NO05G03140.1, NO05G03140.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03140.1
Unique NameNO05G03140.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1585
Alignment locationchr5:814822..816648 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:814822..816648 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G03140.1 vs.
Match: EWM28086.1 (suppressor of g2 allele of skp1 [Nannochloropsis gaditana])

HSP 1 Score: 395.2 bits (1014), Expect = 2.300e-106
Identity = 223/393 (56.74%), Postives = 278/393 (70.74%), Query Frame = 0
Query:    1 MEQAQQAFIDEEFARAEELYTVYLTTHPDDVIALASRAAVYLKLDKPPQAMQDAAKAATLKPDLEVAWYRQGLAAFALEDFARAKIAFMEGKQLLGEGTEPEGRKYATWLRKVAVEMEEGEE---------GVKE------ASSVTTTTTTREPAPLTTLKPTTAAALSMPVQPKYQYYQTPTHLTVTLLQKGLKEGEASVVIQPRQLTIKGNDGSTVLLKRQLFEAVIPEESVIIFFATKVEIKLKKVTEGLPWPDLSASSSSTNAASVPVLQPPLSSSSSPSSSVSYSSSKCSTSSKPLRPYASHKDWGAVEREITKELESEKPVGEEALNKLFKDIYSNASDDTRRAMVKSYQTSGGTVLSTNWGEVANKDYEKDEERKAPEGMEWRKWG 379
            MEQAQ AF+DE++A A+EL++ Y+ THPDD  AL SRAAV+LKL++P QA+ DA  AA+LK DLEVAWYRQG+AAFALEDF+RAK AFM G+ LLG+  EP+GR+Y  WLRK  +E+ E +E         G+KE      A  +  T    +P+P  T  P++A A+      K+Q+YQT +++TVT+L KGL+E +A+V +QPR L +        L  R LFE V+PEES    FATKVE+KL+K  EGL WP+L A S S  AASV  +  P   S + +          + SSKPLRPYAS KDWGAVE+EI+KELESEKP G+EALN LF+DIY+  SD+TRRAMVKS+QTSGGTVLSTNW EV  KDYEK+EERKAPEGMEWRKWG
Sbjct:    1 MEQAQLAFMDEDYATADELFSAYIATHPDDATALVSRAAVHLKLNQPSQALHDAEAAASLKSDLEVAWYRQGVAAFALEDFSRAKEAFMRGRALLGDRPEPQGRRYDVWLRKTTLELGEHDEQGMTVVAEGGIKELRQEQGAKGIEATVPRSQPSP--THPPSSAPAIPAG-HVKFQFYQTTSYVTVTILYKGLREEDANVSVQPRHLKVSVGADGDALFDRALFETVVPEESTSKIFATKVEVKLRKAMEGLTWPELCALSPSA-AASVHTVSAPTPDSHATALPSLAQGPATAPSSKPLRPYASTKDWGAVEKEISKELESEKPEGDEALNTLFRDIYAKGSDETRRAMVKSFQTSGGTVLSTNWEEVGKKDYEKEEERKAPEGMEWRKWG 389          
The following BLAST results are available for this feature:
BLAST of NO05G03140.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28086.12.300e-10656.74suppressor of g2 allele of skp1 [Nannochloropsis g... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03140NO05G03140Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03140.1NO05G03140.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03140.1.cds1NO05G03140.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03140.1.cds2NO05G03140.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp
CTCAGTCATCCGGGTTCCGACCAGCCAGAAGCCTCCCTCCGATTTTCTAG
ACGCAATTTTTGTCTCACCACACTCCTTCCCATCCCAATATTCCACATGC
GGGACAATCCCTTATATTTCCTGTACCTGAAGCCATGGAGCAAGCGCAGC
AAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGAAGAGCTATACACCGTC
TATCTCACCACTCACCCCGATGACGTCATCGCCCTTGCCTCCCGCGCTGC
CGTATACCTGAAGCTGGACAAGCCGCCTCAAGCCATGCAAGACGCTGCGA
AAGCTGCCACGCTCAAACCCGACTTGGAAGTGGCATGGTACCGCCAAGGA
CTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGGCCAAAATCGCGTTCAT
GGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAGCCGGAGGGGCGAAAGT
ACGCGACATGGCTCCGCAAGGTGGCGGTTGAGATGGAGGAAGGGGAGGAA
GGGGTGAAGGAGGCGTCCAGCGTCACCACCACCACTACCACAAGAGAGCC
TGCGCCCCTCACCACGCTTAAACCCACGACTGCGGCCGCCTTATCTATGC
CTGTGCAACCCAAATATCAATACTATCAGACCCCGACCCATCTGACTGTG
ACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGGCTAGCGTGGTGATCCA
GCCTCGTCAACTCACAATCAAGGGTAATGACGGAAGTACCGTGCTGCTAA
AGAGACAGTTATTTGAGGCTGTAATTCCGGAGGAGAGTGTCATCATTTTT
TTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAGTCACCGAAGGCTTGCC
CTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACGAACGCTGCTTCCGTTC
CTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTCTCCTTCATCGTCAGTT
TCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCAAGCCGTTGCGGCCGTA
CGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGGGAGATAACGAAGGAGC
TGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTTGAACAAATTGTTCAAA
GACATTTATTCCAATGCTAGCGACGATACACGCAGGGCAATGGTGAAGAG
CTATCAGACGTCGGGTGGGACTGTGCTATCCACGAATTGGGGAGAGGTCG
CCAACAAGGATTATGAAAAGGACGAGGAGAGAAAGGCACCCGAGGGGATG
GAGTGGCGGAAGTGGGGATGAAGGGAGGGGTGGGATGAAGGGGCAAGAAT
GGGCTTTGTCTTGTTAATTTGTGTATTTGTCTCTTTCTTGGGGGATGGGA
CCAATATCAAAAAAAGATAATAGAGTCACCGGGAAATAGAAATAGTGGGA
GGAAAGGCAATACAGGAATAAGTTGATGCTGATGCTGGAGCCGGTCGTGC
AGGTGAGGCTGCACCAGCAAACTCACAGCTATCCCTCTCTTAGAGCCAAG
ACTCCTAGTTTATGTGTTGTACGTGCATACAGACAAAACGACGAAAGAGG
GAATCAATGAAGAAACGAAATAGGAGGAAAGGAGC
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protein sequence of NO05G03140.1

>NO05G03140.1-protein ID=NO05G03140.1-protein|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=polypeptide|length=379bp
MEQAQQAFIDEEFARAEELYTVYLTTHPDDVIALASRAAVYLKLDKPPQA
MQDAAKAATLKPDLEVAWYRQGLAAFALEDFARAKIAFMEGKQLLGEGTE
PEGRKYATWLRKVAVEMEEGEEGVKEASSVTTTTTTREPAPLTTLKPTTA
AALSMPVQPKYQYYQTPTHLTVTLLQKGLKEGEASVVIQPRQLTIKGNDG
STVLLKRQLFEAVIPEESVIIFFATKVEIKLKKVTEGLPWPDLSASSSST
NAASVPVLQPPLSSSSSPSSSVSYSSSKCSTSSKPLRPYASHKDWGAVER
EITKELESEKPVGEEALNKLFKDIYSNASDDTRRAMVKSYQTSGGTVLST
NWGEVANKDYEKDEERKAPEGMEWRKWG*
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mRNA from alignment at chr5:814822..816648-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=mRNA|length=1827bp|location=Sequence derived from alignment at chr5:814822..816648- (Nannochloropsis oceanica)
CTCAGTCATCCGGGTTCCGACCAGCCAGAAGCCTCCCTCCGATTTTCTAG ACGCAATTTTTGTCTCACCACACTCCTTCCCATCCCAATATTCCACATGC GGGACAATCCCTTATATTTCCTGTACCTGAAGCCATGGAGCAAGCGCAGC AAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGAAGAGGTGCGTGCCCTC CGCACTGTGGAAGGAATGGGGTTGAAAAAAAGAAAGTTGGCTGCATTTTT CCTCCGCCTGGGACCTAAATCATACGCCAAAATTCCACCGCCCTGATTCT GCTATATGTGGGTTTATGGCTGAGACTGGGCATGGCGCTTTCTATCCTCC TCTTCTCCTTCCTCAAAGCCTTCCCTCCTCCCCTTGCTCCCTACCTCCCC TCTCTTCCCTCCACCGACACACACCCATAGCTATACACCGTCTATCTCAC CACTCACCCCGATGACGTCATCGCCCTTGCCTCCCGCGCTGCCGTATACC TGAAGCTGGACAAGCCGCCTCAAGCCATGCAAGACGCTGCGAAAGCTGCC ACGCTCAAACCCGACTTGGAAGTGGCATGGTACCGCCAAGGACTCGCTGC CTTTGCTCTCGAGGACTTTGCGCGGGCCAAAATCGCGTTCATGGAAGGCA AGCAGTTGTTGGGCGAGGGTACTGAGCCGGAGGGGCGAAAGTACGCGACA TGGCTCCGCAAGGTGGCGGTTGAGATGGAGGAAGGGGAGGAAGGGGTGAA GGAGGCGTCCAGCGTCACCACCACCACTACCACAAGAGAGCCTGCGCCCC TCACCACGCTTAAACCCACGACTGCGGCCGCCTTATCTATGCCTGTGCAA CCCAAATATCAATACTATCAGACCCCGACCCATCTGACTGTGACGCTCCT CCAGAAGGGGCTGAAGGAAGGGGAGGCTAGCGTGGTGATCCAGCCTCGTC AACTCACAATCAAGGGTAATGACGGAAGTACCGTGCTGCTAAAGAGACAG TTATTTGAGGCTGTAATTCCGGAGGAGAGTGTCATCATTTTTTTTGCAAC CAAAGTCGAAATCAAGCTCAAGAAAGTCACCGAAGGCTTGCCCTGGCCTG ACTTGAGTGCTTCTTCCTCCTCGACGAACGCTGCTTCCGTTCCTGTTTTG CAGCCGCCTCTCTCGTCTTCTTCTTCTCCTTCATCGTCAGTTTCTTACAG TAGTAGTAAGTGCAGTACTAGCAGCAAGCCGTTGCGGCCGTACGCCAGCC ATAAGGATTGGGGCGCGGTCGAGCGGGAGATAACGAAGGAGCTGGAGAGC GAGAAGCCGGTAGGGGAGGAAGCGTTGAACAAATTGTTCAAAGACATTTA TTCCAATGCTAGCGACGATACACGCAGGGCAATGGTGAAGAGCTATCAGA CGTCGGGTGGGACTGTGCTATCCACGAATTGGGGAGAGGTCGCCAACAAG GATTATGAAAAGGACGAGGAGAGAAAGGCACCCGAGGGGATGGAGTGGCG GAAGTGGGGATGAAGGGAGGGGTGGGATGAAGGGGCAAGAATGGGCTTTG TCTTGTTAATTTGTGTATTTGTCTCTTTCTTGGGGGATGGGACCAATATC AAAAAAAGATAATAGAGTCACCGGGAAATAGAAATAGTGGGAGGAAAGGC AATACAGGAATAAGTTGATGCTGATGCTGGAGCCGGTCGTGCAGGTGAGG CTGCACCAGCAAACTCACAGCTATCCCTCTCTTAGAGCCAAGACTCCTAG TTTATGTGTTGTACGTGCATACAGACAAAACGACGAAAGAGGGAATCAAT GAAGAAACGAAATAGGAGGAAAGGAGC
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Coding sequence (CDS) from alignment at chr5:814822..816648-

>NO05G03140.1 ID=NO05G03140.1|Name=NO05G03140.1|organism=Nannochloropsis oceanica|type=CDS|length=1137bp|location=Sequence derived from alignment at chr5:814822..816648- (Nannochloropsis oceanica)
ATGGAGCAAGCGCAGCAAGCGTTCATAGACGAGGAGTTTGCCAGGGCCGA
AGAGCTATACACCGTCTATCTCACCACTCACCCCGATGACGTCATCGCCC
TTGCCTCCCGCGCTGCCGTATACCTGAAGCTGGACAAGCCGCCTCAAGCC
ATGCAAGACGCTGCGAAAGCTGCCACGCTCAAACCCGACTTGGAAGTGGC
ATGGTACCGCCAAGGACTCGCTGCCTTTGCTCTCGAGGACTTTGCGCGGG
CCAAAATCGCGTTCATGGAAGGCAAGCAGTTGTTGGGCGAGGGTACTGAG
CCGGAGGGGCGAAAGTACGCGACATGGCTCCGCAAGGTGGCGGTTGAGAT
GGAGGAAGGGGAGGAAGGGGTGAAGGAGGCGTCCAGCGTCACCACCACCA
CTACCACAAGAGAGCCTGCGCCCCTCACCACGCTTAAACCCACGACTGCG
GCCGCCTTATCTATGCCTGTGCAACCCAAATATCAATACTATCAGACCCC
GACCCATCTGACTGTGACGCTCCTCCAGAAGGGGCTGAAGGAAGGGGAGG
CTAGCGTGGTGATCCAGCCTCGTCAACTCACAATCAAGGGTAATGACGGA
AGTACCGTGCTGCTAAAGAGACAGTTATTTGAGGCTGTAATTCCGGAGGA
GAGTGTCATCATTTTTTTTGCAACCAAAGTCGAAATCAAGCTCAAGAAAG
TCACCGAAGGCTTGCCCTGGCCTGACTTGAGTGCTTCTTCCTCCTCGACG
AACGCTGCTTCCGTTCCTGTTTTGCAGCCGCCTCTCTCGTCTTCTTCTTC
TCCTTCATCGTCAGTTTCTTACAGTAGTAGTAAGTGCAGTACTAGCAGCA
AGCCGTTGCGGCCGTACGCCAGCCATAAGGATTGGGGCGCGGTCGAGCGG
GAGATAACGAAGGAGCTGGAGAGCGAGAAGCCGGTAGGGGAGGAAGCGTT
GAACAAATTGTTCAAAGACATTTATTCCAATGCTAGCGACGATACACGCA
GGGCAATGGTGAAGAGCTATCAGACGTCGGGTGGGACTGTGCTATCCACG
AATTGGGGAGAGGTCGCCAACAAGGATTATGAAAAGGACGAGGAGAGAAA
GGCACCCGAGGGGATGGAGTGGCGGAAGTGGGGATGA
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Synonyms
Publications