NO05G03410.1, NO05G03410.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03410.1
Unique NameNO05G03410.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1412
Alignment locationchr5:899104..900809 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:899104..900809 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03410.1 vs.
Match: EWM28072.1 (hypothetical protein Naga_100044g22 [Nannochloropsis gaditana])

HSP 1 Score: 412.5 bits (1059), Expect = 1.200e-111
Identity = 232/351 (66.10%), Postives = 269/351 (76.64%), Query Frame = 0 
Query:    1 MQRIIPA---------KMRRSSSFSVALSCLLALPMIAMPYASAFVR-PPTRLEAASLRRQPHT------ISKILEPSPFTRLRAPAAAAAAPTVPAGASGNGLVSRLKSMAKNVVTGLPVVALSTISGGFLAGSLHSVTGPDHLAALLPRCIGKRWYQALRIGAVWGLGHGISAIIMGMVAFFLKGRLSSYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAASFEAPAVV-TELDETTAVASSSGTLKKEASSKAIFLNGLLHGFSWDGTPTLAPALAFDSWFPVITFLCSYGLGTMLSMSTATCLIGEGTIKVGQAFDRPNIPKTLAQGSSVVAIIVGMVWTFKGLV 335
            MQRIIP          +  R +S+ + L  LL        +ASAFVR  P     A LR  P         + +L+ + + RL     +A  P  P+ ++ NGL+ R+K++AKN+VTGLP+VA STISGG LAGSLH+VTGPDHLAALLPRCIGKRWYQA+RIGAVWGLGHGISAIIMGMVAFFLKGRLS+YSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAA F+  AV+  E + +   + +SG  KK+A+ KA+FLNGLLHGFSWDGTPTLAPALAFDSW PV+TFLCSYGLGTMLSMSTAT LIGEGT+KVGQA D+PNIPK LAQGSSVVAI+VG+VWT K LV
Sbjct:   23 MQRIIPRLKASTAPTRRRMRLTSWVLTLGFLLG-------HASAFVRLRPASPVLAGLREHPFDNKFAVKSTVLLKKTYYRRL-----SATGPVAPSFSTENGLIPRVKTLAKNMVTGLPLVAFSTISGGMLAGSLHAVTGPDHLAALLPRCIGKRWYQAMRIGAVWGLGHGISAIIMGMVAFFLKGRLSTYSHSTLIPKLSLYTEVLIGVSLIIIGLLGLKEAAHFDVSAVMPLEAEGSITGSGASGAAKKKATGKAVFLNGLLHGFSWDGTPTLAPALAFDSWLPVMTFLCSYGLGTMLSMSTATSLIGEGTVKVGQALDKPNIPKKLAQGSSVVAILVGLVWTVKALV 361
The following BLAST results are available for this feature:
BLAST of NO05G03410.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28072.11.200e-11166.10hypothetical protein Naga_100044g22 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03410NO05G03410Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03410.1NO05G03410.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03410.1.cds1NO05G03410.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03410.1.cds2NO05G03410.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03410.1.cds3NO05G03410.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03410.1 ID=NO05G03410.1|Name=NO05G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1412bp
CACAGTTCATACCCGGAAAAAGCTCCAAATGCGTATATCTCGCTTTGCCG
TACTTATCAGCACATTTCAATGTACAATTCTGTATGGAAGTAAGGCAGTA
ATTCGAAGGAGTCTCCGGTTGTCGTGCTCGACCACGTCGTGCTTGAACCA
GTGGTCTTTGGTCGTTGCAAACCCCACGCAGTATCTCACTCCTAAATCAA
GCTAACCCGCCAACCTCACAGAGTAGCTTAAGTAGGATGCAAAGAATAAT
ACCGGCCAAGATGCGGCGGTCATCATCATTCTCCGTGGCGCTTTCCTGTC
TTCTAGCTCTGCCTATGATTGCCATGCCCTATGCCTCAGCCTTCGTCCGC
CCGCCTACCCGCCTGGAAGCAGCGAGCTTGAGACGGCAGCCCCACACAAT
TAGCAAAATCTTGGAACCCTCCCCCTTTACACGTTTGCGGGCCCCTGCTG
CCGCTGCCGCTGCGCCCACTGTACCTGCTGGTGCCTCGGGAAATGGTCTA
GTGTCCCGCCTCAAAAGCATGGCCAAAAACGTGGTCACGGGCCTCCCTGT
TGTAGCCCTTTCTACCATTTCGGGCGGTTTCTTGGCGGGTTCATTGCACT
CCGTCACGGGCCCTGATCATCTCGCAGCGCTCTTGCCTCGGTGCATCGGC
AAGCGATGGTATCAAGCTTTGCGCATCGGCGCGGTCTGGGGGTTAGGCCA
TGGGATCAGCGCCATTATCATGGGCATGGTTGCATTTTTCCTAAAGGGCA
GATTATCGTCTTACTCACATAGCACACTCATACCAAAGTTATCGTTGTAT
ACTGAGGTGTTAATCGGCGTAAGTTTGATTATCATTGGCTTGTTGGGCTT
GAAGGAGGCGGCAAGTTTTGAAGCGCCTGCTGTGGTGACTGAACTGGACG
AGACGACGGCCGTGGCGAGCTCGTCGGGAACACTCAAAAAGGAGGCCTCG
AGCAAGGCTATCTTCCTCAATGGGCTCCTGCATGGTTTTTCTTGGGACGG
CACGCCTACTCTGGCACCTGCATTAGCGTTTGATTCGTGGTTTCCCGTTA
TTACCTTCCTATGCTCCTATGGATTGGGCACGATGCTTTCCATGAGCACG
GCCACTTGTTTGATTGGCGAGGGCACGATCAAGGTCGGACAGGCTTTTGA
CAGACCCAACATTCCCAAGACGCTTGCGCAAGGGTCTTCGGTCGTGGCGA
TCATAGTTGGAATGGTCTGGACGTTCAAGGGGTTGGTTTAAATGCGGGTA
AAATTAAGGCAGAGGTGTGGAGCAGAGAGGGAAGGGGATATGGGAACTAG
AAAAAAAGCAAACTAGCGCAATTTTGCTTGACGGTATACATACACAATAA
CAAAACGGACGACCTGAACGAAGAATGTGACCGCAAAAGAAAGAACCGAC
ACTTAACCATGA
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protein sequence of NO05G03410.1

>NO05G03410.1-protein ID=NO05G03410.1-protein|Name=NO05G03410.1|organism=Nannochloropsis oceanica|type=polypeptide|length=335bp
MQRIIPAKMRRSSSFSVALSCLLALPMIAMPYASAFVRPPTRLEAASLRR
QPHTISKILEPSPFTRLRAPAAAAAAPTVPAGASGNGLVSRLKSMAKNVV
TGLPVVALSTISGGFLAGSLHSVTGPDHLAALLPRCIGKRWYQALRIGAV
WGLGHGISAIIMGMVAFFLKGRLSSYSHSTLIPKLSLYTEVLIGVSLIII
GLLGLKEAASFEAPAVVTELDETTAVASSSGTLKKEASSKAIFLNGLLHG
FSWDGTPTLAPALAFDSWFPVITFLCSYGLGTMLSMSTATCLIGEGTIKV
GQAFDRPNIPKTLAQGSSVVAIIVGMVWTFKGLV*
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mRNA from alignment at chr5:899104..900809-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03410.1 ID=NO05G03410.1|Name=NO05G03410.1|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at chr5:899104..900809- (Nannochloropsis oceanica)
CACAGTTCATACCCGGAAAAAGCTCCAAATGCGTATATCTCGCTTTGCCG
TACTTATCAGCACATTTCAATGTACAATTCTGTATGGAAGTAAGGCAGTA
ATTCGAAGGAGTCTCCGGTTGTCGTGCTCGACCACGTCGTGCTTGAACCA
GTGGTCTTTGGTCGTTGCAAACCCCACGCAGTATCTCACTCCTAAATCAA
GCTAACCCGCCAACCTCACAGAGTAGCTTAAGTAGGATGCAAAGAATAAT
ACCGGCCAAGATGCGGCGGTCATCATCATTCTCCGTGGCGCTTTCCTGTC
TTCTAGCTCTGCCTATGATTGCCATGCCCTATGCCTCAGCCTTCGTCCGC
CCGCCTACCCGCCTGGAAGCAGCGAGCTTGAGACGGCAGCCCCACACAAT
TAGCAAAATCTTGGAACCCTCCCCCTTTACACGTTTGCGGGCCCCTGCTG
CCGCTGCCGCTGCGCCCACTGTACCTGCTGGTGCCTCGGGAAATGGTCTA
GTGTCCCGCCTCAAAAGCATGGCCAAAAACGTGGTCACGGGCCTCCCTGT
TGTAGCCCTTTCTACCATTTCGGGCGGTTTCTTGGCGGGTTCATTGCACT
CCGTCACGGGTATGTACGGTTTCCAGGTCAATCGATAACTACCGTACATA
TTCTCCCCTGCTTTGTCTTACTCCCTTCAGTCCATCTCACTAAATACCCC
CACATAAAGGGTCATTCTAAAGAGTCGCCTTTTGCTTCGCTGTTTCCTCT
TTGTCTAACACATGACGCCCCATTACTATGTATGCACACTTAGGCCCTGA
TCATCTCGCAGCGCTCTTGCCTCGGTGCATCGGCAAGCGATGGTATCAAG
CTTTGCGCATCGGCGCGGTCTGGGGGTTAGGCCATGGGATCAGCGCCATT
ATCATGGGCATGGTTGCATTTTTCCTAAAGGGCAGATTATCGTCTTACTC
ACATAGCACACTCATACCAAAGTTATCGTTGTATACTGAGGTGTTAATCG
GCGTAAGTTTGATTATCATTGGCTTGTTGGGCTTGAAGGAGGCGGCAAGT
TTTGAAGCGCCTGCTGTGGTGACTGAACTGGACGAGACGACGGCCGTGGC
GAGCTCGTCGGGAACACTCAAAAAGGTGAGCTAAGAAAATTAAGCTGTGG
CAATGATGGTTGGACAAGGAAGGTAAATTCGAAGGGTACAATGACTGACG
GTCCTGCCTCTGGTTCTTTTTCTTAACATCAACAGGAGGCCTCGAGCAAG
GCTATCTTCCTCAATGGGCTCCTGCATGGTTTTTCTTGGGACGGCACGCC
TACTCTGGCACCTGCATTAGCGTTTGATTCGTGGTTTCCCGTTATTACCT
TCCTATGCTCCTATGGATTGGGCACGATGCTTTCCATGAGCACGGCCACT
TGTTTGATTGGCGAGGGCACGATCAAGGTCGGACAGGCTTTTGACAGACC
CAACATTCCCAAGACGCTTGCGCAAGGGTCTTCGGTCGTGGCGATCATAG
TTGGAATGGTCTGGACGTTCAAGGGGTTGGTTTAAATGCGGGTAAAATTA
AGGCAGAGGTGTGGAGCAGAGAGGGAAGGGGATATGGGAACTAGAAAAAA
AGCAAACTAGCGCAATTTTGCTTGACGGTATACATACACAATAACAAAAC
GGACGACCTGAACGAAGAATGTGACCGCAAAAGAAAGAACCGACACTTAA
CCATGA
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Coding sequence (CDS) from alignment at chr5:899104..900809-

>NO05G03410.1 ID=NO05G03410.1|Name=NO05G03410.1|organism=Nannochloropsis oceanica|type=CDS|length=1005bp|location=Sequence derived from alignment at chr5:899104..900809- (Nannochloropsis oceanica)
ATGCAAAGAATAATACCGGCCAAGATGCGGCGGTCATCATCATTCTCCGT
GGCGCTTTCCTGTCTTCTAGCTCTGCCTATGATTGCCATGCCCTATGCCT
CAGCCTTCGTCCGCCCGCCTACCCGCCTGGAAGCAGCGAGCTTGAGACGG
CAGCCCCACACAATTAGCAAAATCTTGGAACCCTCCCCCTTTACACGTTT
GCGGGCCCCTGCTGCCGCTGCCGCTGCGCCCACTGTACCTGCTGGTGCCT
CGGGAAATGGTCTAGTGTCCCGCCTCAAAAGCATGGCCAAAAACGTGGTC
ACGGGCCTCCCTGTTGTAGCCCTTTCTACCATTTCGGGCGGTTTCTTGGC
GGGTTCATTGCACTCCGTCACGGGCCCTGATCATCTCGCAGCGCTCTTGC
CTCGGTGCATCGGCAAGCGATGGTATCAAGCTTTGCGCATCGGCGCGGTC
TGGGGGTTAGGCCATGGGATCAGCGCCATTATCATGGGCATGGTTGCATT
TTTCCTAAAGGGCAGATTATCGTCTTACTCACATAGCACACTCATACCAA
AGTTATCGTTGTATACTGAGGTGTTAATCGGCGTAAGTTTGATTATCATT
GGCTTGTTGGGCTTGAAGGAGGCGGCAAGTTTTGAAGCGCCTGCTGTGGT
GACTGAACTGGACGAGACGACGGCCGTGGCGAGCTCGTCGGGAACACTCA
AAAAGGAGGCCTCGAGCAAGGCTATCTTCCTCAATGGGCTCCTGCATGGT
TTTTCTTGGGACGGCACGCCTACTCTGGCACCTGCATTAGCGTTTGATTC
GTGGTTTCCCGTTATTACCTTCCTATGCTCCTATGGATTGGGCACGATGC
TTTCCATGAGCACGGCCACTTGTTTGATTGGCGAGGGCACGATCAAGGTC
GGACAGGCTTTTGACAGACCCAACATTCCCAAGACGCTTGCGCAAGGGTC
TTCGGTCGTGGCGATCATAGTTGGAATGGTCTGGACGTTCAAGGGGTTGG
TTTAA
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Synonyms
Publications