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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:828360..830456 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03190.1 vs.
Match: EWM28094.1 (sodium hydrogen exchanger [Nannochloropsis gaditana]) HSP 1 Score: 763.1 bits (1969), Expect = 7.700e-217 Identity = 439/701 (62.62%), Postives = 533/701 (76.03%), Query Frame = 0
Query: 2 RRRWQQPWWRRLPLFVVIPLVLA-------LLHGVLRPTAATENQGVAVIK--HYAYDDNAHHTI-----EKDEGGSQAGDKPSDLLAEAEDEMDRDAEIVSKVQVEVDRLQALWKKVFDNPTDGDGSGSSSSKDGVASKKDLSNRQELQREMSRIQESLLTLISHMDETKQDLTQAHDAIDQKETLQDLEQLVREGKLGVNYETGELAPAALSNLTSARHHPAAATNNAAEGGDGGGEATDAPRGHKKHRAIGEADNGHI---GTGSSSSSAITQQQQE-MAAAVNKLQQAADPAVLHLDVELLRDVVLLSVSTALGGFAATVLHLPAACGYMIAGMFIGPSGMNLMTKVVEVETLAQFGSIFLLFGHGMIYCQQFHITQLGGTLSDTFAAGVLILSIIFFLIILAYTCFVGSAQFYQATLVASAVSLSSTTATAHVLVANRLRETGYGQTLIELMSVQDLLMAPLLSIPTAVKELMSEHGLLHTILILARYAAAITGAAMLSKKYMPRIINLRNRAENSLSLDLFILGLVSYCLLMSLLTEWMGLSHEAGALLAGLVLADVPQIGKAVVVMEPLTCLFGGMYLGSLGMILSPLFLVHHMGTIVLCVTAVLLIKIATVSIGMRVLDYSLKASLLGALSMAHISELSLFLVSRAQEYKLISRHVYLMVVATTIILLILTPFASHAFKGVDRNEYKKGIHKS 685
RR+WQQPWW R FV+ +VL + P + Q V K A D H I DE + GDK SDL+AEAE+EM+ ++ + S V V+V+RLQ LW++VF+N G G +SS V +NR+ELQRE +RIQ+SL L+SH++ETK+DLTQ HDA++QKETL +LE+LVR+GK+GVNYETGEL + L NL+SA AA G GE +I E +N + + +SA++ QQQE +AAAV+KLQQA DPAVLHLDV LLRDVV+LSVSTALGGF ATV+HLP A G+++AGM IGPSG+ +MT+V EVETLAQFGSIFLLFGHGM+YCQQ+ ++ LG TL DTF G+LILS IFFL ILAYT +G + FYQATLVASAVSLSSTTATAH L+ANRLRETGYG+TL+ELM+VQDLLMAPLLSIPTA+KEL+ +HGLLH + +L YA A+ AA++SK+ MPR+INLRNRAENSLSLDLFILGLV+YCLLMSLLTEWMGLS+EAGALLAGL++ADVPQ+GKAV VMEPLTCLFGGMYLGSLGMILSP FL HH GTI+LCV +++IK+A+VS+GMR L YSLKAS+LGAL+MA ISELSLFLVSRAQEYKLISR VYLMVVATT++LL+LTPF+SHA K ++R E K G++KS
Sbjct: 6 RRQWQQPWWYRALFFVIALVVLTKNIDSVIAAENIAVPEVSKSGQDVTQPKAGEAAQRDARHAWIGHEPRHGDESREKPGDKTSDLVAEAEEEMNEESALASTVSVDVERLQTLWRQVFENIERGKGDEDASSPQAVR-----TNREELQREFARIQQSLHMLMSHINETKEDLTQVHDALEQKETLDNLEELVRQGKMGVNYETGELTSSVLKNLSSAFPQSGAA---------GSGE-----------ESISEENNNGVEISDVSDTETSALSMQQQEDLAAAVSKLQQAVDPAVLHLDVNLLRDVVVLSVSTALGGFGATVMHLPPAFGFIVAGMVIGPSGLKVMTEVTEVETLAQFGSIFLLFGHGMLYCQQYQLSPLGSTLPDTFLVGLLILSAIFFLSILAYTWCLGPSSFYQATLVASAVSLSSTTATAHALLANRLRETGYGKTLVELMAVQDLLMAPLLSIPTAIKELLFQHGLLHMLPVLMSYALALLAAAVVSKRLMPRLINLRNRAENSLSLDLFILGLVAYCLLMSLLTEWMGLSYEAGALLAGLIVADVPQVGKAVAVMEPLTCLFGGMYLGSLGMILSPAFLAHHAGTILLCVAVMIVIKVASVSLGMRSLGYSLKASVLGALTMAQISELSLFLVSRAQEYKLISRQVYLMVVATTVVLLMLTPFSSHALKHLERVESKVGVNKS 681
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03190.1 ID=NO05G03190.1|Name=NO05G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp
ATGAGGAGACGGTGGCAGCAGCCATGGTGGCGGCGGCTTCCTCTCTTTGT
GGTGATTCCGCTGGTTTTGGCGTTGCTTCATGGTGTCTTACGCCCCACCG
CAGCAACCGAAAACCAGGGCGTGGCGGTGATCAAGCATTATGCATACGAT
GATAATGCCCACCATACAATTGAGAAAGACGAGGGTGGATCCCAAGCAGG
TGATAAACCAAGTGACCTGCTCGCCGAGGCAGAGGACGAAATGGACAGAG
ATGCGGAGATAGTCAGCAAGGTCCAGGTGGAAGTAGACCGGCTTCAAGCA
CTCTGGAAGAAAGTATTTGACAATCCCACCGACGGTGACGGCAGCGGCTC
AAGCAGTAGCAAAGACGGTGTAGCGAGTAAGAAAGACTTGTCCAACCGGC
AAGAGCTCCAGAGGGAAATGTCTCGCATTCAAGAAAGTTTGTTGACGCTC
ATATCTCACATGGACGAGACGAAGCAAGACTTAACCCAAGCCCACGACGC
GATCGATCAAAAGGAAACGCTCCAAGACCTGGAACAGCTCGTCCGAGAAG
GCAAACTGGGCGTCAATTACGAGACAGGCGAGCTGGCTCCCGCGGCCTTG
AGCAATCTAACAAGCGCTCGTCACCATCCAGCAGCGGCTACGAACAATGC
TGCAGAGGGTGGTGATGGTGGTGGAGAAGCAACAGATGCACCCCGCGGGC
ACAAAAAGCACCGCGCTATAGGCGAGGCTGACAACGGCCATATCGGCACT
GGCTCCTCGTCCTCCTCGGCAATCACGCAGCAACAGCAAGAGATGGCCGC
AGCGGTGAATAAGCTTCAACAGGCGGCAGACCCGGCGGTCTTACACCTGG
ACGTGGAGTTATTGCGAGATGTCGTGTTACTGTCAGTAAGCACGGCCTTG
GGGGGCTTTGCGGCCACTGTGCTTCATTTACCGGCAGCGTGTGGGTACAT
GATTGCTGGGATGTTTATTGGTCCATCGGGCATGAATCTGATGACGAAGG
TAGTGGAGGTGGAGACACTCGCACAGTTCGGCTCCATCTTTTTGTTGTTT
GGTCATGGCATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGG
AACTCTCTCGGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCT
TCTTTCTAATCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTC
TATCAAGCCACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGC
AACCGCGCATGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCC
AAACGCTAATTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTT
CTTTCCATTCCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCT
GCATACGATTCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGG
CGATGTTGAGCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGC
GCGGAGAATTCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTA
TTGCCTTCTAATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAG
CGGGTGCATTGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGG
AAGGCGGTTGTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTA
CCTCGGGTCATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACA
TGGGCACCATTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCT
ACTGTTTCTATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCT
GCTTGGAGCGTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCG
TCTCCCGCGCCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATG
GTGGTGGCTACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCA
TGCCTTCAAAGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAAT
CAATTTTTGCCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAA back to topprotein sequence of NO05G03190.1 >NO05G03190.1-protein ID=NO05G03190.1-protein|Name=NO05G03190.1|organism=Nannochloropsis oceanica|type=polypeptide|length=699bp
MRRRWQQPWWRRLPLFVVIPLVLALLHGVLRPTAATENQGVAVIKHYAYD
DNAHHTIEKDEGGSQAGDKPSDLLAEAEDEMDRDAEIVSKVQVEVDRLQA
LWKKVFDNPTDGDGSGSSSSKDGVASKKDLSNRQELQREMSRIQESLLTL
ISHMDETKQDLTQAHDAIDQKETLQDLEQLVREGKLGVNYETGELAPAAL
SNLTSARHHPAAATNNAAEGGDGGGEATDAPRGHKKHRAIGEADNGHIGT
GSSSSSAITQQQQEMAAAVNKLQQAADPAVLHLDVELLRDVVLLSVSTAL
GGFAATVLHLPAACGYMIAGMFIGPSGMNLMTKVVEVETLAQFGSIFLLF
GHGMIYCQQFHITQLGGTLSDTFAAGVLILSIIFFLIILAYTCFVGSAQF
YQATLVASAVSLSSTTATAHVLVANRLRETGYGQTLIELMSVQDLLMAPL
LSIPTAVKELMSEHGLLHTILILARYAAAITGAAMLSKKYMPRIINLRNR
AENSLSLDLFILGLVSYCLLMSLLTEWMGLSHEAGALLAGLVLADVPQIG
KAVVVMEPLTCLFGGMYLGSLGMILSPLFLVHHMGTIVLCVTAVLLIKIA
TVSIGMRVLDYSLKASLLGALSMAHISELSLFLVSRAQEYKLISRHVYLM
VVATTIILLILTPFASHAFKGVDRNEYKKGIHKSIFAKGPVAAPSSAS* back to topmRNA from alignment at chr5:828360..830456- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03190.1 ID=NO05G03190.1|Name=NO05G03190.1|organism=Nannochloropsis oceanica|type=mRNA|length=2097bp|location=Sequence derived from alignment at chr5:828360..830456- (Nannochloropsis oceanica)
ATGAGGAGACGGTGGCAGCAGCCATGGTGGCGGCGGCTTCCTCTCTTTGT
GGTGATTCCGCTGGTTTTGGCGTTGCTTCATGGTGTCTTACGCCCCACCG
CAGCAACCGAAAACCAGGGCGTGGCGGTGATCAAGCATTATGCATACGAT
GATAATGCCCACCATACAATTGAGAAAGACGAGGGTGGATCCCAAGCAGG
TGATAAACCAAGTGACCTGCTCGCCGAGGCAGAGGACGAAATGGACAGAG
ATGCGGAGATAGTCAGCAAGGTCCAGGTGGAAGTAGACCGGCTTCAAGCA
CTCTGGAAGAAAGTATTTGACAATCCCACCGACGGTGACGGCAGCGGCTC
AAGCAGTAGCAAAGACGGTGTAGCGAGTAAGAAAGACTTGTCCAACCGGC
AAGAGCTCCAGAGGGAAATGTCTCGCATTCAAGAAAGTTTGTTGACGCTC
ATATCTCACATGGACGAGACGAAGCAAGACTTAACCCAAGCCCACGACGC
GATCGATCAAAAGGAAACGCTCCAAGACCTGGAACAGCTCGTCCGAGAAG
GCAAACTGGGCGTCAATTACGAGACAGGCGAGCTGGCTCCCGCGGCCTTG
AGCAATCTAACAAGCGCTCGTCACCATCCAGCAGCGGCTACGAACAATGC
TGCAGAGGGTGGTGATGGTGGTGGAGAAGCAACAGATGCACCCCGCGGGC
ACAAAAAGCACCGCGCTATAGGCGAGGCTGACAACGGCCATATCGGCACT
GGCTCCTCGTCCTCCTCGGCAATCACGCAGCAACAGCAAGAGATGGCCGC
AGCGGTGAATAAGCTTCAACAGGCGGCAGACCCGGCGGTCTTACACCTGG
ACGTGGAGTTATTGCGAGATGTCGTGTTACTGTCAGTAAGCACGGCCTTG
GGGGGCTTTGCGGCCACTGTGCTTCATTTACCGGCAGCGTGTGGGTACAT
GATTGCTGGGATGTTTATTGGTCCATCGGGCATGAATCTGATGACGAAGG
TAGTGGAGGTGGAGACACTCGCACAGTTCGGCTCCATCTTTTTGTTGTTT
GGTCATGGCATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGG
AACTCTCTCGGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCT
TCTTTCTAATCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTC
TATCAAGCCACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGC
AACCGCGCATGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCC
AAACGCTAATTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTT
CTTTCCATTCCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCT
GCATACGATTCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGG
CGATGTTGAGCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGC
GCGGAGAATTCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTA
TTGCCTTCTAATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAG
CGGGTGCATTGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGG
AAGGCGGTTGTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTA
CCTCGGGTCATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACA
TGGGCACCATTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCT
ACTGTTTCTATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCT
GCTTGGAGCGTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCG
TCTCCCGCGCCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATG
GTGGTGGCTACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCA
TGCCTTCAAAGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAAT
CAATTTTTGCCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAA back to topCoding sequence (CDS) from alignment at chr5:828360..830456- >NO05G03190.1 ID=NO05G03190.1|Name=NO05G03190.1|organism=Nannochloropsis oceanica|type=CDS|length=2097bp|location=Sequence derived from alignment at chr5:828360..830456- (Nannochloropsis oceanica)
ATGAGGAGACGGTGGCAGCAGCCATGGTGGCGGCGGCTTCCTCTCTTTGT
GGTGATTCCGCTGGTTTTGGCGTTGCTTCATGGTGTCTTACGCCCCACCG
CAGCAACCGAAAACCAGGGCGTGGCGGTGATCAAGCATTATGCATACGAT
GATAATGCCCACCATACAATTGAGAAAGACGAGGGTGGATCCCAAGCAGG
TGATAAACCAAGTGACCTGCTCGCCGAGGCAGAGGACGAAATGGACAGAG
ATGCGGAGATAGTCAGCAAGGTCCAGGTGGAAGTAGACCGGCTTCAAGCA
CTCTGGAAGAAAGTATTTGACAATCCCACCGACGGTGACGGCAGCGGCTC
AAGCAGTAGCAAAGACGGTGTAGCGAGTAAGAAAGACTTGTCCAACCGGC
AAGAGCTCCAGAGGGAAATGTCTCGCATTCAAGAAAGTTTGTTGACGCTC
ATATCTCACATGGACGAGACGAAGCAAGACTTAACCCAAGCCCACGACGC
GATCGATCAAAAGGAAACGCTCCAAGACCTGGAACAGCTCGTCCGAGAAG
GCAAACTGGGCGTCAATTACGAGACAGGCGAGCTGGCTCCCGCGGCCTTG
AGCAATCTAACAAGCGCTCGTCACCATCCAGCAGCGGCTACGAACAATGC
TGCAGAGGGTGGTGATGGTGGTGGAGAAGCAACAGATGCACCCCGCGGGC
ACAAAAAGCACCGCGCTATAGGCGAGGCTGACAACGGCCATATCGGCACT
GGCTCCTCGTCCTCCTCGGCAATCACGCAGCAACAGCAAGAGATGGCCGC
AGCGGTGAATAAGCTTCAACAGGCGGCAGACCCGGCGGTCTTACACCTGG
ACGTGGAGTTATTGCGAGATGTCGTGTTACTGTCAGTAAGCACGGCCTTG
GGGGGCTTTGCGGCCACTGTGCTTCATTTACCGGCAGCGTGTGGGTACAT
GATTGCTGGGATGTTTATTGGTCCATCGGGCATGAATCTGATGACGAAGG
TAGTGGAGGTGGAGACACTCGCACAGTTCGGCTCCATCTTTTTGTTGTTT
GGTCATGGCATGATTTACTGCCAGCAATTTCATATCACGCAATTAGGAGG
AACTCTCTCGGATACTTTCGCGGCAGGGGTGCTTATCCTATCGATAATCT
TCTTTCTAATCATTTTGGCCTACACATGCTTTGTGGGCAGCGCTCAGTTC
TATCAAGCCACGCTAGTCGCGTCTGCCGTGTCCTTGTCCTCGACCACAGC
AACCGCGCATGTGCTGGTTGCCAATCGGCTGCGAGAGACGGGTTATGGCC
AAACGCTAATTGAGCTCATGTCCGTCCAAGATCTGTTGATGGCCCCCCTT
CTTTCCATTCCTACCGCGGTGAAAGAGCTTATGTCCGAGCACGGCTTGCT
GCATACGATTCTGATTCTTGCTCGTTACGCCGCTGCGATCACGGGTGCGG
CGATGTTGAGCAAGAAGTATATGCCTCGGATTATAAATTTGAGGAATCGC
GCGGAGAATTCACTAAGTCTCGATTTGTTCATCTTGGGCTTGGTGTCGTA
TTGCCTTCTAATGTCTTTGCTGACGGAATGGATGGGGTTGAGCCACGAAG
CGGGTGCATTGCTTGCTGGGCTTGTCTTGGCGGATGTACCTCAGATTGGG
AAGGCGGTTGTGGTGATGGAGCCTTTGACTTGCTTGTTTGGCGGAATGTA
CCTCGGGTCATTGGGCATGATCCTCAGTCCTCTCTTCCTGGTTCATCACA
TGGGCACCATTGTCCTGTGTGTAACGGCGGTGTTGCTGATTAAGATTGCT
ACTGTTTCTATCGGCATGCGCGTGCTGGACTACTCGCTGAAAGCCTCTCT
GCTTGGAGCGTTGTCCATGGCACACATCTCCGAACTTTCCCTCTTCCTCG
TCTCCCGCGCCCAAGAATACAAGCTCATCTCCCGGCATGTCTACCTGATG
GTGGTGGCTACCACAATCATCCTCCTCATCCTTACGCCCTTCGCTTCTCA
TGCCTTCAAAGGAGTCGATCGCAACGAGTATAAGAAAGGCATTCATAAAT
CAATTTTTGCCAAAGGTCCTGTCGCCGCGCCATCGTCAGCATCGTAA back to top
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