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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| chr5 | genome | chr5:821514..823820 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03170.1 vs.
Match: EWM28079.1 (hypothetical protein Naga_100120g16 [Nannochloropsis gaditana]) HSP 1 Score: 407.1 bits (1045), Expect = 1.100e-109 Identity = 390/733 (53.21%), Postives = 484/733 (66.03%), Query Frame = 0
Query: 1 MRSDHSRRPLSRGTGLPSLLVLLVLLGASMAFLLPSSHLSAVTLSTATWRVAPLQAVPPPAVDYTAATTVTVQVQQHRMQELEAKVMAVSDTQVRGAATDVEPLLAAVVEEKPLDAIVKTSSGALKGFEGVALLGALPLAFFSARTLERKQKELEAVAAKELEDNAARIDREAEQARAKAVEDAQKAAKKELLDVKIQRARDEENRLRKNQEEEIEREKAKQDAIAAQKVAEQKELQIKREGEQAAAASLQREQRAAEELAKLSIAPEQNVEAAAAAAAKKEAEMKAAAEAKA-AAEAKAAAEAKAKADAAAAAAAAKKEAELK---AAAEAKAAAEAKAKADAEAAAAAAAKKEAEMIAAAEAKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADAEASAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKSDAEDIRKQEKAQAFKTKQAEEARAAAEKRADAVKAKREKEQAEERQRLIKVKAAKEGAAAKHAEIAQAQAKKKQLEVQAKAGAKTKAPAPITSDVPKNTTPASVAAPEAVPAPNKPVELSAAEQAAQRARREEEIRARARETQKELSKRMVADLTEKLSIPKLKDYLKQNKVKGPKSSAKKADFVSAALTVAETKGWEASVMELQSLSSVQAKGFGGGGASKGDAKKKK 730
M ++H R R + +L+LLV+LG + AFLLPS H S +T S AT RVAP+QA P PA+D TV++ +Q L+AKV+A ++ T PLLA VEEKP DA+VKTSSGALKGFEG A+LGALPLAFFSARTL++KQKE EA AA+++ED+AAR+ REAEQAR KA+EDAQKAAK+E+L+ KIQRAR+EE RLRKNQE E+EREK KQ+ +AAQK AEQK Q KRE EQA A+ LQ +QR A E AK E+ A A AK EA AAAEAKA A E +A AEAKA+A+AA A K++ E + AA +AK AEAK +A+ E A AA+KE K A E KA+ +A+ A AA+ E E +AA EAK +A E AAAK++AE +AA A+ AA +KE + KAAAEAKA+A+ AAAKK+ E + EA+AK +AE A K EAE +A +A AED RKQE A A + KQA AR AA++RA V+AKREKE A E++R K+K AK A AEIA+ +KK + A T P A+ A + +PAP K + +A +++A+RA REE++RARARE QK++SKRMV DLT KLSIPKLKDYLKQNK + PKSSAKKADFV+A L VAE KGWE SVMELQ+LSSVQAKGFGGGG D+KKKK
Sbjct: 1 MTANHDLRRADRAN-VQVVLLLLVVLGGAAAFLLPSKH-STIT-SKATRRVAPVQATPSPAIDQHDFATVSIFSGNDEIQTLDAKVLAAANAGQPSKGTGTMPLLATTVEEKPFDAVVKTSSGALKGFEGFAVLGALPLAFFSARTLDKKQKETEAEAARQMEDDAARMAREAEQARVKALEDAQKAAKREMLEAKIQRAREEEERLRKNQEMELEREKQKQELLAAQKAAEQKVQQEKREQEQAEASRLQAKQREAAEAAKQLKIEEEKAAQAQAEKAKAEAAAAAAAEAKAKAEEERAIAEAKAQAEAAQKKAEEKRQEEARQAAAAQKAKEEAEAKERAEHEEAMRLAAQKE---------KEALEEKARVEAQKAKEEAARLEEEKRAAEEAKIRAQQEDE--AAAKRKAEEEAAVR-----KAQEIEAARQEKERQEKAAAEAKAQAE------AAAKKKREQE---EAEAKREAE---EAVRKAEAERLSALKA-----AEDKRKQEIAAAEREKQAGIARKAAKERAAVVRAKREKENALEKERQEKLKRAKAAALEARAEIAKDSDEKKAVPQANIRAASTVDPR------------AAQAQSDELPAPTKKDKSAATDESAERALREEKVRARAREQQKDMSKRMVEDLTVKLSIPKLKDYLKQNKAQSPKSSAKKADFVNAVLGVAEEKGWEVSVMELQNLSSVQAKGFGGGGGPGADSKKKK 685
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03170.1 ID=NO05G03170.1|Name=NO05G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp
AACAGGGCACGCGTAAAACGCGTCCAAGCCCGCCGCCTCGCTAGCCCGTC
GTCCACCCCACAACTCTCTTCAAGGAACAACTTACCTTCAGGCAGGAGCA
AGGAACAGGCTACAGCAATGAGGAGCGATCACTCAAGAAGACCACTCAGC
AGGGGGACAGGCTTGCCATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGC
CAGCATGGCTTTTCTCCTCCCGTCTTCCCACCTGTCCGCCGTGACCCTCT
CCACTGCAACATGGCGTGTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCG
GTCGACTACACCGCTGCGACCACGGTCACCGTCCAGGTGCAGCAGCATCG
AATGCAAGAATTGGAGGCCAAGGTTATGGCTGTCTCGGACACGCAGGTGC
GCGGCGCGGCCACTGATGTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAG
AAGCCGCTTGATGCTATCGTGAAGACGTCTAGCGGTGCCCTCAAAGGATT
CGAAGGCGTGGCCCTGTTGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGC
GTACGCTGGAGAGGAAGCAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAG
CTGGAGGACAACGCAGCGCGCATTGACCGAGAAGCGGAACAAGCCCGCGC
CAAGGCCGTGGAAGACGCTCAGAAGGCGGCAAAGAAGGAACTCCTCGATG
TTAAAATTCAGCGGGCCCGCGATGAAGAGAATCGTCTTCGCAAGAACCAG
GAAGAGGAGATCGAGCGTGAGAAGGCCAAACAAGATGCCATCGCCGCCCA
AAAGGTTGCCGAGCAAAAAGAACTACAAATCAAGCGTGAAGGGGAACAAG
CTGCGGCGGCCAGCCTGCAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCT
AAGCTTTCCATCGCCCCAGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGC
AGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGG
CTGAAGCGAAGGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCA
GCAGCAGCGGCAGCAAAGAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGC
AAAAGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAG
CGGCAGCAGCCAAGAAGGAAGCCGAGATGATAGCCGCGGCTGAAGCAAAA
GCGGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGC
AGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCA
AGGCGGATGCAGAGGCATCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAG
ATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGC
AGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGA
AGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAA
GCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGC
AGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTG
AAGCTAAGGCCAAATCAGATGCGGAAGACATACGCAAGCAAGAAAAAGCA
CAGGCATTCAAAACAAAGCAAGCAGAGGAGGCTAGGGCGGCTGCTGAGAA
GCGAGCTGATGCTGTCAAGGCCAAGCGTGAGAAGGAGCAGGCGGAAGAGC
GACAGCGTTTAATCAAGGTGAAGGCAGCAAAGGAGGGCGCGGCAGCCAAA
CATGCTGAGATTGCCCAGGCGCAAGCGAAGAAGAAGCAATTAGAAGTGCA
AGCAAAGGCGGGTGCAAAGACAAAGGCCCCTGCTCCTATTACCTCTGATG
TTCCTAAGAATACCACTCCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCCG
GCACCAAACAAGCCCGTCGAGTTAAGCGCCGCAGAGCAGGCGGCTCAACG
TGCACGACGAGAGGAGGAGATTCGGGCCCGGGCACGAGAGACGCAAAAAG
AGTTGTCGAAGCGGATGGTGGCCGATTTGACCGAAAAATTGTCGATTCCC
AAGTTGAAGGATTACTTGAAGCAGAATAAGGTGAAGGGCCCGAAGAGTAG
TGCGAAAAAGGCAGACTTTGTGAGTGCTGCCTTGACTGTAGCGGAGACAA
AAGGATGGGAAGCTTCAGTGATGGAGTTGCAGAGTTTGAGCAGCGTGCAG
GCCAAGGGGTTTGGGGGTGGCGGGGCGTCGAAGGGAGATGCGAAGAAAAA
GAAGTAA back to topprotein sequence of NO05G03170.1 >NO05G03170.1-protein ID=NO05G03170.1-protein|Name=NO05G03170.1|organism=Nannochloropsis oceanica|type=polypeptide|length=730bp
MRSDHSRRPLSRGTGLPSLLVLLVLLGASMAFLLPSSHLSAVTLSTATWR
VAPLQAVPPPAVDYTAATTVTVQVQQHRMQELEAKVMAVSDTQVRGAATD
VEPLLAAVVEEKPLDAIVKTSSGALKGFEGVALLGALPLAFFSARTLERK
QKELEAVAAKELEDNAARIDREAEQARAKAVEDAQKAAKKELLDVKIQRA
RDEENRLRKNQEEEIEREKAKQDAIAAQKVAEQKELQIKREGEQAAAASL
QREQRAAEELAKLSIAPEQNVEAAAAAAAKKEAEMKAAAEAKAAAEAKAA
AEAKAKADAAAAAAAAKKEAELKAAAEAKAAAEAKAKADAEAAAAAAAKK
EAEMIAAAEAKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADAEA
SAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKADA
EAAAAAAAKKEAEMKAAAEAKAKADAEAAAAAAAKKEAEMKAAAEAKAKS
DAEDIRKQEKAQAFKTKQAEEARAAAEKRADAVKAKREKEQAEERQRLIK
VKAAKEGAAAKHAEIAQAQAKKKQLEVQAKAGAKTKAPAPITSDVPKNTT
PASVAAPEAVPAPNKPVELSAAEQAAQRARREEEIRARARETQKELSKRM
VADLTEKLSIPKLKDYLKQNKVKGPKSSAKKADFVSAALTVAETKGWEAS
VMELQSLSSVQAKGFGGGGASKGDAKKKK* back to topmRNA from alignment at chr5:821514..823820+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03170.1 ID=NO05G03170.1|Name=NO05G03170.1|organism=Nannochloropsis oceanica|type=mRNA|length=2307bp|location=Sequence derived from alignment at chr5:821514..823820+ (Nannochloropsis oceanica)
AACAGGGCACGCGTAAAACGCGTCCAAGCCCGCCGCCTCGCTAGCCCGTC
GTCCACCCCACAACTCTCTTCAAGGAACAACTTACCTTCAGGCAGGAGCA
AGGAACAGGCTACAGCAATGAGGAGCGATCACTCAAGAAGACCACTCAGC
AGGGGGACAGGCTTGCCATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGC
CAGCATGGCTTTTCTCCTCCCGTCTTCCCACCTGTCCGCCGTGACCCTCT
CCACTGCAACATGGCGTGTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCG
GTCGACTACACCGCTGCGACCACGGTCACCGTCCAGGTGCAGCAGCATCG
AATGCAAGAATTGGAGGCCAAGGTTATGGCTGTCTCGGACACGCAGGTGC
GCGGCGCGGCCACTGATGTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAG
AAGCCGCTTGATGCTATCGTGAAGACGTCTAGCGGTGCCCTCAAAGGATT
CGAAGGCGTGGCCCTGTTGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGC
GTACGCTGGAGAGGAAGCAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAG
CTGGAGGACAACGCAGCGCGCATTGACCGAGAAGCGGAACAAGCCCGCGC
CAAGGCCGTGGAAGACGCTCAGAAGGCGGCAAAGAAGGAACTCCTCGATG
TTAAAATTCAGCGGGCCCGCGATGAAGAGAATCGTCTTCGCAAGAACCAG
GAAGAGGAGATCGAGCGTGAGAAGGCCAAACAAGATGCCATCGCCGCCCA
AAAGGTTGCCGAGCAAAAAGAACTACAAATCAAGCGTGAAGGGGAACAAG
CTGCGGCGGCCAGCCTGCAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCT
AAGCTTTCCATCGCCCCAGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGC
AGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGG
CTGAAGCGAAGGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCA
GCAGCAGCGGCAGCAAAGAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGC
AAAAGCGGCGGCCGAAGCGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAG
CGGCAGCAGCCAAGAAGGAAGCCGAGATGATAGCCGCGGCTGAAGCAAAA
GCGGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGC
AGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCA
AGGCGGATGCAGAGGCATCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAG
ATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGC
AGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGA
AGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAA
GCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGC
AGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTG
AAGCTAAGGCCAAATCAGATGCGGAAGACATACGCAAGCAAGAAAAAGCA
CAGGCATTCAAAACAAAGCAAGCAGAGGAGGCTAGGGCGGCTGCTGAGAA
GCGAGCTGATGCTGTCAAGGCCAAGCGTGAGAAGGAGCAGGCGGAAGAGC
GACAGCGTTTAATCAAGGTGAAGGCAGCAAAGGAGGGCGCGGCAGCCAAA
CATGCTGAGATTGCCCAGGCGCAAGCGAAGAAGAAGCAATTAGAAGTGCA
AGCAAAGGCGGGTGCAAAGACAAAGGCCCCTGCTCCTATTACCTCTGATG
TTCCTAAGAATACCACTCCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCCG
GCACCAAACAAGCCCGTCGAGTTAAGCGCCGCAGAGCAGGCGGCTCAACG
TGCACGACGAGAGGAGGAGATTCGGGCCCGGGCACGAGAGACGCAAAAAG
AGTTGTCGAAGCGGATGGTGGCCGATTTGACCGAAAAATTGTCGATTCCC
AAGTTGAAGGATTACTTGAAGCAGAATAAGGTGAAGGGCCCGAAGAGTAG
TGCGAAAAAGGCAGACTTTGTGAGTGCTGCCTTGACTGTAGCGGAGACAA
AAGGATGGGAAGCTTCAGTGATGGAGTTGCAGAGTTTGAGCAGCGTGCAG
GCCAAGGGGTTTGGGGGTGGCGGGGCGTCGAAGGGAGATGCGAAGAAAAA
GAAGTAA back to topCoding sequence (CDS) from alignment at chr5:821514..823820+ >NO05G03170.1 ID=NO05G03170.1|Name=NO05G03170.1|organism=Nannochloropsis oceanica|type=CDS|length=2190bp|location=Sequence derived from alignment at chr5:821514..823820+ (Nannochloropsis oceanica)
ATGAGGAGCGATCACTCAAGAAGACCACTCAGCAGGGGGACAGGCTTGCC
ATCGCTTCTGGTGCTGCTCGTGTTGCTCGGCGCCAGCATGGCTTTTCTCC
TCCCGTCTTCCCACCTGTCCGCCGTGACCCTCTCCACTGCAACATGGCGT
GTGGCCCCCCTCCAGGCCGTTCCTCCGCCCGCGGTCGACTACACCGCTGC
GACCACGGTCACCGTCCAGGTGCAGCAGCATCGAATGCAAGAATTGGAGG
CCAAGGTTATGGCTGTCTCGGACACGCAGGTGCGCGGCGCGGCCACTGAT
GTGGAGCCTCTACTGGCGGCGGTCGTTGAGGAGAAGCCGCTTGATGCTAT
CGTGAAGACGTCTAGCGGTGCCCTCAAAGGATTCGAAGGCGTGGCCCTGT
TGGGTGCTTTGCCCTTGGCCTTCTTCTCGGCGCGTACGCTGGAGAGGAAG
CAAAAGGAATTGGAGGCTGTGGCTGCCAAGGAGCTGGAGGACAACGCAGC
GCGCATTGACCGAGAAGCGGAACAAGCCCGCGCCAAGGCCGTGGAAGACG
CTCAGAAGGCGGCAAAGAAGGAACTCCTCGATGTTAAAATTCAGCGGGCC
CGCGATGAAGAGAATCGTCTTCGCAAGAACCAGGAAGAGGAGATCGAGCG
TGAGAAGGCCAAACAAGATGCCATCGCCGCCCAAAAGGTTGCCGAGCAAA
AAGAACTACAAATCAAGCGTGAAGGGGAACAAGCTGCGGCGGCCAGCCTG
CAGAGAGAACAGCGTGCGGCTGAAGAGCTTGCTAAGCTTTCCATCGCCCC
AGAGCAAAATGTGGAAGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCG
AGATGAAAGCCGCGGCTGAAGCGAAGGCGGCGGCTGAAGCGAAGGCGGCG
GCCGAAGCGAAGGCCAAGGCGGATGCAGCAGCAGCAGCAGCGGCAGCAAA
GAAGGAGGCCGAGTTGAAAGCCGCGGCTGAAGCAAAAGCGGCGGCCGAAG
CGAAGGCCAAGGCGGATGCAGAAGCAGCAGCAGCGGCAGCAGCCAAGAAG
GAAGCCGAGATGATAGCCGCGGCTGAAGCAAAAGCGGCGGCTGAAGCGAA
GGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAG
CCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCA
TCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGA
AGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAGCCAAGA
AGGAAGCCGAGATGAAAGCCGCGGCTGAAGCGAAGGCCAAGGCGGATGCA
GAGGCAGCAGCAGCGGCAGCAGCCAAGAAGGAAGCCGAGATGAAAGCCGC
GGCTGAAGCGAAGGCCAAGGCGGATGCAGAGGCAGCAGCAGCGGCAGCAG
CCAAGAAGGAAGCCGAGATGAAAGCCGCGGCTGAAGCTAAGGCCAAATCA
GATGCGGAAGACATACGCAAGCAAGAAAAAGCACAGGCATTCAAAACAAA
GCAAGCAGAGGAGGCTAGGGCGGCTGCTGAGAAGCGAGCTGATGCTGTCA
AGGCCAAGCGTGAGAAGGAGCAGGCGGAAGAGCGACAGCGTTTAATCAAG
GTGAAGGCAGCAAAGGAGGGCGCGGCAGCCAAACATGCTGAGATTGCCCA
GGCGCAAGCGAAGAAGAAGCAATTAGAAGTGCAAGCAAAGGCGGGTGCAA
AGACAAAGGCCCCTGCTCCTATTACCTCTGATGTTCCTAAGAATACCACT
CCTGCTTCTGTTGCTGCTCCTGAAGCTGTTCCGGCACCAAACAAGCCCGT
CGAGTTAAGCGCCGCAGAGCAGGCGGCTCAACGTGCACGACGAGAGGAGG
AGATTCGGGCCCGGGCACGAGAGACGCAAAAAGAGTTGTCGAAGCGGATG
GTGGCCGATTTGACCGAAAAATTGTCGATTCCCAAGTTGAAGGATTACTT
GAAGCAGAATAAGGTGAAGGGCCCGAAGAGTAGTGCGAAAAAGGCAGACT
TTGTGAGTGCTGCCTTGACTGTAGCGGAGACAAAAGGATGGGAAGCTTCA
GTGATGGAGTTGCAGAGTTTGAGCAGCGTGCAGGCCAAGGGGTTTGGGGG
TGGCGGGGCGTCGAAGGGAGATGCGAAGAAAAAGAAGTAA back to top
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