NO05G03460.1, NO05G03460.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03460.1
Unique NameNO05G03460.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1620
Alignment locationchr5:910182..912032 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:910182..912032 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03460.1 vs.
Match: EWM28067.1 (estradiol 17-beta-dehydrogenase 12 [Nannochloropsis gaditana])

HSP 1 Score: 603.6 bits (1555), Expect = 3.900e-169
Identity = 298/345 (86.38%), Postives = 319/345 (92.46%), Query Frame = 0 
Query:    1 MALDVKEKNLIKFILKRLVPILIVSFSFASYMELWDQPVRLLGFSLLAVWLVKFLNLALYFARVKLFPRDPLSYGKWAIVTGATAGIGEAFAYELASRGMNVIIISRSMEKLEEVKKGILKETPGVEVRCIAYDYTDREGADAFFAMLSETCKSLVGGLGILVNNVGMVNALPEYMHQLDARTTYGILQVNVEGTVRTTRAVAPFLIDQRKGAIINVSSGSGNHPTPMISCYASTKAFITQFSQCLSHELREFGVDVLVVTPYYVISNQFRRKKATYIAPTAQRMVQDTLPILGYCDVAYPYWFHALCGFFVGLYWDVGGSVMAAMRRNRARIMEAAAAKKGKGE 346
            MALDVKEKNLIKFI KRL+PIL++  SFASYMELW QPVRLLGF L+A+W++K     + F RVKLFPRDPLSYGKWAIVTGATAGIGEAFAYELA+ GMNVIIISRS+ KLEEVKKGILKE+P  E+RC+AYDYTDREGA+AFF  LSETCK L GGLGILVNNVGMVNA+PEY+H LD  TTYGILQVNVEGTVRTTRA+AP LIDQRKGAIINVSSGSGNHPTPMISCYASTK+FITQFSQCLSHELREFGVDVLVVTPYYVISNQFRRKKATYIAPTAQRMVQDTLPILGYCDVA+PYWFHALCGFFVGLYWDVGGSVMAAMRRNRARI+EAAA K+GK E
Sbjct:    1 MALDVKEKNLIKFIAKRLIPILLIFCSFASYMELWAQPVRLLGFCLVAIWIIKITRRVILFLRVKLFPRDPLSYGKWAIVTGATAGIGEAFAYELAACGMNVIIISRSLNKLEEVKKGILKESPAAEIRCMAYDYTDREGAEAFFMKLSETCKHLEGGLGILVNNVGMVNAIPEYVHLLDDPTTYGILQVNVEGTVRTTRAIAPLLIDQRKGAIINVSSGSGNHPTPMISCYASTKSFITQFSQCLSHELREFGVDVLVVTPYYVISNQFRRKKATYIAPTAQRMVQDTLPILGYCDVAFPYWFHALCGFFVGLYWDVGGSVMAAMRRNRARILEAAAKKEGKKE 345
The following BLAST results are available for this feature:
BLAST of NO05G03460.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28067.13.900e-16986.38estradiol 17-beta-dehydrogenase 12 [Nannochloropsi... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03460NO05G03460Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03460.1NO05G03460.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03460.1.cds1NO05G03460.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03460.1.cds2NO05G03460.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03460.1 ID=NO05G03460.1|Name=NO05G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1620bp
ACAGGAAACCAGCCCCCGCTTCTTCTGTGCCTACTGCCTTAACATCTGCT
TTGAGAAGGAACGCGGCCACTTTTCTCCACCACCAACCGCGCACCCTCGT
TTCCACGCTTCACCCTCACCTCCTTCGATCATGGCGTTGGACGTGAAGGA
GAAGAACTTGATCAAGTTCATTTTAAAGCGCCTCGTGCCGATTCTAATTG
TCTCTTTTTCCTTTGCCTCCTACATGGAGCTGTGGGACCAACCCGTCCGA
CTGCTGGGTTTTTCCCTGTTGGCTGTCTGGCTGGTGAAATTCCTGAACCT
GGCCCTGTATTTTGCGCGTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGT
ACGGAAAGTGGGCCATTGTGACAGGTGCCACAGCAGGCATTGGTGAAGCT
TTTGCCTACGAGCTGGCTTCGCGTGGTATGAATGTTATAATTATCTCACG
TTCCATGGAAAAGCTGGAAGAGGTAAAGAAGGGCATTTTGAAAGAAACTC
CTGGGGTGGAGGTTCGGTGCATTGCCTATGACTACACGGATCGAGAAGGT
GCTGATGCCTTCTTTGCAATGTTGTCTGAGACGTGCAAGAGTTTGGTGGG
TGGTCTGGGCATTTTGGTGAATAACGTGGGGATGGTCAATGCGCTCCCGG
AATACATGCACCAATTGGACGCGCGCACCACCTATGGCATCCTTCAAGTC
AATGTCGAAGGGACCGTGCGCACGACCCGGGCAGTCGCCCCTTTCCTGAT
CGATCAGCGCAAGGGTGCTATAATCAATGTCTCATCAGGTTCGGGGAATC
ACCCGACCCCAATGATCAGCTGTTATGCGTCCACAAAGGCGTTTATCACC
CAATTTTCCCAGTGCTTGTCACATGAACTGAGAGAGTTTGGGGTGGATGT
GTTGGTGGTCACCCCTTACTATGTGATCTCCAATCAATTTCGACGGAAGA
AGGCGACCTACATCGCACCTACGGCCCAGCGGATGGTCCAAGACACTCTG
CCCATCTTGGGTTACTGCGACGTGGCTTACCCTTACTGGTTTCACGCCCT
ATGCGGGTTCTTTGTGGGGTTGTATTGGGATGTGGGAGGGTCGGTGATGG
CTGCCATGCGGAGGAATCGTGCTCGGATTATGGAGGCGGCGGCGGCCAAG
AAGGGAAAGGGGGAGTAAGATATGGAGTGGAAATCAGATAGAGATATAAC
TAGGGAGGGGTCACCGGCAGTAGCGGCGGGTGTATAAAAGGCAACGGGGA
AAGGGAGAAAAGGAAAAAAGAGAAGGATGAAAAAAGGATGGTTATGATGA
AAGCAGGGAGACAGAGATCAAGAGAGTGAGCAGACAAAGAGTAGCAAGCG
ATAGCTAGGACGATGACGATGATGATGACGGCGGACAGTCGACGGACGAG
CAGGACTGCCGCCAGCAGAGTCGCCTGTGCTCTATTTTGTTTGTGTATGT
CAGAAAGATTGTCGGATTGGGGTGGGGATAGTGTCGTGCATGTCCGTCTC
TTCTCCTCCGTCTTGTTTGACCTTACATGTGTACCATCAAAGCAGGAACA
TCGTTAGCAGCAAAATGAAAGAATAAAACGAAGGGGGAAAAGAAGTAAGG
AAGAAATTATGGCAAAAACG
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protein sequence of NO05G03460.1

>NO05G03460.1-protein ID=NO05G03460.1-protein|Name=NO05G03460.1|organism=Nannochloropsis oceanica|type=polypeptide|length=346bp
MALDVKEKNLIKFILKRLVPILIVSFSFASYMELWDQPVRLLGFSLLAVW
LVKFLNLALYFARVKLFPRDPLSYGKWAIVTGATAGIGEAFAYELASRGM
NVIIISRSMEKLEEVKKGILKETPGVEVRCIAYDYTDREGADAFFAMLSE
TCKSLVGGLGILVNNVGMVNALPEYMHQLDARTTYGILQVNVEGTVRTTR
AVAPFLIDQRKGAIINVSSGSGNHPTPMISCYASTKAFITQFSQCLSHEL
REFGVDVLVVTPYYVISNQFRRKKATYIAPTAQRMVQDTLPILGYCDVAY
PYWFHALCGFFVGLYWDVGGSVMAAMRRNRARIMEAAAAKKGKGE*
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mRNA from alignment at chr5:910182..912032-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03460.1 ID=NO05G03460.1|Name=NO05G03460.1|organism=Nannochloropsis oceanica|type=mRNA|length=1851bp|location=Sequence derived from alignment at chr5:910182..912032- (Nannochloropsis oceanica)
ACAGGAAACCAGCCCCCGCTTCTTCTGTGCCTACTGCCTTAACATCTGCT
TTGAGAAGGAACGCGGCCACTTTTCTCCACCACCAACCGCGCACCCTCGT
TTCCACGCTTCACCCTCACCTCCTTCGATCATGGCGTTGGACGTGAAGGA
GAAGAACTTGATCAAGTTCATTTTAAAGCGCCTCGTGCCGATTCTAATTG
TCTCTTTTTCCTTTGCCTCCTACATGGAGCTGTGGGACCAACCCGTCCGA
CTGCTGGGTTTTTCCCTGTTGGCTGTCTGGCTGGTGAAATTCCTGAACCT
GGCCCTGTATTTTGCGCGTGTCAAGCTTTTCCCTCGCGACCCTTTGTCGT
ACGGAAAGTGGGCCATTGTGACAGGTGCCACAGCAGGCATTGGTGAAGCT
TTTGCCTACGAGCTGGCTTCGCGTGGTATGAATGTTATAATTATCTCACG
TTCCATGGAAAAGCTGGAAGAGGTAAAGAAGGGCATTTTGAAAGAAACTC
CTGGGGTGGAGGTTCGGTGCATTGCCTATGACTACACGGATCGAGAAGGT
GCTGATGCCTTCTTTGCAATGTTGTCTGAGACGTGCAAGAGTTTGGTGGG
TGGTCTGGGCATTTTGGTGAATAACGTGGGGATGGTCAATGCGGTAAGTC
CCGTGGGAGGAGCAGGAGGGATGAAGGGAGGGGGATGGAGAGCGGAGGGA
GTCTGTATGGCGCCTCATATTTGGGGCATGCGGATATCCATCCCATTCCG
GCCAATGCCCACGTTTGCTTTAGTCATTCGTTCCACGCACACGCAGTGAG
CCAAGCTTTTAACCCTTTTTCCCTCCCTTCCTTTCCCATCCTACATACCG
TCCCTCCCCATCTCGTTTCCCTAGCTCCCGGAATACATGCACCAATTGGA
CGCGCGCACCACCTATGGCATCCTTCAAGTCAATGTCGAAGGGACCGTGC
GCACGACCCGGGCAGTCGCCCCTTTCCTGATCGATCAGCGCAAGGGTGCT
ATAATCAATGTCTCATCAGGTTCGGGGAATCACCCGACCCCAATGATCAG
CTGTTATGCGTCCACAAAGGCGTTTATCACCCAATTTTCCCAGTGCTTGT
CACATGAACTGAGAGAGTTTGGGGTGGATGTGTTGGTGGTCACCCCTTAC
TATGTGATCTCCAATCAATTTCGACGGAAGAAGGCGACCTACATCGCACC
TACGGCCCAGCGGATGGTCCAAGACACTCTGCCCATCTTGGGTTACTGCG
ACGTGGCTTACCCTTACTGGTTTCACGCCCTATGCGGGTTCTTTGTGGGG
TTGTATTGGGATGTGGGAGGGTCGGTGATGGCTGCCATGCGGAGGAATCG
TGCTCGGATTATGGAGGCGGCGGCGGCCAAGAAGGGAAAGGGGGAGTAAG
ATATGGAGTGGAAATCAGATAGAGATATAACTAGGGAGGGGTCACCGGCA
GTAGCGGCGGGTGTATAAAAGGCAACGGGGAAAGGGAGAAAAGGAAAAAA
GAGAAGGATGAAAAAAGGATGGTTATGATGAAAGCAGGGAGACAGAGATC
AAGAGAGTGAGCAGACAAAGAGTAGCAAGCGATAGCTAGGACGATGACGA
TGATGATGACGGCGGACAGTCGACGGACGAGCAGGACTGCCGCCAGCAGA
GTCGCCTGTGCTCTATTTTGTTTGTGTATGTCAGAAAGATTGTCGGATTG
GGGTGGGGATAGTGTCGTGCATGTCCGTCTCTTCTCCTCCGTCTTGTTTG
ACCTTACATGTGTACCATCAAAGCAGGAACATCGTTAGCAGCAAAATGAA
AGAATAAAACGAAGGGGGAAAAGAAGTAAGGAAGAAATTATGGCAAAAAC
G
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Coding sequence (CDS) from alignment at chr5:910182..912032-

>NO05G03460.1 ID=NO05G03460.1|Name=NO05G03460.1|organism=Nannochloropsis oceanica|type=CDS|length=1038bp|location=Sequence derived from alignment at chr5:910182..912032- (Nannochloropsis oceanica)
ATGGCGTTGGACGTGAAGGAGAAGAACTTGATCAAGTTCATTTTAAAGCG
CCTCGTGCCGATTCTAATTGTCTCTTTTTCCTTTGCCTCCTACATGGAGC
TGTGGGACCAACCCGTCCGACTGCTGGGTTTTTCCCTGTTGGCTGTCTGG
CTGGTGAAATTCCTGAACCTGGCCCTGTATTTTGCGCGTGTCAAGCTTTT
CCCTCGCGACCCTTTGTCGTACGGAAAGTGGGCCATTGTGACAGGTGCCA
CAGCAGGCATTGGTGAAGCTTTTGCCTACGAGCTGGCTTCGCGTGGTATG
AATGTTATAATTATCTCACGTTCCATGGAAAAGCTGGAAGAGGTAAAGAA
GGGCATTTTGAAAGAAACTCCTGGGGTGGAGGTTCGGTGCATTGCCTATG
ACTACACGGATCGAGAAGGTGCTGATGCCTTCTTTGCAATGTTGTCTGAG
ACGTGCAAGAGTTTGGTGGGTGGTCTGGGCATTTTGGTGAATAACGTGGG
GATGGTCAATGCGCTCCCGGAATACATGCACCAATTGGACGCGCGCACCA
CCTATGGCATCCTTCAAGTCAATGTCGAAGGGACCGTGCGCACGACCCGG
GCAGTCGCCCCTTTCCTGATCGATCAGCGCAAGGGTGCTATAATCAATGT
CTCATCAGGTTCGGGGAATCACCCGACCCCAATGATCAGCTGTTATGCGT
CCACAAAGGCGTTTATCACCCAATTTTCCCAGTGCTTGTCACATGAACTG
AGAGAGTTTGGGGTGGATGTGTTGGTGGTCACCCCTTACTATGTGATCTC
CAATCAATTTCGACGGAAGAAGGCGACCTACATCGCACCTACGGCCCAGC
GGATGGTCCAAGACACTCTGCCCATCTTGGGTTACTGCGACGTGGCTTAC
CCTTACTGGTTTCACGCCCTATGCGGGTTCTTTGTGGGGTTGTATTGGGA
TGTGGGAGGGTCGGTGATGGCTGCCATGCGGAGGAATCGTGCTCGGATTA
TGGAGGCGGCGGCGGCCAAGAAGGGAAAGGGGGAGTAA
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Synonyms
Publications