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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:878005..880549 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03350.1 vs.
Match: EWM28058.1 (sugar phosphate exchanger 3 [Nannochloropsis gaditana]) HSP 1 Score: 542.7 bits (1397), Expect = 1.300e-150 Identity = 307/557 (55.12%), Postives = 370/557 (66.43%), Query Frame = 0
Query: 5 RPLAHLS------PWPLPTHAAVFGLTFFVWASVHAGRKSYSIIKPILVSNSWFGTDTAVKVSWADTSFFLFYAVGCGFGKISDSKDPRLVITISLLMAAALLVCFGLGDFFDIHSVVAFCLLWGMQAFAQALVWPGCIAVLGEWFPYKRRAAVMGLWCCANNIGNLLGTSVGEVAMVAAAEKRWGAVMMANALLMLMAPVLVFLHLTPLPPPGM-------------NSKRQGLAEKEREEDEVGDGQIKEEGTDWLYHQLEDNEDGVVAV-TSLGETPMV------QHDAHSLFPHANDDSSRDNSSPLVLPLEKLSHHRTHLLPPITLTRAFLTPGVLEVSLSYACLKGCAYAFTFWLPTLLSSGGWGLSTKQSNFFAMLFDFGCIAGSISIGALATWTRRPIFVYTLSILASALPTYLMGILPEGGGGELGVTGLFLVLVGFLLSAPQYLLVTSVAQDLGQSHGLKGNARAIATMTGVIDGIGSLGAAIVQVLVGNLASCSREEGEGQGGGGGEGEVET-MTTCDLPNVFNMLACGSLVGALALSRLAWREIR 535
RP H S PWPL AVF LTF VW +VHAGRKSYSI+KP+LV +WFGT+T+ K S+ DTSFFLFYA+GCGFGK++D+ DPRLVIT +LL AA LLVC L DF ++H + FCLLWG+QA QAL WPGCIAVLGEWF KRRAAVMGLWC ANN+GNLLG SVGEVA+ A ++RWGAV++ANA+LML+ P +VFLHL P PPP S+ +G E R + G+ + D +D D AV S +P+V + + +L D + SP++ P R +LPP+ L RA TPGVLEV LSYACLKG AYAF FWLPT+L+SGGWGL+ KQ+N +AMLFD G I GS+++GALA RRPI VY +SIL S LPTYL+G LP V L L+LVGF +APQYLLVTSVAQDLGQS LKG+ RAIATMTGVIDG+GSLGAA VQVLVG+LA C+ E G EG T +T+CDL V+ L + +GAL LSRL RE+R
Sbjct: 2 RPNVHASEWRRAPPWPLSNQNAVFALTFLVWVTVHAGRKSYSIVKPVLVDMAWFGTNTSTKASYPDTSFFLFYALGCGFGKVNDAMDPRLVITSALLGAALLLVCLALADFGNVHDLGIFCLLWGLQACVQALAWPGCIAVLGEWFHSKRRAAVMGLWCVANNVGNLLGASVGEVAVAVAGDERWGAVLVANAILMLVVPAVVFLHLEPFPPPPTVLDLSPTSDPCQGASREKGQKEGARTRRDWQAGRAEGREGDREAPPDKDRRDTHCAVKASDSSSPVVDDSLFSEEGSRTLLHPLLDSDDEASPSPVLTP-------RPSVLPPVGLARALCTPGVLEVGLSYACLKGGAYAFVFWLPTMLASGGWGLNAKQANAWAMLFDLGSILGSVAVGALAARVRRPIAVYFVSILGSTLPTYLLGRLPHEQQTS-RVLALLLLLVGFFSAAPQYLLVTSVAQDLGQSPDLKGSRRAIATMTGVIDGVGSLGAACVQVLVGHLAHCTSE-----ADAGVEGAARTHLTSCDLKEVYYFLTAIAFLGALMLSRLLLREVR 545
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03350.1 ID=NO05G03350.1|Name=NO05G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2545bp
GTGACGAAGAAGCCTCCGCTCGCTCTCAGGTTGGCGAGTAAGTCTGAGAA
GTCGAAGCGTCGTGGACCAACTCCACAGCGGTTGCGCCCAGCACTTGGCA
CAATATGTGAAGAGTGTATGGAGGAGATTAGTGAAAAAATCGACTCGGTT
TGGCTTCTAATCGTGCTTGCTTTTGTGGCAGTAGCAGCGTCATCGCCATT
CCTTCAACCCATGACCTCATCTACCAGTACCTGCCCCTTAAACCTGGCTC
GAAACTCACATGCCACCCACACTCCGACAGGAAGCCTCCGCACGACACGA
CGAAGACATCTGCGGGATTAGAAGTAGCGGCTGCAGAATCATTAAGCCAC
CCTACCGCACGCCGCAACTCTCCTACCCTCTTTTTTCTCCTCCGCTCTAC
CCCTTCCAATGCCGCCACCACGTCCCCTCGCACATCTCTCACCGTGGCCC
CTGCCCACCCACGCGGCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTC
TGTTCATGCGGGACGCAAGTCCTACTCCATCATCAAGCCGATACTGGTCT
CCAACAGCTGGTTCGGCACGGACACGGCTGTCAAAGTGTCGTGGGCTGAC
ACCAGCTTCTTTCTCTTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAG
TGATTCCAAAGACCCACGTCTTGTCATAACTATCTCCCTACTTATGGCCG
CTGCGTTGCTCGTCTGCTTCGGTCTAGGTGATTTTTTTGACATCCACAGT
GTTGTAGCATTTTGCCTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACT
CGTCTGGCCCGGGTGCATTGCCGTCTTGGGAGAATGGTTCCCTTACAAAC
GTCGAGCAGCCGTGATGGGCTTGTGGTGTTGTGCCAATAATATCGGGAAT
CTCCTAGGGACGAGTGTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAA
GCGATGGGGAGCTGTCATGATGGCGAATGCGTTGTTAATGCTCATGGCGC
CGGTGCTGGTATTTCTTCATCTCACGCCTTTGCCGCCGCCGGGGATGAAT
TCGAAGAGGCAAGGTTTAGCCGAAAAAGAAAGAGAGGAGGATGAGGTTGG
AGATGGACAGATAAAAGAGGAGGGAACTGATTGGCTCTATCACCAACTTG
AAGACAATGAGGACGGCGTCGTCGCAGTGACTTCATTGGGGGAAACCCCA
ATGGTGCAACACGATGCCCATTCTTTGTTTCCTCACGCCAATGACGACAG
CAGCCGCGACAACAGCAGTCCTCTCGTCCTCCCTCTAGAAAAACTGTCCC
ACCACCGCACACACCTCCTCCCACCCATCACCCTGACGCGTGCCTTCCTT
ACCCCAGGCGTTCTCGAAGTGAGTCTCTCCTACGCCTGCCTCAAAGGTTG
TGCATACGCATTCACCTTCTGGTTGCCCACCCTGCTCTCCTCCGGTGGCT
GGGGCCTCAGTACAAAGCAGTCCAACTTTTTTGCGATGCTTTTTGATTTC
GGTTGCATCGCCGGTTCGATTTCTATTGGCGCTCTCGCCACATGGACACG
CCGACCCATTTTTGTCTATACCTTGAGTATATTGGCTTCGGCATTGCCGA
CGTACCTGATGGGGATCCTCCCTGAAGGAGGAGGGGGAGAGTTGGGTGTA
ACGGGTCTGTTTCTCGTGTTGGTTGGCTTTTTGCTGTCGGCGCCGCAGTA
TTTGTTGGTGACATCGGTGGCACAGGACTTGGGGCAGAGTCATGGATTGA
AGGGGAACGCAAGGGCCATTGCGACAATGACGGGTGTGATTGATGGGATT
GGAAGTTTGGGGGCAGCGATCGTGCAGGTGTTGGTGGGGAACTTGGCGTC
GTGTAGTCGGGAGGAGGGTGAGGGGCAGGGAGGAGGAGGAGGGGAGGGCG
AGGTCGAAACGATGACGACGTGTGACTTGCCGAATGTGTTTAATATGTTG
GCGTGTGGGAGTTTGGTGGGGGCGCTGGCCTTGTCGCGGTTGGCGTGGCG
GGAAATAAGGGATGCTGGAAGGGGGAGGTAGGAGGGCTTGAGATCATGAG
GGTTTGAAGATAAGGAGTTGCAAGTAAAGTGGAGGAAGGGCGTGAAAAAT
TGTGCGAGAAAGCCCGGTGCAGGCGACTGACAGGGGTAACGAGGCTCATT
TTGACTTGGGGGTGAAGGTGTTGCCGGAGGGTGACCATCATAGGGAATCA
GTGACCGAGGTAAGAGCCGCTGTCAAAAAATGTTGTTTCCCCTTTTTGCC
TAGGTGTCGATGTACATAAAAGGGAAATAGAAAAGTGTATAAACATATTA
GTAGAAAAAGTGGAGGGGCACCGGAAACTGATTTGACGTCTTCCAACCCC
AACCAAGAGGCACATTATTCAATACACATAATGATCAAAGCACTCTACAA
TGACAACGAAGAATGTAAACCTGCACACGCATTAAATGAAGCGCATTCAA
ACCCATTCCTCGGGCATGTATTCGTTTGCGGGTACAGGTTGCACGCTATA
GTTTTAGGGTTGTAGGAAACTACATACATGGCATGGTCCAGACAG back to topprotein sequence of NO05G03350.1 >NO05G03350.1-protein ID=NO05G03350.1-protein|Name=NO05G03350.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MPPPRPLAHLSPWPLPTHAAVFGLTFFVWASVHAGRKSYSIIKPILVSNS
WFGTDTAVKVSWADTSFFLFYAVGCGFGKISDSKDPRLVITISLLMAAAL
LVCFGLGDFFDIHSVVAFCLLWGMQAFAQALVWPGCIAVLGEWFPYKRRA
AVMGLWCCANNIGNLLGTSVGEVAMVAAAEKRWGAVMMANALLMLMAPVL
VFLHLTPLPPPGMNSKRQGLAEKEREEDEVGDGQIKEEGTDWLYHQLEDN
EDGVVAVTSLGETPMVQHDAHSLFPHANDDSSRDNSSPLVLPLEKLSHHR
THLLPPITLTRAFLTPGVLEVSLSYACLKGCAYAFTFWLPTLLSSGGWGL
STKQSNFFAMLFDFGCIAGSISIGALATWTRRPIFVYTLSILASALPTYL
MGILPEGGGGELGVTGLFLVLVGFLLSAPQYLLVTSVAQDLGQSHGLKGN
ARAIATMTGVIDGIGSLGAAIVQVLVGNLASCSREEGEGQGGGGGEGEVE
TMTTCDLPNVFNMLACGSLVGALALSRLAWREIRDAGRGR* back to topmRNA from alignment at chr5:878005..880549- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03350.1 ID=NO05G03350.1|Name=NO05G03350.1|organism=Nannochloropsis oceanica|type=mRNA|length=2545bp|location=Sequence derived from alignment at chr5:878005..880549- (Nannochloropsis oceanica)
GTGACGAAGAAGCCTCCGCTCGCTCTCAGGTTGGCGAGTAAGTCTGAGAA
GTCGAAGCGTCGTGGACCAACTCCACAGCGGTTGCGCCCAGCACTTGGCA
CAATATGTGAAGAGTGTATGGAGGAGATTAGTGAAAAAATCGACTCGGTT
TGGCTTCTAATCGTGCTTGCTTTTGTGGCAGTAGCAGCGTCATCGCCATT
CCTTCAACCCATGACCTCATCTACCAGTACCTGCCCCTTAAACCTGGCTC
GAAACTCACATGCCACCCACACTCCGACAGGAAGCCTCCGCACGACACGA
CGAAGACATCTGCGGGATTAGAAGTAGCGGCTGCAGAATCATTAAGCCAC
CCTACCGCACGCCGCAACTCTCCTACCCTCTTTTTTCTCCTCCGCTCTAC
CCCTTCCAATGCCGCCACCACGTCCCCTCGCACATCTCTCACCGTGGCCC
CTGCCCACCCACGCGGCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTC
TGTTCATGCGGGACGCAAGTCCTACTCCATCATCAAGCCGATACTGGTCT
CCAACAGCTGGTTCGGCACGGACACGGCTGTCAAAGTGTCGTGGGCTGAC
ACCAGCTTCTTTCTCTTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAG
TGATTCCAAAGACCCACGTCTTGTCATAACTATCTCCCTACTTATGGCCG
CTGCGTTGCTCGTCTGCTTCGGTCTAGGTGATTTTTTTGACATCCACAGT
GTTGTAGCATTTTGCCTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACT
CGTCTGGCCCGGGTGCATTGCCGTCTTGGGAGAATGGTTCCCTTACAAAC
GTCGAGCAGCCGTGATGGGCTTGTGGTGTTGTGCCAATAATATCGGGAAT
CTCCTAGGGACGAGTGTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAA
GCGATGGGGAGCTGTCATGATGGCGAATGCGTTGTTAATGCTCATGGCGC
CGGTGCTGGTATTTCTTCATCTCACGCCTTTGCCGCCGCCGGGGATGAAT
TCGAAGAGGCAAGGTTTAGCCGAAAAAGAAAGAGAGGAGGATGAGGTTGG
AGATGGACAGATAAAAGAGGAGGGAACTGATTGGCTCTATCACCAACTTG
AAGACAATGAGGACGGCGTCGTCGCAGTGACTTCATTGGGGGAAACCCCA
ATGGTGCAACACGATGCCCATTCTTTGTTTCCTCACGCCAATGACGACAG
CAGCCGCGACAACAGCAGTCCTCTCGTCCTCCCTCTAGAAAAACTGTCCC
ACCACCGCACACACCTCCTCCCACCCATCACCCTGACGCGTGCCTTCCTT
ACCCCAGGCGTTCTCGAAGTGAGTCTCTCCTACGCCTGCCTCAAAGGTTG
TGCATACGCATTCACCTTCTGGTTGCCCACCCTGCTCTCCTCCGGTGGCT
GGGGCCTCAGTACAAAGCAGTCCAACTTTTTTGCGATGCTTTTTGATTTC
GGTTGCATCGCCGGTTCGATTTCTATTGGCGCTCTCGCCACATGGACACG
CCGACCCATTTTTGTCTATACCTTGAGTATATTGGCTTCGGCATTGCCGA
CGTACCTGATGGGGATCCTCCCTGAAGGAGGAGGGGGAGAGTTGGGTGTA
ACGGGTCTGTTTCTCGTGTTGGTTGGCTTTTTGCTGTCGGCGCCGCAGTA
TTTGTTGGTGACATCGGTGGCACAGGACTTGGGGCAGAGTCATGGATTGA
AGGGGAACGCAAGGGCCATTGCGACAATGACGGGTGTGATTGATGGGATT
GGAAGTTTGGGGGCAGCGATCGTGCAGGTGTTGGTGGGGAACTTGGCGTC
GTGTAGTCGGGAGGAGGGTGAGGGGCAGGGAGGAGGAGGAGGGGAGGGCG
AGGTCGAAACGATGACGACGTGTGACTTGCCGAATGTGTTTAATATGTTG
GCGTGTGGGAGTTTGGTGGGGGCGCTGGCCTTGTCGCGGTTGGCGTGGCG
GGAAATAAGGGATGCTGGAAGGGGGAGGTAGGAGGGCTTGAGATCATGAG
GGTTTGAAGATAAGGAGTTGCAAGTAAAGTGGAGGAAGGGCGTGAAAAAT
TGTGCGAGAAAGCCCGGTGCAGGCGACTGACAGGGGTAACGAGGCTCATT
TTGACTTGGGGGTGAAGGTGTTGCCGGAGGGTGACCATCATAGGGAATCA
GTGACCGAGGTAAGAGCCGCTGTCAAAAAATGTTGTTTCCCCTTTTTGCC
TAGGTGTCGATGTACATAAAAGGGAAATAGAAAAGTGTATAAACATATTA
GTAGAAAAAGTGGAGGGGCACCGGAAACTGATTTGACGTCTTCCAACCCC
AACCAAGAGGCACATTATTCAATACACATAATGATCAAAGCACTCTACAA
TGACAACGAAGAATGTAAACCTGCACACGCATTAAATGAAGCGCATTCAA
ACCCATTCCTCGGGCATGTATTCGTTTGCGGGTACAGGTTGCACGCTATA
GTTTTAGGGTTGTAGGAAACTACATACATGGCATGGTCCAGACAG back to topCoding sequence (CDS) from alignment at chr5:878005..880549- >NO05G03350.1 ID=NO05G03350.1|Name=NO05G03350.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr5:878005..880549- (Nannochloropsis oceanica)
ATGCCGCCACCACGTCCCCTCGCACATCTCTCACCGTGGCCCCTGCCCAC
CCACGCGGCCGTCTTTGGCCTCACCTTCTTCGTATGGGCCTCTGTTCATG
CGGGACGCAAGTCCTACTCCATCATCAAGCCGATACTGGTCTCCAACAGC
TGGTTCGGCACGGACACGGCTGTCAAAGTGTCGTGGGCTGACACCAGCTT
CTTTCTCTTTTATGCAGTTGGATGCGGCTTCGGCAAGATCAGTGATTCCA
AAGACCCACGTCTTGTCATAACTATCTCCCTACTTATGGCCGCTGCGTTG
CTCGTCTGCTTCGGTCTAGGTGATTTTTTTGACATCCACAGTGTTGTAGC
ATTTTGCCTCTTGTGGGGAATGCAAGCTTTTGCCCAAGCACTCGTCTGGC
CCGGGTGCATTGCCGTCTTGGGAGAATGGTTCCCTTACAAACGTCGAGCA
GCCGTGATGGGCTTGTGGTGTTGTGCCAATAATATCGGGAATCTCCTAGG
GACGAGTGTCGGAGAGGTGGCTATGGTGGCTGCGGCAGAAAAGCGATGGG
GAGCTGTCATGATGGCGAATGCGTTGTTAATGCTCATGGCGCCGGTGCTG
GTATTTCTTCATCTCACGCCTTTGCCGCCGCCGGGGATGAATTCGAAGAG
GCAAGGTTTAGCCGAAAAAGAAAGAGAGGAGGATGAGGTTGGAGATGGAC
AGATAAAAGAGGAGGGAACTGATTGGCTCTATCACCAACTTGAAGACAAT
GAGGACGGCGTCGTCGCAGTGACTTCATTGGGGGAAACCCCAATGGTGCA
ACACGATGCCCATTCTTTGTTTCCTCACGCCAATGACGACAGCAGCCGCG
ACAACAGCAGTCCTCTCGTCCTCCCTCTAGAAAAACTGTCCCACCACCGC
ACACACCTCCTCCCACCCATCACCCTGACGCGTGCCTTCCTTACCCCAGG
CGTTCTCGAAGTGAGTCTCTCCTACGCCTGCCTCAAAGGTTGTGCATACG
CATTCACCTTCTGGTTGCCCACCCTGCTCTCCTCCGGTGGCTGGGGCCTC
AGTACAAAGCAGTCCAACTTTTTTGCGATGCTTTTTGATTTCGGTTGCAT
CGCCGGTTCGATTTCTATTGGCGCTCTCGCCACATGGACACGCCGACCCA
TTTTTGTCTATACCTTGAGTATATTGGCTTCGGCATTGCCGACGTACCTG
ATGGGGATCCTCCCTGAAGGAGGAGGGGGAGAGTTGGGTGTAACGGGTCT
GTTTCTCGTGTTGGTTGGCTTTTTGCTGTCGGCGCCGCAGTATTTGTTGG
TGACATCGGTGGCACAGGACTTGGGGCAGAGTCATGGATTGAAGGGGAAC
GCAAGGGCCATTGCGACAATGACGGGTGTGATTGATGGGATTGGAAGTTT
GGGGGCAGCGATCGTGCAGGTGTTGGTGGGGAACTTGGCGTCGTGTAGTC
GGGAGGAGGGTGAGGGGCAGGGAGGAGGAGGAGGGGAGGGCGAGGTCGAA
ACGATGACGACGTGTGACTTGCCGAATGTGTTTAATATGTTGGCGTGTGG
GAGTTTGGTGGGGGCGCTGGCCTTGTCGCGGTTGGCGTGGCGGGAAATAA
GGGATGCTGGAAGGGGGAGGTAG back to top
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