVLLQHLMAQLSRDSFLSS----QILKREPWELRHRSLRGGNMLVPTTSNTNGGQVIGGVPWPPQPGPLSSPATHAFYAQQSHGLLSAALFGQANRDNKIQDRLYNHMPLYAKLQAQAEDPATVASMQSGLRTPVYQDLQTQVADPSYKARLQTQMYRAAPRYVRMESYIQDPSYVTDMQQRLYRGIFRPGPDNPPRISAIATAEEMMPAKDVGKQSIAL-LPSHVP 274
L++ LLL+L++ + ++ L++ + ++ P +LR R LRG VP+TSNTNGGQ+IGGVPWP Q + SPA A YAQQ + LL+A F N N IQ ++Y+ M LYAKLQA+AEDP VASMQ+G+ +PVYQDL+ QVADPS+ RLQ +YRAAPRY + + +QDPSY T++QQ++YRG F PGPD P R+SA ATA + P V + + + HVP
Sbjct: 2 LTSFGLLLLLLVKAIQCHKGEETSLANFSFLRNVENTPADLRRRFLRGTGNFVPSTSNTNGGQIIGGVPWPSQSDRVPSPADRAKYAQQVNELLNANYFVHENSFNSIQQKIYDRMALYAKLQARAEDPRVVASMQTGISSPVYQDLEDQVADPSFLTRLQAYLYRAAPRYTQTMARVQDPSYGTELQQKMYRGDFGPGPDAPARLSAKATAVQTAPRPPVKRNKLNYPIRPHVP 236
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03500.1 ID=NO05G03500.1|Name=NO05G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3897bp
CCCGTCGCCGCCTTCCAGCCCCTCCTCGCCGCGCCCGCCGATCCCCCCTT
CAAATCTACCCCCTCATCCTCCGTCACTCTCTCCCTCCACTCCTCATCAT
TGTCCACCGGATTCTGCTGCAAATGATACCGTCTTCTTCCCTTCCACTGC
CGCCAATGCACGGGCGCGCCCTTGAAGTTCGGATTGCCCGTCCTGCCGAA
CGCCGCCCAATGATCCGCCATCATCGACGCGAGTTTTTCGTCCGTGTCCG
CCTTGAGAAAGAGCCCCCAGAGGACATTCGACACCAAATCCTTGACCGTC
GAAGCGTTCCGGTCCTCGTACCCCATTGCGTACTGCTTGTGAATCACGTC
CAAGTTGTTAAACACGAAGGGTAATTCCGATGTGTGGCAACTCAGACCGT
GACACTCCGGGTATCCCGGCACCCGCGTCGGATGCGAGAATTGAAAGACA
TATACAGGCGCCACCGCCGCCCCCACGCTCTTCTCCTGCAGTAAATGAGC
CGCCCTCCACGTCGGGCAACGAAACATGTAATCGTTCAAAATAATGGACA
AAACAGGACGGTAATCTATTCGCTTCGACCCTTGCCTCGCCACCTCCTTC
TCCACCACCTCTGCATAGTGTCGAATAATCTTCGGGGCACTCTCCCGAAA
TAAAACAAATACGAAACCCCAATACAAATATTTGGGCATGGGAAACGGGA
AAATATTATAAACAAACATTTGCCCCTCATTCTTACAACTACCTAATATC
ACCGGCACTTTGTTTACAAAATCCCTCGCCTCCAACGCCTTCAACGGCTG
CCGCACCGTTATCGGAACCGCCTCCCTCGGCCTCCCACCACTCAACTCCA
CCGCTCGCCACCACGGCCCTTCATTTACCACCGGGCCCCAGGTGAAAAAG
TCTCCCACACTCCGGGGAAGACCATGGATGCTGTCCTGCACTTCCAACAG
CTCCTCCACGGGCTCTTCCTGCAAACACTTCAGGTCATGGCAGTCCACAC
CATTCTTCACGGCCTGCCCCAAGAAATTCGCCACTGTCAAACTCCGGTAG
TGGTACGAAAACGGATTACTCTGCATTATGACCCGATGGAACAACCTCCC
CTGCCCCTCCATCAACAGATGCTGGCCCACCGACATTGCTCCGGCTGACT
CCCCAAACAAAGTCACCTGATCCGGGTCTCCCCCAAACCCTCTTATATTC
CTCTGAACCCACTCCATGCAAAACCGTTGGTCCTGCAAGCCATAATTCCC
AAACAAACCGTCATCCACCGACACCATGAAACCCAACGCGCCCAAACGAT
AGTTACAGCTCACAATCACCACCCCCTTGGCCGCAAGGTTTTCTCCGTAG
TATTCAGCTTTCGATGAGCCGCCTTGTTGGAAGGCACCACCGTATAACCA
CACCATGACAGGGACAGGTTTCTTCCTAGTTGCTGTCGATGGCGTCCATA
TGTTGAGAAACAGACAGTCTTCGCTGAGCACCTTGGGACGGTCCGCGTTA
TGCAATTTGCCTTGCATACACTCTGCGCGGAAGTAGGTTGCATCGTACGG
TTGACGTTTGTCCCATTTCCTGCCTAGCATTCGAGGAGCCGCAAACCGGA
GTTCTCCTACCGGCGGGGCTGCATATGGAATTCCCAGGTAGAAGCTGACC
TTGTCTTGGGTGAAGCCTTGCACAGGTCCCGATTCGGTATCAACAATCAC
CCGTTTTGTCCACCAATTGCTTGGTGTCACAAAATTCCGCCAAGCCCACG
CCATGGGGAGGCCGCACGTCAAGGCAAGCAGTAGCCCTAGAGGTAAGGCG
CGCCCTAGCAGGTGCAAGCCCGTTATTCGTAGGGAAAACCGGAGCATTCG
GGCCAAAGGGCCCAACAAACCGCCTCCTCCATCTTGTCTCCCGCTGTTGA
AGCCTCTGGAGAAAGCCTCCATAATGATGGCTTGGCGTGGCTTTTCCACG
ACCACCTCTGCTCCCCTCCTGCTTCCTTCAACTCAATTAATGTCAAGCGA
GAGGCGGGGACCTGGGGCCGGCCACCTGCAACTTGTGTGCGCCGACGACG
CTTGACAGCAAGAAATACCTCCACGTTGTGCCTGTGGCGCTGTGCGTGCT
TGTGGCTTTTGGGGTGCATAGCATGTAGGGACAGCAAGATGAGAGAGATG
CATGGGGTGAAGCTTCTATGGAGAGGAGCAGGCGTCCTCCTTTTCCCTGT
TTCTCTGTTCGAGCCTTCAATGCGAGCAAGTGGCTTCAGAATAGCAGGCA
TCACTATGTGCGTTTTCCAACGCGTCCTTAATTGTTGCTGGGTGTGCGAT
TATGGCGTGAATGTAAGGCCATTGCCGCCAGAATGGACTTGCCGGGTATT
CTGGCATCTATTGCGTACGCGGCTTACGCCGTCGAAGCGTCGGGTTGTGG
AACACAACCCGATGAGACTGGGATGAATCAACTCCCTTTTGTTATATTGT
ATATTCAATTCATATGTAGATATATCGATTCTCTGTGAGACTTAATAATT
ACATACGAACTTTTAACACTATAGGTGCAGCGGATCGATCTGTATTCCAC
ATACATACCATATCACCCCTCCTTCTCGATCTCATTGCCGAAGTATCTAC
ACCCATGCCGATGATCTCTTCGCCTACACCTCCGTCGCTCTCCCATTCTT
GGTCCCCTCCGCTCACCCCTTCTCCCTCCCCAACTACCACCACTGCTCGT
TCCTTCCCGCGGCATGCTGTATTCCTGATGACGCTCTCCACCATCAATTT
CTTGCTCCTAGTCCTACTGCAGCACCTAATGGCCCAATTATCGAGAGATT
CATTCTTATCAAGCCAAATATTGAAGAGAGAGCCTTGGGAGTTGAGGCAT
CGCTCCCTTCGTGGCGGCAACATGCTCGTCCCCACCACCAGTAATACCAA
CGGCGGGCAAGTCATTGGAGGGGTGCCGTGGCCACCACAGCCTGGCCCCC
TCAGCAGTCCAGCCACCCACGCATTTTATGCTCAACAGTCCCATGGCCTC
TTGAGTGCGGCTCTCTTCGGGCAAGCAAACCGCGACAACAAAATTCAGGA
CAGACTCTACAACCACATGCCGCTTTATGCCAAGCTACAAGCGCAAGCCG
AAGACCCTGCGACAGTTGCAAGCATGCAGTCCGGCCTCCGTACCCCTGTC
TATCAGGACTTGCAGACCCAGGTCGCAGACCCAAGCTACAAAGCCCGTCT
TCAGACACAAATGTACAGAGCTGCACCTCGCTATGTCCGCATGGAGTCTT
ACATCCAAGACCCTTCCTACGTCACCGATATGCAACAGCGGCTTTACCGA
GGCATCTTTCGCCCAGGCCCTGACAACCCTCCTCGGATAAGCGCAATCGC
GACTGCAGAAGAGATGATGCCGGCCAAAGACGTGGGGAAACAGTCAATAG
CACTCTTGCCCTCACATGTGCCTTGAAGTGTCATCGAAAAGAGGGTACTT
TGTAATTTGCGGTTCGCCCATCATAGGCCTGACCGGTTTCCCTGCACTTG
GGTCACTTAGAAGTAATGAAAATTGTCATGCTATTCATGACTATGGCAAA
TGTTGAGTCTCAAATATCCGTATCATGCTCTGTATCAATGTATAAAAAGG
AGTTTTGTTATACCCGCTCCCTGTCTTTAGACAGATCGGTCAGGCTTGGA
ACGGAAGGAGGCTTGGGCAACATGGACCGCTTGCTGACTGAGCTTTGTGC
TTGAAATGGTGAACGCTCAAGTAACGCCGTAAGACCTCGTTAGATTATTT
GAAGTTGCATAGAGTGTCCACAAGCACTGATAGTCTACGTATACTCCCCC
GTCAACCGATCAATCTCCCGCTGCAATGCCGTCTTCTCCTTGGCTTGCTG
CGGTACAAGAAACACCAGCGTGATTTTTTTGTGATCAGTTGATCGAG back to topprotein sequence of NO05G03500.1 >NO05G03500.1-protein ID=NO05G03500.1-protein|Name=NO05G03500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=274bp
MPMISSPTPPSLSHSWSPPLTPSPSPTTTTARSFPRHAVFLMTLSTINFL
LLVLLQHLMAQLSRDSFLSSQILKREPWELRHRSLRGGNMLVPTTSNTNG
GQVIGGVPWPPQPGPLSSPATHAFYAQQSHGLLSAALFGQANRDNKIQDR
LYNHMPLYAKLQAQAEDPATVASMQSGLRTPVYQDLQTQVADPSYKARLQ
TQMYRAAPRYVRMESYIQDPSYVTDMQQRLYRGIFRPGPDNPPRISAIAT
AEEMMPAKDVGKQSIALLPSHVP* back to topmRNA from alignment at chr5:917890..921875- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03500.1 ID=NO05G03500.1|Name=NO05G03500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3986bp|location=Sequence derived from alignment at chr5:917890..921875- (Nannochloropsis oceanica)
CCCGTCGCCGCCTTCCAGCCCCTCCTCGCCGCGCCCGCCGATCCCCCCTT
CAAATCTACCCCCTCATCCTCCGTCACTCTCTCCCTCCACTCCTCATCAT
TGTCCACCGGATTCTGCTGCAAATGATACCGTCTTCTTCCCTTCCACTGC
CGCCAATGCACGGGCGCGCCCTTGAAGTTCGGATTGCCCGTCCTGCCGAA
CGCCGCCCAATGATCCGCCATCATCGACGCGAGTTTTTCGTCCGTGTCCG
CCTTGAGAAAGAGCCCCCAGAGGACATTCGACACCAAATCCTTGACCGTC
GAAGCGTTCCGGTCCTCGTACCCCATTGCGTACTGCTTGTGAATCACGTC
CAAGTTGTTAAACACGAAGGGTAATTCCGATGTGTGGCAACTCAGACCGT
GACACTCCGGGTATCCCGGCACCCGCGTCGGATGCGAGAATTGAAAGACA
TATACAGGCGCCACCGCCGCCCCCACGCTCTTCTCCTGCAGTAAATGAGC
CGCCCTCCACGTCGGGCAACGAAACATGTAATCGTTCAAAATAATGGACA
AAACAGGACGGTAATCTATTCGCTTCGACCCTTGCCTCGCCACCTCCTTC
TCCACCACCTCTGCATAGTGTCGAATAATCTTCGGGGCACTCTCCCGAAA
TAAAACAAATACGAAACCCCAATACAAATATTTGGGCATGGGAAACGGGA
AAATATTATAAACAAACATTTGCCCCTCATTCTTACAACTACCTAATATC
ACCGGCACTTTGTTTACAAAATCCCTCGCCTCCAACGCCTTCAACGGCTG
CCGCACCGTTATCGGAACCGCCTCCCTCGGCCTCCCACCACTCAACTCCA
CCGCTCGCCACCACGGCCCTTCATTTACCACCGGGCCCCAGGTGAAAAAG
TCTCCCACACTCCGGGGAAGACCATGGATGCTGTCCTGCACTTCCAACAG
CTCCTCCACGGGCTCTTCCTGCAAACACTTCAGGTCATGGCAGTCCACAC
CATTCTTCACGGCCTGCCCCAAGAAATTCGCCACTGTCAAACTCCGGTAG
TGGTACGAAAACGGATTACTCTGCATTATGACCCGATGGAACAACCTCCC
CTGCCCCTCCATCAACAGATGCTGGCCCACCGACATTGCTCCGGCTGACT
CCCCAAACAAAGTCACCTGATCCGGGTCTCCCCCAAACCCTCTTATATTC
CTCTGAACCCACTCCATGCAAAACCGTTGGTCCTGCAAGCCATAATTCCC
AAACAAACCGTCATCCACCGACACCATGAAACCCAACGCGCCCAAACGAT
AGTTACAGCTCACAATCACCACCCCCTTGGCCGCAAGGTTTTCTCCGTAG
TATTCAGCTTTCGATGAGCCGCCTTGTTGGAAGGCACCACCGTATAACCA
CACCATGACAGGGACAGGTTTCTTCCTAGTTGCTGTCGATGGCGTCCATA
TGTTGAGAAACAGACAGTCTTCGCTGAGCACCTTGGGACGGTCCGCGTTA
TGCAATTTGCCTTGCATACACTCTGCGCGGAAGTAGGTTGCATCGTACGG
TTGACGTTTGTCCCATTTCCTGCCTAGCATTCGAGGAGCCGCAAACCGGA
GTTCTCCTACCGGCGGGGCTGCATATGGAATTCCCAGGTAGAAGCTGACC
TTGTCTTGGGTGAAGCCTTGCACAGGTCCCGATTCGGTATCAACAATCAC
CCGTTTTGTCCACCAATTGCTTGGTGTCACAAAATTCCGCCAAGCCCACG
CCATGGGGAGGCCGCACGTCAAGGCAAGCAGTAGCCCTAGAGGTAAGGCG
CGCCCTAGCAGGTGCAAGCCCGTTATTCGTAGGGAAAACCGGAGCATTCG
GGCCAAAGGGCCCAACAAACCGCCTCCTCCATCTTGTCTCCCGCTGTTGA
AGCCTCTGGAGAAAGCCTCCATAATGATGGCTTGGCGTGGCTTTTCCACG
ACCACCTCTGCTCCCCTCCTGCTTCCTTCAACTCAATTAATGTCAAGCGA
GAGGCGGGGACCTGGGGCCGGCCACCTGCAACTTGTGTGCGCCGACGACG
CTTGACAGCAAGAAATACCTCCACGTTGTGCCTGTGGCGCTGTGCGTGCT
TGTGGCTTTTGGGGTGCATAGCATGTAGGGACAGCAAGATGAGAGAGATG
CATGGGGTGAAGCTTCTATGGAGAGGAGCAGGCGTCCTCCTTTTCCCTGT
TTCTCTGTTCGAGCCTTCAATGCGAGCAAGTGGCTTCAGAATAGCAGGCA
TCACTATGTGCGTTTTCCAACGCGTCCTTAATTGTTGCTGGGTGTGCGAT
TATGGCGTGAATGTAAGGCCATTGCCGCCAGAATGGACTTGCCGGGTATT
CTGGCATCTATTGCGTACGCGGCTTACGCCGTCGAAGCGTCGGGTTGTGG
AACACAACCCGATGAGACTGGGATGAATCAACTCCCTTTTGTTATATTGT
ATATTCAATTCATATGTAGATATATCGATTCTCTGTGAGACTTAATAATT
ACATACGAACTTTTAACACTATAGGTGCAGCGGATCGATCTGTATTCCAC
ATACATACCATATCACCCCTCCTTCTCGATCTCATTGCCGAAGTATCTAC
ACCCATGCCGATGATCTCTTCGCCTACACCTCCGTCGCTCTCCCATTCTT
GGTCCCCTCCGCTCACCCCTTCTCCCTCCCCAACTACCACCACTGCTCGT
TCCTTCCCGCGGCATGCTGTATTCCTGATGACGCTCTCCACCATCAATTT
CTTGCTCCTAGTCCTACTGCAGCACCTAATGGCCCAATTATCGAGAGATT
CATTCTTATCAAGCCAAATATTGAAGAGAGAGCCTTGGGAGTTGAGGCAT
CGCTCCCTTCGTGGCGGCAACATGCTCGTCCCCACCACCAGTAATACCAA
CGGCGGGCAAGTCATTGGAGGGGTGCCGTGGCCACCACAGCCTGGCCCCC
TCAGCAGTCCAGCCACCCACGCATTTTATGCTCAACAGTCCCATGGCCTC
TTGAGTGCGGCTCTCTTCGGGGTACGTACTGCTTGTGAGGGAGTTTCAAA
CACTTTGTGACACAACGTTTCTAGTTCTCTTTCCCCATCAACTCTCACAC
ACAACCCTAGCAAGCAAACCGCGACAACAAAATTCAGGACAGACTCTACA
ACCACATGCCGCTTTATGCCAAGCTACAAGCGCAAGCCGAAGACCCTGCG
ACAGTTGCAAGCATGCAGTCCGGCCTCCGTACCCCTGTCTATCAGGACTT
GCAGACCCAGGTCGCAGACCCAAGCTACAAAGCCCGTCTTCAGACACAAA
TGTACAGAGCTGCACCTCGCTATGTCCGCATGGAGTCTTACATCCAAGAC
CCTTCCTACGTCACCGATATGCAACAGCGGCTTTACCGAGGCATCTTTCG
CCCAGGCCCTGACAACCCTCCTCGGATAAGCGCAATCGCGACTGCAGAAG
AGATGATGCCGGCCAAAGACGTGGGGAAACAGTCAATAGCACTCTTGCCC
TCACATGTGCCTTGAAGTGTCATCGAAAAGAGGGTACTTTGTAATTTGCG
GTTCGCCCATCATAGGCCTGACCGGTTTCCCTGCACTTGGGTCACTTAGA
AGTAATGAAAATTGTCATGCTATTCATGACTATGGCAAATGTTGAGTCTC
AAATATCCGTATCATGCTCTGTATCAATGTATAAAAAGGAGTTTTGTTAT
ACCCGCTCCCTGTCTTTAGACAGATCGGTCAGGCTTGGAACGGAAGGAGG
CTTGGGCAACATGGACCGCTTGCTGACTGAGCTTTGTGCTTGAAATGGTG
AACGCTCAAGTAACGCCGTAAGACCTCGTTAGATTATTTGAAGTTGCATA
GAGTGTCCACAAGCACTGATAGTCTACGTATACTCCCCCGTCAACCGATC
AATCTCCCGCTGCAATGCCGTCTTCTCCTTGGCTTGCTGCGGTACAAGAA
ACACCAGCGTGATTTTTTTGTGATCAGTTGATCGAG back to topCoding sequence (CDS) from alignment at chr5:917890..921875- >NO05G03500.1 ID=NO05G03500.1|Name=NO05G03500.1|organism=Nannochloropsis oceanica|type=CDS|length=822bp|location=Sequence derived from alignment at chr5:917890..921875- (Nannochloropsis oceanica)
ATGCCGATGATCTCTTCGCCTACACCTCCGTCGCTCTCCCATTCTTGGTC
CCCTCCGCTCACCCCTTCTCCCTCCCCAACTACCACCACTGCTCGTTCCT
TCCCGCGGCATGCTGTATTCCTGATGACGCTCTCCACCATCAATTTCTTG
CTCCTAGTCCTACTGCAGCACCTAATGGCCCAATTATCGAGAGATTCATT
CTTATCAAGCCAAATATTGAAGAGAGAGCCTTGGGAGTTGAGGCATCGCT
CCCTTCGTGGCGGCAACATGCTCGTCCCCACCACCAGTAATACCAACGGC
GGGCAAGTCATTGGAGGGGTGCCGTGGCCACCACAGCCTGGCCCCCTCAG
CAGTCCAGCCACCCACGCATTTTATGCTCAACAGTCCCATGGCCTCTTGA
GTGCGGCTCTCTTCGGGCAAGCAAACCGCGACAACAAAATTCAGGACAGA
CTCTACAACCACATGCCGCTTTATGCCAAGCTACAAGCGCAAGCCGAAGA
CCCTGCGACAGTTGCAAGCATGCAGTCCGGCCTCCGTACCCCTGTCTATC
AGGACTTGCAGACCCAGGTCGCAGACCCAAGCTACAAAGCCCGTCTTCAG
ACACAAATGTACAGAGCTGCACCTCGCTATGTCCGCATGGAGTCTTACAT
CCAAGACCCTTCCTACGTCACCGATATGCAACAGCGGCTTTACCGAGGCA
TCTTTCGCCCAGGCCCTGACAACCCTCCTCGGATAAGCGCAATCGCGACT
GCAGAAGAGATGATGCCGGCCAAAGACGTGGGGAAACAGTCAATAGCACT
CTTGCCCTCACATGTGCCTTGA back to top
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