NO05G03280.1, NO05G03280.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G03280.1
Unique Name	NO05G03280.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1911
Alignment location	chr5:851766..853676 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:851766..853676 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

The following BLAST results are available for this feature:

BLAST of NO05G03280.1 vs.

BLAST of NO05G03280.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G03280	NO05G03280	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03280.1	NO05G03280.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G03280.1.cds1	NO05G03280.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:851766..853676-
coding sequence from alignment at chr5:851766..853676-

mRNA sequence

>NO05G03280.1 ID=NO05G03280.1|Name=NO05G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp
ATGGCCAAGGTGCGCGGGGCCAGCGCTAAAGGAATCTCGCCATCTAAATC
ACCTTCCCGGCGACGCTCCCCTCGCAAGTCCGCCCTAGCAAGGGACTCGG
CAGTCACCAGAACACCCTCCCCGACCCGATCAAGACGAAAGACTCCCGGG
ATTGCGACTCCCGGGAGCGCGACAAAACGAGGTGGAGGAAGTCGGCGAAA
GGCAGCCTCTGTCCCGTCAAATAATACTTTCCATGGTGATGCTACTGCTG
GAGGAGGAGGAGTAGAAGGAGGAGGAGGAAAAGAAGGATGTGGGATAGCA
TCAATTGGTGCCACCACCAAGGAGGACCATGATGCGCATCGCTTGCGAGG
ACCGTATCTGGTCGCCCTGCTGGTAGTAGTGCTCAGCATACATGCCATTG
CCTTCGGCATAGCTTCTTCTTCCTCGCCCTCGTCTACGTCTTGGTCGTGG
GCTTCAATACGGAAGAAAGTGGGAGGATCGAAATGGGAGTCCTTGTCAAG
GCAAAACCTCAAGGTGGTCACCACTGCCGCTCCCTCTACCAATATCAATC
AGCAGCAGGAGAATGAGGAGGGGGAGAGGGAGAAGAAGGAGGAGGAACAT
CAGCAGCAGCAGCTGCCGCTCCAAAGGAAGTTTAAGAGTAAGAGTCAAGA
AGCAGAACCAGTACAAGTAAAAGAAATTGAGAATAAAGGGGAAGAGCGGG
AAGGGAATGGGAGGGTGGAGAAAAAGGTGGTGCCCGCCACGATGATGTCC
AAATCTGACATCTCGGTCGTTGAGGAGGAAGCACGAGACGCAGCCCGTGT
GGCCGAGCAGGAATCGGATGGGCAGCAGCAGCAGGTGGAGGATGTAGAGG
CGTCCGTGTCTGCCACTGAAGTGCCTTCACGAGAGCAACAGCATCAGCAC
GAGCAGCTGCACCAGCATCAGCCGCCGCAGCAACAAGAAGAAAATGCCCC
AGATTTCCGGCCTTCACCCTTGGAGCAGCCGATCGTAGGCCCATGCGTGC
AAGCAGACGTATTTGACACGTCCCAATTACCAAAACAGCAGCACGGAGAA
ATGGACGAAGAACATCACGAGGAGCATCCGGACATGGAATCGCAGCGTAG
CCCTGAAGGAGAGCCTTCTCCCACAGCCACCGACTCTTCACCGGAGCCGC
AGGTGCCGGAGCAGGATGATGAGCAGCAGCAGCAGCCTCTCACACGAGAA
GATACAGATGGTATGCCGAGGCCGCCATCATCGACACCCCGTAATCACCT
CCCCCCTACTCAAACTGCAACACCTTCATCACACCAAGAGCAGCCACAGG
GAGACAATGATGAAAACATCGCGGCTGCTACTGCTGACGCCGCTGCTGCT
GCTCCCCGAAAGTCCAACCCCAGCAGCAGCACTACTGTACCAACACCAAC
GCCCGCTGGAAACACTCGTCGTCATCACGCGAACCGCGAGCAGCGGCAGC
GGCAGCGGCAAAATCCCGTCCCTCGACCTTCCCATATACTCCGCGTGGGG
GTTTCATTAAAAGAAGGCGACAAGATGGGAAATAGGTGCTATGAACAAGG
TGTGGAAGGCTGGTGCGCGCCCGCCACACACCTCCTGCTGGACAGCAAGG
GGAGGCTAGAGCTAAGGGAGGGGTGGGGGGAGGGAGAAGAAAAGAAGTGG
GGTGCGAAGAAGCGGTTGCTCGCTTTTTCGTTCGCACGGCAGAAGAGGGT
GATGGAAGGGAGGGACGGAAGGAGAGAGGGGGGGCATGAATTGGTGCTGT
CGCCGAGGGGGGTTCTGGAGTTAAGGGGGCCGAGTGGCACATGGTTGTGG
AGGTCGAATGTGGAGGGGGAGGAGAATGAGGAGTACCAGGCGTTTGTGAG
CGATGAAGGGAGGTTAGTTGTCTATCTTGAGAACTCAATTCATTGGAAGT
CACCAACATAG

protein sequence of NO05G03280.1

>NO05G03280.1-protein ID=NO05G03280.1-protein|Name=NO05G03280.1|organism=Nannochloropsis oceanica|type=polypeptide|length=637bp
MAKVRGASAKGISPSKSPSRRRSPRKSALARDSAVTRTPSPTRSRRKTPG
IATPGSATKRGGGSRRKAASVPSNNTFHGDATAGGGGVEGGGGKEGCGIA
SIGATTKEDHDAHRLRGPYLVALLVVVLSIHAIAFGIASSSSPSSTSWSW
ASIRKKVGGSKWESLSRQNLKVVTTAAPSTNINQQQENEEGEREKKEEEH
QQQQLPLQRKFKSKSQEAEPVQVKEIENKGEEREGNGRVEKKVVPATMMS
KSDISVVEEEARDAARVAEQESDGQQQQVEDVEASVSATEVPSREQQHQH
EQLHQHQPPQQQEENAPDFRPSPLEQPIVGPCVQADVFDTSQLPKQQHGE
MDEEHHEEHPDMESQRSPEGEPSPTATDSSPEPQVPEQDDEQQQQPLTRE
DTDGMPRPPSSTPRNHLPPTQTATPSSHQEQPQGDNDENIAAATADAAAA
APRKSNPSSSTTVPTPTPAGNTRRHHANREQRQRQRQNPVPRPSHILRVG
VSLKEGDKMGNRCYEQGVEGWCAPATHLLLDSKGRLELREGWGEGEEKKW
GAKKRLLAFSFARQKRVMEGRDGRREGGHELVLSPRGVLELRGPSGTWLW
RSNVEGEENEEYQAFVSDEGRLVVYLENSIHWKSPT*

mRNA from alignment at chr5:851766..853676-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G03280.1 ID=NO05G03280.1|Name=NO05G03280.1|organism=Nannochloropsis oceanica|type=mRNA|length=1911bp|location=Sequence derived from alignment at chr5:851766..853676- (Nannochloropsis oceanica)
ATGGCCAAGGTGCGCGGGGCCAGCGCTAAAGGAATCTCGCCATCTAAATC
ACCTTCCCGGCGACGCTCCCCTCGCAAGTCCGCCCTAGCAAGGGACTCGG
CAGTCACCAGAACACCCTCCCCGACCCGATCAAGACGAAAGACTCCCGGG
ATTGCGACTCCCGGGAGCGCGACAAAACGAGGTGGAGGAAGTCGGCGAAA
GGCAGCCTCTGTCCCGTCAAATAATACTTTCCATGGTGATGCTACTGCTG
GAGGAGGAGGAGTAGAAGGAGGAGGAGGAAAAGAAGGATGTGGGATAGCA
TCAATTGGTGCCACCACCAAGGAGGACCATGATGCGCATCGCTTGCGAGG
ACCGTATCTGGTCGCCCTGCTGGTAGTAGTGCTCAGCATACATGCCATTG
CCTTCGGCATAGCTTCTTCTTCCTCGCCCTCGTCTACGTCTTGGTCGTGG
GCTTCAATACGGAAGAAAGTGGGAGGATCGAAATGGGAGTCCTTGTCAAG
GCAAAACCTCAAGGTGGTCACCACTGCCGCTCCCTCTACCAATATCAATC
AGCAGCAGGAGAATGAGGAGGGGGAGAGGGAGAAGAAGGAGGAGGAACAT
CAGCAGCAGCAGCTGCCGCTCCAAAGGAAGTTTAAGAGTAAGAGTCAAGA
AGCAGAACCAGTACAAGTAAAAGAAATTGAGAATAAAGGGGAAGAGCGGG
AAGGGAATGGGAGGGTGGAGAAAAAGGTGGTGCCCGCCACGATGATGTCC
AAATCTGACATCTCGGTCGTTGAGGAGGAAGCACGAGACGCAGCCCGTGT
GGCCGAGCAGGAATCGGATGGGCAGCAGCAGCAGGTGGAGGATGTAGAGG
CGTCCGTGTCTGCCACTGAAGTGCCTTCACGAGAGCAACAGCATCAGCAC
GAGCAGCTGCACCAGCATCAGCCGCCGCAGCAACAAGAAGAAAATGCCCC
AGATTTCCGGCCTTCACCCTTGGAGCAGCCGATCGTAGGCCCATGCGTGC
AAGCAGACGTATTTGACACGTCCCAATTACCAAAACAGCAGCACGGAGAA
ATGGACGAAGAACATCACGAGGAGCATCCGGACATGGAATCGCAGCGTAG
CCCTGAAGGAGAGCCTTCTCCCACAGCCACCGACTCTTCACCGGAGCCGC
AGGTGCCGGAGCAGGATGATGAGCAGCAGCAGCAGCCTCTCACACGAGAA
GATACAGATGGTATGCCGAGGCCGCCATCATCGACACCCCGTAATCACCT
CCCCCCTACTCAAACTGCAACACCTTCATCACACCAAGAGCAGCCACAGG
GAGACAATGATGAAAACATCGCGGCTGCTACTGCTGACGCCGCTGCTGCT
GCTCCCCGAAAGTCCAACCCCAGCAGCAGCACTACTGTACCAACACCAAC
GCCCGCTGGAAACACTCGTCGTCATCACGCGAACCGCGAGCAGCGGCAGC
GGCAGCGGCAAAATCCCGTCCCTCGACCTTCCCATATACTCCGCGTGGGG
GTTTCATTAAAAGAAGGCGACAAGATGGGAAATAGGTGCTATGAACAAGG
TGTGGAAGGCTGGTGCGCGCCCGCCACACACCTCCTGCTGGACAGCAAGG
GGAGGCTAGAGCTAAGGGAGGGGTGGGGGGAGGGAGAAGAAAAGAAGTGG
GGTGCGAAGAAGCGGTTGCTCGCTTTTTCGTTCGCACGGCAGAAGAGGGT
GATGGAAGGGAGGGACGGAAGGAGAGAGGGGGGGCATGAATTGGTGCTGT
CGCCGAGGGGGGTTCTGGAGTTAAGGGGGCCGAGTGGCACATGGTTGTGG
AGGTCGAATGTGGAGGGGGAGGAGAATGAGGAGTACCAGGCGTTTGTGAG
CGATGAAGGGAGGTTAGTTGTCTATCTTGAGAACTCAATTCATTGGAAGT
CACCAACATAG

Coding sequence (CDS) from alignment at chr5:851766..853676-

>NO05G03280.1 ID=NO05G03280.1|Name=NO05G03280.1|organism=Nannochloropsis oceanica|type=CDS|length=1911bp|location=Sequence derived from alignment at chr5:851766..853676- (Nannochloropsis oceanica)
ATGGCCAAGGTGCGCGGGGCCAGCGCTAAAGGAATCTCGCCATCTAAATC
ACCTTCCCGGCGACGCTCCCCTCGCAAGTCCGCCCTAGCAAGGGACTCGG
CAGTCACCAGAACACCCTCCCCGACCCGATCAAGACGAAAGACTCCCGGG
ATTGCGACTCCCGGGAGCGCGACAAAACGAGGTGGAGGAAGTCGGCGAAA
GGCAGCCTCTGTCCCGTCAAATAATACTTTCCATGGTGATGCTACTGCTG
GAGGAGGAGGAGTAGAAGGAGGAGGAGGAAAAGAAGGATGTGGGATAGCA
TCAATTGGTGCCACCACCAAGGAGGACCATGATGCGCATCGCTTGCGAGG
ACCGTATCTGGTCGCCCTGCTGGTAGTAGTGCTCAGCATACATGCCATTG
CCTTCGGCATAGCTTCTTCTTCCTCGCCCTCGTCTACGTCTTGGTCGTGG
GCTTCAATACGGAAGAAAGTGGGAGGATCGAAATGGGAGTCCTTGTCAAG
GCAAAACCTCAAGGTGGTCACCACTGCCGCTCCCTCTACCAATATCAATC
AGCAGCAGGAGAATGAGGAGGGGGAGAGGGAGAAGAAGGAGGAGGAACAT
CAGCAGCAGCAGCTGCCGCTCCAAAGGAAGTTTAAGAGTAAGAGTCAAGA
AGCAGAACCAGTACAAGTAAAAGAAATTGAGAATAAAGGGGAAGAGCGGG
AAGGGAATGGGAGGGTGGAGAAAAAGGTGGTGCCCGCCACGATGATGTCC
AAATCTGACATCTCGGTCGTTGAGGAGGAAGCACGAGACGCAGCCCGTGT
GGCCGAGCAGGAATCGGATGGGCAGCAGCAGCAGGTGGAGGATGTAGAGG
CGTCCGTGTCTGCCACTGAAGTGCCTTCACGAGAGCAACAGCATCAGCAC
GAGCAGCTGCACCAGCATCAGCCGCCGCAGCAACAAGAAGAAAATGCCCC
AGATTTCCGGCCTTCACCCTTGGAGCAGCCGATCGTAGGCCCATGCGTGC
AAGCAGACGTATTTGACACGTCCCAATTACCAAAACAGCAGCACGGAGAA
ATGGACGAAGAACATCACGAGGAGCATCCGGACATGGAATCGCAGCGTAG
CCCTGAAGGAGAGCCTTCTCCCACAGCCACCGACTCTTCACCGGAGCCGC
AGGTGCCGGAGCAGGATGATGAGCAGCAGCAGCAGCCTCTCACACGAGAA
GATACAGATGGTATGCCGAGGCCGCCATCATCGACACCCCGTAATCACCT
CCCCCCTACTCAAACTGCAACACCTTCATCACACCAAGAGCAGCCACAGG
GAGACAATGATGAAAACATCGCGGCTGCTACTGCTGACGCCGCTGCTGCT
GCTCCCCGAAAGTCCAACCCCAGCAGCAGCACTACTGTACCAACACCAAC
GCCCGCTGGAAACACTCGTCGTCATCACGCGAACCGCGAGCAGCGGCAGC
GGCAGCGGCAAAATCCCGTCCCTCGACCTTCCCATATACTCCGCGTGGGG
GTTTCATTAAAAGAAGGCGACAAGATGGGAAATAGGTGCTATGAACAAGG
TGTGGAAGGCTGGTGCGCGCCCGCCACACACCTCCTGCTGGACAGCAAGG
GGAGGCTAGAGCTAAGGGAGGGGTGGGGGGAGGGAGAAGAAAAGAAGTGG
GGTGCGAAGAAGCGGTTGCTCGCTTTTTCGTTCGCACGGCAGAAGAGGGT
GATGGAAGGGAGGGACGGAAGGAGAGAGGGGGGGCATGAATTGGTGCTGT
CGCCGAGGGGGGTTCTGGAGTTAAGGGGGCCGAGTGGCACATGGTTGTGG
AGGTCGAATGTGGAGGGGGAGGAGAATGAGGAGTACCAGGCGTTTGTGAG
CGATGAAGGGAGGTTAGTTGTCTATCTTGAGAACTCAATTCATTGGAAGT
CACCAACATAG

Synonyms

Publications