NO05G03470.1, NO05G03470.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03470.1
Unique NameNO05G03470.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1581
Alignment locationchr5:912078..913658 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:912078..913658 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03470.1 vs.
Match: EWM28047.1 (tata-box binding protein [Nannochloropsis gaditana])

HSP 1 Score: 370.5 bits (950), Expect = 4.600e-99
Identity = 201/256 (78.52%), Postives = 216/256 (84.38%), Query Frame = 0 
Query:    1 MASQMTSGGGFGEISPLVRGSSGAAGGGAGGESSIGPGSAAGGPSIETVRFVNSIKLTNVVATVNLDCKPELKSIALGARNAEYNPRRFPAVIMHIKDPKSAALIFSSGKMVVTGTRSEEDSLRAAQKYTSIMRRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTKRDMDAALEKLHPILLEYRKLPMAPSMVVVGSGE----EGGREGEGE 253
            MAS +  GGG   +SP++R ++G   G   G          GGPS ET+RFV SIKLTNVVATVNLDCKP+LKSIALGARNAEYNPRRFPAVIMHIK+PKSAALIFSSGKMVVTGTRSE DSL+AA KYT+IM+RLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKT+RDMDAALEKLHPILLEYRK+P APS V V  G      GGR G G+
Sbjct:    1 MASPLMGGGG--GLSPIMRSNAGPPAGHMEG--------GTGGPSAETLRFVASIKLTNVVATVNLDCKPDLKSIALGARNAEYNPRRFPAVIMHIKEPKSAALIFSSGKMVVTGTRSETDSLQAAHKYTTIMKRLKCAANCTEFRVQNMTASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSGRIIITGAKTRRDMDAALEKLHPILLEYRKMPAAPSSVPVKEGAMSAGGGGRGGVGK 246
The following BLAST results are available for this feature:
BLAST of NO05G03470.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28047.14.600e-9978.52tata-box binding protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03470NO05G03470Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03470.1NO05G03470.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03470.1.cds1NO05G03470.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp
GGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGAC
AGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAAG
TTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCGG
TAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTCC
TTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTGT
CCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCACG
TCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTTG
TTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATAA
ACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGAC
GAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCAG
GCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAGC
GCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTAA
GCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTGA
AGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTTT
CCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCTT
CTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCAT
TGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGCG
GCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATAT
TGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTCT
GTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAAT
CCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAGG
GGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCGA
TTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGTG
GGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGGC
ATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATTGAGA
AGACTGTTGTTGACTGTTTGTGGGTGGGATTTGTTGAGAGTATGTAGATT
AGAAACTCTCTGATTGTCGAATAGCATATTAATTGGCGTGGATGGTGGCT
GTAGGTAGGTAAAAGTCAAAAGACAACAAAAGTAGGAGCTACTGTAGGAG
GAGGAGTTGCATTAAGCATGGGGTGGTGATGGTATGTGAAAATGTGGAGA
CAAAGTGTTCTTTTCACCCAAACGCACTGTGTAGAGGAAAAAGCAGGAAC
AAACCAGAATACAATTACAACCACAACATACAAATAATTCACCACTTTAA
AGAAACCGAACAGAGAACAGACAATGGAGGA
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protein sequence of NO05G03470.1

>NO05G03470.1-protein ID=NO05G03470.1-protein|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=polypeptide|length=288bp
MASQMTSGGGFGEISPLVRGSSGAAGGGAGGESSIGPGSAAGGPSIETVR
FVNSIKLTNVVATVNLDCKPELKSIALGARNAEYNPRRFPAVIMHIKDPK
SAALIFSSGKMVVTGTRSEEDSLRAAQKYTSIMRRLKCAANCTEFRVQNM
TASCDIGFPIRLEGLVMDQPRFCSYEPELFPGLVYRMYNPKIVLLIFVSG
RIIITGAKTKRDMDAALEKLHPILLEYRKLPMAPSMVVVGSGEEGGREGE
GEGGGALVEEGGERGNGEEEIEKTVVDCLWVGFVESM*
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mRNA from alignment at chr5:912078..913658+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=mRNA|length=1581bp|location=Sequence derived from alignment at chr5:912078..913658+ (Nannochloropsis oceanica)
GGGAGGTCAGACGGTAAGAGGAGCCAACTTTGTTTCCCCAAAAATCAGAC
AGGATAAGGCAAGCAAACACATAACTCGTGCATCAGTCTTCACGGCAAAG
TTTTCAGCGGGGCACGATGAAACGAGTAGGCAAAGCACAGAAACAAGCGG
TAGCTTCTTCTTCTCCGCTTTCGGACGAGTACGGCAGCCTTGCCCCCTCC
TTCCCATTTCGTAAACCTGACCTATCCCACTTCCTGCCTCTCACTATTGT
CCAACACCACCACTAGCACAGACGCGTCCTCCCTCTTTTCGTCGTGCACG
TCCATCAGGAGGCCGAGCCGCCGCGTTCGCGTTTTAAGTGCAACGCCTTG
TTTGAGCGTCCGCATCACCATCGATATCTCAAGCACACGTCTGCACATAA
ACGACACACCACCAGAGCCGCACCAGCACATCAATGGCAAGCCAAATGAC
GAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTTGGTGCGCGGTAGTTCAG
GCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTAGCATAGGACCCGGCAGC
GCCGCAGGTGGCCCGAGCATAGAGACAGTCCGCTTCGTAAACTCCATTAA
GCTCACCAACGTCGTGGCCACCGTGAACCTAGACTGCAAACCCGAGCTGA
AGAGCATTGCTCTGGGCGCTCGAAATGCGGAGTACAACCCTCGGCGGTTT
CCCGCTGTGATAATGCATATCAAGGATCCTAAGTCAGCGGCCCTTATCTT
CTCCTCTGGCAAAATGGTCGTGACAGGGACCCGTTCCGAAGAGGACTCAT
TGCGAGCCGCGCAGAAGTACACAAGTATCATGAGACGACTCAAGTGTGCG
GCTAATTGTACGGAATTCCGCGTGCAGAATATGACGGCTTCGTGTGATAT
TGGTTTCCCCATCCGCTTGGAGGGGTTAGTGATGGACCAGCCTCGTTTCT
GTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGGTCTACCGTATGTATAAT
CCTAAAATCGTTCTGTTGATATTTGTATCTGGGAGGATTATCATCACAGG
GGCTAAGACGAAGAGGGACATGGATGCAGCGCTGGAGAAGTTGCATCCGA
TTTTATTGGAGTACAGGAAGCTCCCTATGGCGCCTTCAATGGTGGTGGTG
GGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAAGGAGAAGGAGGGGGGGC
ATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGGTGAGGAGGAAATTGAGA
AGACTGTTGTTGACTGTTTGTGGGTGGGATTTGTTGAGAGTATGTAGATT
AGAAACTCTCTGATTGTCGAATAGCATATTAATTGGCGTGGATGGTGGCT
GTAGGTAGGTAAAAGTCAAAAGACAACAAAAGTAGGAGCTACTGTAGGAG
GAGGAGTTGCATTAAGCATGGGGTGGTGATGGTATGTGAAAATGTGGAGA
CAAAGTGTTCTTTTCACCCAAACGCACTGTGTAGAGGAAAAAGCAGGAAC
AAACCAGAATACAATTACAACCACAACATACAAATAATTCACCACTTTAA
AGAAACCGAACAGAGAACAGACAATGGAGGA
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Coding sequence (CDS) from alignment at chr5:912078..913658+

>NO05G03470.1 ID=NO05G03470.1|Name=NO05G03470.1|organism=Nannochloropsis oceanica|type=CDS|length=864bp|location=Sequence derived from alignment at chr5:912078..913658+ (Nannochloropsis oceanica)
ATGGCAAGCCAAATGACGAGCGGCGGCGGCTTCGGTGAGATCAGTCCGTT
GGTGCGCGGTAGTTCAGGCGCGGCCGGGGGCGGTGCCGGAGGAGAGAGTA
GCATAGGACCCGGCAGCGCCGCAGGTGGCCCGAGCATAGAGACAGTCCGC
TTCGTAAACTCCATTAAGCTCACCAACGTCGTGGCCACCGTGAACCTAGA
CTGCAAACCCGAGCTGAAGAGCATTGCTCTGGGCGCTCGAAATGCGGAGT
ACAACCCTCGGCGGTTTCCCGCTGTGATAATGCATATCAAGGATCCTAAG
TCAGCGGCCCTTATCTTCTCCTCTGGCAAAATGGTCGTGACAGGGACCCG
TTCCGAAGAGGACTCATTGCGAGCCGCGCAGAAGTACACAAGTATCATGA
GACGACTCAAGTGTGCGGCTAATTGTACGGAATTCCGCGTGCAGAATATG
ACGGCTTCGTGTGATATTGGTTTCCCCATCCGCTTGGAGGGGTTAGTGAT
GGACCAGCCTCGTTTCTGTTCCTATGAGCCAGAGCTCTTCCCTGGGCTGG
TCTACCGTATGTATAATCCTAAAATCGTTCTGTTGATATTTGTATCTGGG
AGGATTATCATCACAGGGGCTAAGACGAAGAGGGACATGGATGCAGCGCT
GGAGAAGTTGCATCCGATTTTATTGGAGTACAGGAAGCTCCCTATGGCGC
CTTCAATGGTGGTGGTGGGGAGTGGAGAGGAAGGAGGAAGAGAAGGAGAA
GGAGAAGGAGGGGGGGCATTGGTGGAGGAAGGGGGGGAAAGAGGAAACGG
TGAGGAGGAAATTGAGAAGACTGTTGTTGACTGTTTGTGGGTGGGATTTG
TTGAGAGTATGTAG
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Synonyms
Publications