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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:814822..816648 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03140.1 vs.
Match: EWM28086.1 (suppressor of g2 allele of skp1 [Nannochloropsis gaditana]) HSP 1 Score: 395.2 bits (1014), Expect = 2.300e-106 Identity = 223/393 (56.74%), Postives = 278/393 (70.74%), Query Frame = 0
Query: 1 MEQAQQAFIDEEFARAEELYTVYLTTHPDDVIALASRAAVYLKLDKPPQAMQDAAKAATLKPDLEVAWYRQGLAAFALEDFARAKIAFMEGKQLLGEGTEPEGRKYATWLRKVAVEMEEGEE---------GVKE------ASSVTTTTTTREPAPLTTLKPTTAAALSMPVQPKYQYYQTPTHLTVTLLQKGLKEGEASVVIQPRQLTIKGNDGSTVLLKRQLFEAVIPEESVIIFFATKVEIKLKKVTEGLPWPDLSASSSSTNAASVPVLQPPLSSSSSPSSSVSYSSSKCSTSSKPLRPYASHKDWGAVEREITKELESEKPVGEEALNKLFKDIYSNASDDTRRAMVKSYQTSGGTVLSTNWGEVANKDYEKDEERKAPEGMEWRKWG 379
MEQAQ AF+DE++A A+EL++ Y+ THPDD AL SRAAV+LKL++P QA+ DA AA+LK DLEVAWYRQG+AAFALEDF+RAK AFM G+ LLG+ EP+GR+Y WLRK +E+ E +E G+KE A + T +P+P T P++A A+ K+Q+YQT +++TVT+L KGL+E +A+V +QPR L + L R LFE V+PEES FATKVE+KL+K EGL WP+L A S S AASV + P S + + + SSKPLRPYAS KDWGAVE+EI+KELESEKP G+EALN LF+DIY+ SD+TRRAMVKS+QTSGGTVLSTNW EV KDYEK+EERKAPEGMEWRKWG
Sbjct: 1 MEQAQLAFMDEDYATADELFSAYIATHPDDATALVSRAAVHLKLNQPSQALHDAEAAASLKSDLEVAWYRQGVAAFALEDFSRAKEAFMRGRALLGDRPEPQGRRYDVWLRKTTLELGEHDEQGMTVVAEGGIKELRQEQGAKGIEATVPRSQPSP--THPPSSAPAIPAG-HVKFQFYQTTSYVTVTILYKGLREEDANVSVQPRHLKVSVGADGDALFDRALFETVVPEESTSKIFATKVEVKLRKAMEGLTWPELCALSPSA-AASVHTVSAPTPDSHATALPSLAQGPATAPSSKPLRPYASTKDWGAVEKEISKELESEKPEGDEALNTLFRDIYAKGSDETRRAMVKSFQTSGGTVLSTNWEEVGKKDYEKEEERKAPEGMEWRKWG 389
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp CTCAGTCATCCGGGTTCCGACCAGCCAGAAGCCTCCCTCCGATTTTCTAG ACGCAATTTTTGTCTCACCACACTCCTTCCCATCCCAATATTCCACATGC GGGACAATCCCTTATATTTCCTGTACCTGAAGCCATGGAGCAAGCGCAGC AAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGAAGAGCTATACACCGTC TATCTCACCACTCACCCCGATGACGTCATCGCCCTTGCCTCCCGCGCTGC CGTATACCTGAAGCTGGACAAGCCGCCTCAAGCCATGCAAGACGCTGCGA AAGCTGCCACGCTCAAACCCGACTTGGAAGTGGCATGGTACCGCCAAGGA CTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGGCCAAAATCGCGTTCAT GGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAGCCGGAGGGGCGAAAGT ACGCGACATGGCTCCGCAAGGTGGCGGTTGAGATGGAGGAAGGGGAGGAA GGGGTGAAGGAGGCGTCCAGCGTCACCACCACCACTACCACAAGAGAGCC TGCGCCCCTCACCACGCTTAAACCCACGACTGCGGCCGCCTTATCTATGC CTGTGCAACCCAAATATCAATACTATCAGACCCCGACCCATCTGACTGTG ACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGGCTAGCGTGGTGATCCA GCCTCGTCAACTCACAATCAAGGGTAATGACGGAAGTACCGTGCTGCTAA AGAGACAGTTATTTGAGGCTGTAATTCCGGAGGAGAGTGTCATCATTTTT TTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAGTCACCGAAGGCTTGCC CTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACGAACGCTGCTTCCGTTC CTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTCTCCTTCATCGTCAGTT TCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCAAGCCGTTGCGGCCGTA CGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGGGAGATAACGAAGGAGC TGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTTGAACAAATTGTTCAAA GACATTTATTCCAATGCTAGCGACGATACACGCAGGGCAATGGTGAAGAG CTATCAGACGTCGGGTGGGACTGTGCTATCCACGAATTGGGGAGAGGTCG CCAACAAGGATTATGAAAAGGACGAGGAGAGAAAGGCACCCGAGGGGATG GAGTGGCGGAAGTGGGGATGAAGGGAGGGGTGGGATGAAGGGGCAAGAAT GGGCTTTGTCTTGTTAATTTGTGTATTTGTCTCTTTCTTGGGGGATGGGA CCAATATCAAAAAAAGATAATAGAGTCACCGGGAAATAGAAATAGTGGGA GGAAAGGCAATACAGGAATAAGTTGATGCTGATGCTGGAGCCGGTCGTGC AGGTGAGGCTGCACCAGCAAACTCACAGCTATCCCTCTCTTAGAGCCAAG ACTCCTAGTTTATGTGTTGTACGTGCATACAGACAAAACGACGAAAGAGG GAATCAATGAAGAAACGAAATAGGAGGAAAGGAGC back to topprotein sequence of NO05G03140.1 >NO05G03140.1-protein ID=NO05G03140.1-protein|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp MEQAQQAFIDEEFARAEELYTVYLTTHPDDVIALASRAAVYLKLDKPPQA MQDAAKAATLKPDLEVAWYRQGLAAFALEDFARAKIAFMEGKQLLGEGTE PEGRKYATWLRKVAVEMEEGEEGVKEASSVTTTTTTREPAPLTTLKPTTA AALSMPVQPKYQYYQTPTHLTVTLLQKGLKEGEASVVIQPRQLTIKGNDG STVLLKRQLFEAVIPEESVIIFFATKVEIKLKKVTEGLPWPDLSASSSST NAASVPVLQPPLSSSSSPSSSVSYSSSKCSTSSKPLRPYASHKDWGAVER EITKELESEKPVGEEALNKLFKDIYSNASDDTRRAMVKSYQTSGGTVLST NWGEVANKDYEKDEERKAPEGMEWRKWG* back to topmRNA from alignment at chr5:814822..816648- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at chr5:814822..816648- (Nannochloropsis oceanica) CTCAGTCATCCGGGTTCCGACCAGCCAGAAGCCTCCCTCCGATTTTCTAG
ACGCAATTTTTGTCTCACCACACTCCTTCCCATCCCAATATTCCACATGC
GGGACAATCCCTTATATTTCCTGTACCTGAAGCCATGGAGCAAGCGCAGC
AAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGAAGAGGTGCGTGCCCTC
CGCACTGTGGAAGGAATGGGGTTGAAAAAAAGAAAGTTGGCTGCATTTTT
CCTCCGCCTGGGACCTAAATCATACGCCAAAATTCCACCGCCCTGATTCT
GCTATATGTGGGTTTATGGCTGAGACTGGGCATGGCGCTTTCTATCCTCC
TCTTCTCCTTCCTCAAAGCCTTCCCTCCTCCCCTTGCTCCCTACCTCCCC
TCTCTTCCCTCCACCGACACACACCCATAGCTATACACCGTCTATCTCAC
CACTCACCCCGATGACGTCATCGCCCTTGCCTCCCGCGCTGCCGTATACC
TGAAGCTGGACAAGCCGCCTCAAGCCATGCAAGACGCTGCGAAAGCTGCC
ACGCTCAAACCCGACTTGGAAGTGGCATGGTACCGCCAAGGACTCGCTGC
CTTTGCTCTCGAGGACTTTGCGCGGGCCAAAATCGCGTTCATGGAAGGCA
AGCAGTTGTTGGGCGAGGGTACTGAGCCGGAGGGGCGAAAGTACGCGACA
TGGCTCCGCAAGGTGGCGGTTGAGATGGAGGAAGGGGAGGAAGGGGTGAA
GGAGGCGTCCAGCGTCACCACCACCACTACCACAAGAGAGCCTGCGCCCC
TCACCACGCTTAAACCCACGACTGCGGCCGCCTTATCTATGCCTGTGCAA
CCCAAATATCAATACTATCAGACCCCGACCCATCTGACTGTGACGCTCCT
CCAGAAGGGGCTGAAGGAAGGGGAGGCTAGCGTGGTGATCCAGCCTCGTC
AACTCACAATCAAGGGTAATGACGGAAGTACCGTGCTGCTAAAGAGACAG
TTATTTGAGGCTGTAATTCCGGAGGAGAGTGTCATCATTTTTTTTGCAAC
CAAAGTCGAAATCAAGCTCAAGAAAGTCACCGAAGGCTTGCCCTGGCCTG
ACTTGAGTGCTTCTTCCTCCTCGACGAACGCTGCTTCCGTTCCTGTTTTG
CAGCCGCCTCTCTCGTCTTCTTCTTCTCCTTCATCGTCAGTTTCTTACAG
TAGTAGTAAGTGCAGTACTAGCAGCAAGCCGTTGCGGCCGTACGCCAGCC
ATAAGGATTGGGGCGCGGTCGAGCGGGAGATAACGAAGGAGCTGGAGAGC
GAGAAGCCGGTAGGGGAGGAAGCGTTGAACAAATTGTTCAAAGACATTTA
TTCCAATGCTAGCGACGATACACGCAGGGCAATGGTGAAGAGCTATCAGA
CGTCGGGTGGGACTGTGCTATCCACGAATTGGGGAGAGGTCGCCAACAAG
GATTATGAAAAGGACGAGGAGAGAAAGGCACCCGAGGGGATGGAGTGGCG
GAAGTGGGGATGAAGGGAGGGGTGGGATGAAGGGGCAAGAATGGGCTTTG
TCTTGTTAATTTGTGTATTTGTCTCTTTCTTGGGGGATGGGACCAATATC
AAAAAAAGATAATAGAGTCACCGGGAAATAGAAATAGTGGGAGGAAAGGC
AATACAGGAATAAGTTGATGCTGATGCTGGAGCCGGTCGTGCAGGTGAGG
CTGCACCAGCAAACTCACAGCTATCCCTCTCTTAGAGCCAAGACTCCTAG
TTTATGTGTTGTACGTGCATACAGACAAAACGACGAAAGAGGGAATCAAT
GAAGAAACGAAATAGGAGGAAAGGAGC back to topCoding sequence (CDS) from alignment at chr5:814822..816648- >NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr5:814822..816648- (Nannochloropsis oceanica) ATGGAGCAAGCGCAGCAAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGA AGAGCTATACACCGTCTATCTCACCACTCACCCCGATGACGTCATCGCCC TTGCCTCCCGCGCTGCCGTATACCTGAAGCTGGACAAGCCGCCTCAAGCC ATGCAAGACGCTGCGAAAGCTGCCACGCTCAAACCCGACTTGGAAGTGGC ATGGTACCGCCAAGGACTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGG CCAAAATCGCGTTCATGGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAG CCGGAGGGGCGAAAGTACGCGACATGGCTCCGCAAGGTGGCGGTTGAGAT GGAGGAAGGGGAGGAAGGGGTGAAGGAGGCGTCCAGCGTCACCACCACCA CTACCACAAGAGAGCCTGCGCCCCTCACCACGCTTAAACCCACGACTGCG GCCGCCTTATCTATGCCTGTGCAACCCAAATATCAATACTATCAGACCCC GACCCATCTGACTGTGACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGG CTAGCGTGGTGATCCAGCCTCGTCAACTCACAATCAAGGGTAATGACGGA AGTACCGTGCTGCTAAAGAGACAGTTATTTGAGGCTGTAATTCCGGAGGA GAGTGTCATCATTTTTTTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAG TCACCGAAGGCTTGCCCTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACG AACGCTGCTTCCGTTCCTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTC TCCTTCATCGTCAGTTTCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCA AGCCGTTGCGGCCGTACGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGG GAGATAACGAAGGAGCTGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTT GAACAAATTGTTCAAAGACATTTATTCCAATGCTAGCGACGATACACGCA GGGCAATGGTGAAGAGCTATCAGACGTCGGGTGGGACTGTGCTATCCACG AATTGGGGAGAGGTCGCCAACAAGGATTATGAAAAGGACGAGGAGAGAAA GGCACCCGAGGGGATGGAGTGGCGGAAGTGGGGATGA back to top
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