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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:832298..834525 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03210.1 vs.
Match: EWM28084.1 (hypothetical protein Naga_100120g7 [Nannochloropsis gaditana]) HSP 1 Score: 135.2 bits (339), Expect = 4.700e-28 Identity = 124/276 (44.93%), Postives = 154/276 (55.80%), Query Frame = 0
Query: 8 DAASSTPAASVTQAIPAQAVAVS---AAQVDPPPPSASLKAVAGSSGVIESDDEDDMPLTSLAKNGKAVTGDDSSGTTAVSSSSGGAASNPAVAVAPAPKAAAAPASAAPAPVPAASTAAAPKYLNDDDMPISKLFHYPPVAASANGGGSSTAKKRKES-----EGGGGGGGEERKKKSKSDKEKEEEEEAARQKEKKKNKKELERETESSTEAANSSKAKS-FSRSSGSSKSAAHGARTQDFYQLDKGELVQKLLRRWWYAIEWPDAACATLPPP 275
+ S TP+ A A A A + AA DP + K + SSGVIESD EDD+PL++LAKNGK S GG A P++ P +A AS A VPA +Y NDDDMPISKL YP + + AKKRKE EG G GG E K K + EEE+A+R +E KK+ ++ + + A S KS +R+S ++KSAAHG RTQDFY LDKGELVQKLLRRWWYAI+WPD++CAT PPP
Sbjct: 2 EGVSITPSNGAIPATVAPAQAATENEAAPKDPSQAPPAEKTIVQSSGVIESD-EDDVPLSALAKNGKP-------------ESDGGGALAPSLPACQPPASATPVASTTGASVPA-------QYENDDDMPISKLMRYPNLVFAH-------AKKRKEGQSKQIEGNGSGGQGEEKSKKVKQEPPGEEEDASRSQEGGAKKKKKRKDGDGDSGGAMSGNGKSKVTRNSAANKSAAHGQRTQDFYMLDKGELVQKLLRRWWYAIQWPDSSCATQPPP 249
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03210.1 ID=NO05G03210.1|Name=NO05G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=1908bp
CTAATGCAAGGGGGGGGAGGCTGGCTTACCAATTCCTTGCTTTGGTTTCT
GTGGTTCACCATTTATCCCGGACGTTGTGCCATCCTAACGGCAGCGTAGA
GATCTTGAGAAGTTCCTGGTCAGGGGGCGTGGACGACCTTGTCCGCGTCT
TTTCGCTTATTTTCTTCACACTCGCATCCTCTGATTCTTCTTTCACCACA
CGCAACATAATACATCACAGGAGACCGTAACGCCCCCTTTTGGTCACGCG
GGGACGCGAACACCATCACGCTTCTGGTAGCCTTGCTTATGGAGCACGGC
ACCAGCAACGACGCTGCATCCAGCACTCCTGCTGCCTCAGTGACTCAAGC
CATCCCCGCCCAAGCTGTAGCTGTATCCGCAGCCCAGGTTGACCCTCCCC
CACCCTCGGCCTCCCTCAAAGCCGTCGCCGGAAGCTCCGGTGTCATTGAA
AGCGACGACGAGGACGACATGCCTCTCACTTCGTTGGCTAAGAACGGAAA
AGCCGTCACCGGTGACGATTCAAGCGGGACTACGGCTGTCTCCTCTTCTT
CAGGCGGTGCGGCCTCTAATCCTGCTGTCGCTGTTGCTCCTGCTCCCAAG
GCGGCGGCGGCGCCTGCATCAGCAGCACCCGCACCAGTACCCGCAGCATC
GACAGCAGCAGCACCGAAGTATTTGAATGACGACGACATGCCTATTTCCA
AGCTTTTTCATTATCCACCTGTTGCTGCCTCTGCTAATGGCGGCGGCAGC
AGCACAGCGAAGAAGAGAAAAGAATCGGAGGGTGGCGGCGGAGGAGGAGG
GGAGGAGAGAAAGAAAAAGTCTAAGTCTGACAAGGAAAAGGAGGAAGAAG
AAGAGGCGGCAAGGCAAAAAGAAAAGAAAAAGAATAAAAAAGAGCTGGAG
CGGGAGACGGAGAGCAGTACGGAGGCGGCGAATAGCAGCAAGGCCAAGTC
ATTTTCGAGGAGCAGCGGCAGCAGCAAGTCAGCAGCGCACGGGGCGCGAA
CACAAGATTTCTACCAGTTGGACAAGGGTGAATTGGTGCAAAAATTGTTA
CGGCGATGGTGGTATGCGATTGAGTGGCCCGATGCAGCCTGTGCCACGCT
GCCCCCCCCCCTAACTACGAGACGCTGGAGGGGTACCCCGGCGTGTTTGT
CTGCGTCCGTGGCCCTCGCATTGGTCACGTGCTCGACAAGCGGGACCACG
CCACCTGCCCGAACTTCAATAATTTTTCAAGGAAACCGTCGGCAGAGCTC
AAGGAGTTGTTGTTCAAGGCTTTGGATGAACAAAAGCGGCAACTTATGGA
GCACGAAGGGGGAAACTATAAGCTTGAGAAACGGATTGACAAGGAGAGGA
GATGGGCGGAGAAACTGGATGCGGGGAGGGCGGATAAGGAAGCGAGGAGG
AGAGGGTGGGAAGTGGTGGAGGAAAGGGGGGGGGGCGACGTGGAGGGGGG
AGGAGAAAAAAAGGAATTTTGAGGGGGGAAAGAGAATGTGGGAGCGAGAG
AGGGATGAATGGGGTAGAGGAATTAGGTACTGAGAATGAAAAGTCGACAG
GAATCAAATAGATGTGTGTAATGAAACATTAGATAGAAGCAGACTGTTGC
GAATTCACAGGGGGGGATTGGCTGTCGTGTACGGGCGGTAGGAAGGCCGT
GAGCCATGCCTTCCCTTAAGTGATTGAAAGAGAGCCCTTCTGCAGCAGGA
GTCTTTACGAGACGGCGATGGTCATGCCGAGGGTTACAAAGGATTCTAAG
GCCTGCCGCACGTGGTACCCACCTCAAAAAAGAGCTCGGGAGCGAAAGGG
GAGGGGGAGGGGAGACAATAACCCGAAGGCAAGACGAGGACAATCAAAAT
GGAAGACATCACACGCTGTCCACACACCATGAGTAAACAAAAGAACGGAA
AAGAAAGG back to topprotein sequence of NO05G03210.1 >NO05G03210.1-protein ID=NO05G03210.1-protein|Name=NO05G03210.1|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MEHGTSNDAASSTPAASVTQAIPAQAVAVSAAQVDPPPPSASLKAVAGSS
GVIESDDEDDMPLTSLAKNGKAVTGDDSSGTTAVSSSSGGAASNPAVAVA
PAPKAAAAPASAAPAPVPAASTAAAPKYLNDDDMPISKLFHYPPVAASAN
GGGSSTAKKRKESEGGGGGGGEERKKKSKSDKEKEEEEEAARQKEKKKNK
KELERETESSTEAANSSKAKSFSRSSGSSKSAAHGARTQDFYQLDKGELV
QKLLRRWWYAIEWPDAACATLPPPLTTRRWRGTPACLSASVALALVTCST
SGTTPPARTSIIFQGNRRQSSRSCCSRLWMNKSGNLWSTKGETISLRNGL
TRRGDGRRNWMRGGRIRKRGGEGGKWWRKGGGATWRGEEKKRNFEGGKRM
WERERDEWGRGIRY* back to topmRNA from alignment at chr5:832298..834525- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03210.1 ID=NO05G03210.1|Name=NO05G03210.1|organism=Nannochloropsis oceanica|type=mRNA|length=2228bp|location=Sequence derived from alignment at chr5:832298..834525- (Nannochloropsis oceanica)
CTAATGCAAGGGGGGGGAGGCTGGCTTACCAATTCCTTGCTTTGGTTTCT
GTGGTTCACCATTTATCCCGGACGTTGTGCCATCCTAACGGCAGCGTAGA
GATCTTGAGAAGTTCCTGGTCAGGGGGCGTGGACGACCTTGTCCGCGTCT
TTTCGCTTATTTTCTTCACACTCGCATCCTCTGATTCTTCTTTCACCACA
CGCAACATAATACATCACAGGAGACCGTAACGCCCCCTTTTGGTCACGCG
GGGACGCGAACACCATCACGCTTCTGGTAGCCTTGCTTATGGAGCACGGC
ACCAGGTAGGTGGTCAATTGACTGTAGAAGAGGGAACGAGGATCAGCCAA
ATGTGCTTCCATCCACCACCCGTCTCCCAAGGCACAAGGCCCACTTACAC
CCTCCATCTAACTCCACGACAGCAACGACGCTGCATCCAGCACTCCTGCT
GCCTCAGTGACTCAAGCCATCCCCGCCCAAGCTGTAGCTGTATCCGCAGC
CCAGGTTGACCCTCCCCCACCCTCGGCCTCCCTCAAAGCCGTCGCCGGAA
GCTCCGGTGTCATTGAAAGCGACGACGAGGACGACATGCCTCTCACTTCG
TTGGCTAAGAACGGAAAAGCCGTCACCGGTGACGATTCAAGCGGGACTAC
GGCTGTCTCCTCTTCTTCAGGCGGTGCGGCCTCTAATCCTGCTGTCGCTG
TTGCTCCTGCTCCCAAGGCGGCGGCGGCGCCTGCATCAGCAGCACCCGCA
CCAGTACCCGCAGCATCGACAGCAGCAGCACCGAAGTATTTGAATGACGA
CGACATGCCTATTTCCAAGCTTTTTCATTATCCACCTGTTGCTGCCTCTG
CTAATGGCGGCGGCAGCAGCACAGCGAAGAAGAGAAAAGAATCGGAGGGT
GGCGGCGGAGGAGGAGGGGAGGAGAGAAAGAAAAAGTCTAAGTCTGACAA
GGAAAAGGAGGAAGAAGAAGAGGCGGCAAGGCAAAAAGAAAAGAAAAAGA
ATAAAAAAGAGCTGGAGCGGGAGACGGAGAGCAGTACGGAGGCGGCGAAT
AGCAGCAAGGCCAAGTCATTTTCGAGGAGCAGCGGCAGCAGCAAGTCAGC
AGCGCACGGGGCGCGAACACAAGATTTCTACCAGTTGGACAAGGGTGAAT
TGGTGCAAAAATTGTTACGGCGATGGTGGTATGCGATTGAGTGGCCCGAT
GCAGCCTGTGCCACGCTGGTAAGTAGGAAGGGAGAGAGGGAGGGAGGGAG
GAAAGGGTGGACGTGTTGAAGATAGGGTTGTGGGGTTTCGTGACACTAAT
TCTCTGCGTGTCGCCTCTTCATGCCAGTCATACTTCTATGGGTCATGAAT
GAAAGGACGCTTCCGACGACACCAGGTCCACGCACTCACTCCCCTTTCTT
CCTCCCTTTCTCCCTCTTCAGCCCCCCCCCCTAACTACGAGACGCTGGAG
GGGTACCCCGGCGTGTTTGTCTGCGTCCGTGGCCCTCGCATTGGTCACGT
GCTCGACAAGCGGGACCACGCCACCTGCCCGAACTTCAATAATTTTTCAA
GGAAACCGTCGGCAGAGCTCAAGGAGTTGTTGTTCAAGGCTTTGGATGAA
CAAAAGCGGCAACTTATGGAGCACGAAGGGGGAAACTATAAGCTTGAGAA
ACGGATTGACAAGGAGAGGAGATGGGCGGAGAAACTGGATGCGGGGAGGG
CGGATAAGGAAGCGAGGAGGAGAGGGTGGGAAGTGGTGGAGGAAAGGGGG
GGGGGCGACGTGGAGGGGGGAGGAGAAAAAAAGGAATTTTGAGGGGGGAA
AGAGAATGTGGGAGCGAGAGAGGGATGAATGGGGTAGAGGAATTAGGTAC
TGAGAATGAAAAGTCGACAGGAATCAAATAGATGTGTGTAATGAAACATT
AGATAGAAGCAGACTGTTGCGAATTCACAGGGGGGGATTGGCTGTCGTGT
ACGGGCGGTAGGAAGGCCGTGAGCCATGCCTTCCCTTAAGTGATTGAAAG
AGAGCCCTTCTGCAGCAGGAGTCTTTACGAGACGGCGATGGTCATGCCGA
GGGTTACAAAGGATTCTAAGGCCTGCCGCACGTGGTACCCACCTCAAAAA
AGAGCTCGGGAGCGAAAGGGGAGGGGGAGGGGAGACAATAACCCGAAGGC
AAGACGAGGACAATCAAAATGGAAGACATCACACGCTGTCCACACACCAT
GAGTAAACAAAAGAACGGAAAAGAAAGG back to topCoding sequence (CDS) from alignment at chr5:832298..834525- >NO05G03210.1 ID=NO05G03210.1|Name=NO05G03210.1|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at chr5:832298..834525- (Nannochloropsis oceanica)
ATGGAGCACGGCACCAGCAACGACGCTGCATCCAGCACTCCTGCTGCCTC
AGTGACTCAAGCCATCCCCGCCCAAGCTGTAGCTGTATCCGCAGCCCAGG
TTGACCCTCCCCCACCCTCGGCCTCCCTCAAAGCCGTCGCCGGAAGCTCC
GGTGTCATTGAAAGCGACGACGAGGACGACATGCCTCTCACTTCGTTGGC
TAAGAACGGAAAAGCCGTCACCGGTGACGATTCAAGCGGGACTACGGCTG
TCTCCTCTTCTTCAGGCGGTGCGGCCTCTAATCCTGCTGTCGCTGTTGCT
CCTGCTCCCAAGGCGGCGGCGGCGCCTGCATCAGCAGCACCCGCACCAGT
ACCCGCAGCATCGACAGCAGCAGCACCGAAGTATTTGAATGACGACGACA
TGCCTATTTCCAAGCTTTTTCATTATCCACCTGTTGCTGCCTCTGCTAAT
GGCGGCGGCAGCAGCACAGCGAAGAAGAGAAAAGAATCGGAGGGTGGCGG
CGGAGGAGGAGGGGAGGAGAGAAAGAAAAAGTCTAAGTCTGACAAGGAAA
AGGAGGAAGAAGAAGAGGCGGCAAGGCAAAAAGAAAAGAAAAAGAATAAA
AAAGAGCTGGAGCGGGAGACGGAGAGCAGTACGGAGGCGGCGAATAGCAG
CAAGGCCAAGTCATTTTCGAGGAGCAGCGGCAGCAGCAAGTCAGCAGCGC
ACGGGGCGCGAACACAAGATTTCTACCAGTTGGACAAGGGTGAATTGGTG
CAAAAATTGTTACGGCGATGGTGGTATGCGATTGAGTGGCCCGATGCAGC
CTGTGCCACGCTGCCCCCCCCCCTAACTACGAGACGCTGGAGGGGTACCC
CGGCGTGTTTGTCTGCGTCCGTGGCCCTCGCATTGGTCACGTGCTCGACA
AGCGGGACCACGCCACCTGCCCGAACTTCAATAATTTTTCAAGGAAACCG
TCGGCAGAGCTCAAGGAGTTGTTGTTCAAGGCTTTGGATGAACAAAAGCG
GCAACTTATGGAGCACGAAGGGGGAAACTATAAGCTTGAGAAACGGATTG
ACAAGGAGAGGAGATGGGCGGAGAAACTGGATGCGGGGAGGGCGGATAAG
GAAGCGAGGAGGAGAGGGTGGGAAGTGGTGGAGGAAAGGGGGGGGGGCGA
CGTGGAGGGGGGAGGAGAAAAAAAGGAATTTTGAGGGGGGAAAGAGAATG
TGGGAGCGAGAGAGGGATGAATGGGGTAGAGGAATTAGGTACTGA back to top
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