NO05G03130.1, NO05G03130.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03130.1
Unique NameNO05G03130.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1294
Alignment locationchr5:813254..814816 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:813254..814816 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03130.1 vs.
Match: EWM28082.1 (uncharacterized protein Naga_100120g17 [Nannochloropsis gaditana])

HSP 1 Score: 457.6 bits (1176), Expect = 3.600e-125
Identity = 234/364 (64.29%), Postives = 275/364 (75.55%), Query Frame = 0 
Query:    1 MSSFLSRLRQRVLRFSVRQRDLQEKADIETALLLTSWWNHIVLQGQEDRSVLQQEAERVQQMAGFQQVRTLKENLDTQVLRMFKAIHAARKIQ--TDPAKLCEIYGQSQKGSNDENDPTPQHPQHYQEVENWHPPKGARGRQQASMHSRGGTGSREEYRGRADVDSVRKALRQQLGFTLRRGPSTIPMAGEGIFLEGRVRIGTMVGLYPGLVYLQEHVRKPEEVAQLFPDPDMFLFQRYDRVMVDGRAAEEQQPNEYALAHLCNHGKPNVMALAYDFAQDPLDWGGFPKELRPYIPNSYTRPRSLLGSPDQSALMQSVVLLTTTDVEDGEELLLNYRLNPKHGKESLPSWYVPVDVEEDSRRWA 363
            MSS L+RLRQ  LR+SVRQRDLQE+ADIETALLLTSWW  I +  QEDR  LQQEAER+Q MAG++QV  L++NLD Q+LRMF AI AAR ++  T  +++   + +   G+              Q  E+W PP   R  Q +S+  RG     E  R  A    V K+LRQ LGFTL  GPS+I  AG G+FLEGR RIG++VG+YPGLVYL EH+RK EEVA+LFPDPD+FLFQRYD+++VDGRAAE+   NEYALAHLCNHGKPNVMA+AYDF QDPL WGGFP ELRPYIPN++ RPRSLLGSPDQSAL+QSVVL+ TTD+EDGEEL LNYRLNPKHG ESLP WYVPVD +ED RRWA
Sbjct:    1 MSSILNRLRQSFLRYSVRQRDLQEQADIETALLLTSWWKCITIGHQEDRQTLQQEAERMQSMAGYKQVNILRKNLDQQILRMFLAIDAARTVEETTKASRMHHGFEEINGGTGGST----------QAREDWRPPNRRRRPQTSSISRRGEREDMESARESARRGRVFKSLRQDLGFTLCHGPSSILSAGRGVFLEGRARIGSLVGIYPGLVYLPEHLRKAEEVAELFPDPDIFLFQRYDKIVVDGRAAEKMPHNEYALAHLCNHGKPNVMAVAYDFPQDPLGWGGFPHELRPYIPNAFARPRSLLGSPDQSALIQSVVLVATTDLEDGEELFLNYRLNPKHGSESLPPWYVPVDAKEDQRRWA 354
The following BLAST results are available for this feature:
BLAST of NO05G03130.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28082.13.600e-12564.29uncharacterized protein Naga_100120g17 [Nannochlor... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03130NO05G03130Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03130.1NO05G03130.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03130.1.cds1NO05G03130.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03130.1.cds2NO05G03130.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03130.1 ID=NO05G03130.1|Name=NO05G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1294bp
AGGGCCACATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGT
TTCAGTGTCCGGCAGCGGGACCTGCAGGAAAAAGCGGACATTGAAACCGC
TTTGTTACTCACGTCATGGTGGAACCATATCGTGCTACAAGGGCAAGAGG
ACCGAAGTGTGCTGCAGCAAGAAGCGGAGCGTGTGCAACAAATGGCGGGC
TTTCAGCAAGTGAGGACCCTCAAAGAAAACCTCGACACCCAGGTCCTGCG
CATGTTCAAGGCTATACACGCGGCGCGCAAGATTCAAACAGACCCAGCAA
AACTATGTGAGATTTATGGACAAAGCCAGAAAGGCAGCAACGACGAAAAT
GACCCCACCCCTCAACATCCCCAGCACTACCAAGAAGTGGAAAATTGGCA
TCCACCCAAAGGCGCGCGGGGACGACAACAGGCCTCCATGCATTCGCGTG
GAGGAACTGGCAGCAGGGAAGAATACAGGGGCCGTGCCGACGTGGATTCG
GTGCGCAAGGCGTTGCGGCAGCAGTTGGGGTTCACGCTCCGCCGAGGGCC
CTCCACCATCCCCATGGCTGGGGAGGGCATTTTCCTAGAGGGCCGCGTTC
GGATTGGGACGATGGTGGGTTTATATCCCGGCTTGGTTTATTTGCAAGAG
CATGTGCGGAAGCCGGAGGAGGTTGCACAACTTTTCCCTGACCCGGACAT
GTTTTTGTTTCAGAGGTATGATAGGGTTATGGTGGATGGACGGGCAGCAG
AGGAGCAACAGCCGAATGAGTATGCCTTGGCCCATCTTTGTAATCACGGT
AAACCAAACGTTATGGCTTTGGCTTATGATTTCGCGCAGGATCCATTAGA
TTGGGGCGGGTTTCCGAAGGAATTAAGACCTTATATTCCTAATAGCTACA
CGCGGCCTCGTTCGTTGCTGGGAAGTCCGGATCAATCAGCGTTGATGCAG
TCGGTGGTGCTGCTGACGACGACAGATGTGGAGGATGGGGAGGAGCTGTT
GTTGAATTATCGGTTGAATCCGAAGCATGGTAAGGAGAGCTTGCCATCTT
GGTATGTGCCCGTGGATGTGGAGGAGGACTCTCGACGGTGGGCGTGAAGA
GGATACAATTAGGAGGAAGGTGGGCGGCAGGGAAAAAGGACACGTACTTG
TGTAAGAGAAAAAGCACTTTGTTTCAATACAAATATGGAAGAGGGCAGGC
TCACCAGATACTATGGTGGAGTTTGGGCTCGTTTCAATGGGAAAGACACC
CAAAGCAAAAACTACCAACATATACACGCGTGACAAAGTGTAAA
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protein sequence of NO05G03130.1

>NO05G03130.1-protein ID=NO05G03130.1-protein|Name=NO05G03130.1|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MSSFLSRLRQRVLRFSVRQRDLQEKADIETALLLTSWWNHIVLQGQEDRS
VLQQEAERVQQMAGFQQVRTLKENLDTQVLRMFKAIHAARKIQTDPAKLC
EIYGQSQKGSNDENDPTPQHPQHYQEVENWHPPKGARGRQQASMHSRGGT
GSREEYRGRADVDSVRKALRQQLGFTLRRGPSTIPMAGEGIFLEGRVRIG
TMVGLYPGLVYLQEHVRKPEEVAQLFPDPDMFLFQRYDRVMVDGRAAEEQ
QPNEYALAHLCNHGKPNVMALAYDFAQDPLDWGGFPKELRPYIPNSYTRP
RSLLGSPDQSALMQSVVLLTTTDVEDGEELLLNYRLNPKHGKESLPSWYV
PVDVEEDSRRWA*
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mRNA from alignment at chr5:813254..814816+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03130.1 ID=NO05G03130.1|Name=NO05G03130.1|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp|location=Sequence derived from alignment at chr5:813254..814816+ (Nannochloropsis oceanica)
AGGGCCACATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGT
TTCAGTGTCCGGCAGCGGGACCTGCAGGTAAAAAGACAATATCTTGCGTT
CCCCCAGCCCATTTCAATACCCTCCCATGCTCAAGCGCTTGCACACATGC
AAGCAGAGGCTAATATGTGATTCAGAACGTGTCCTTGTTCTCTCTCCCCC
TGTACCAGAGTAAGCTATACCAAACTCTCTCCGTCCCTCTGTCCCGCCTC
CACTCCATCACGGTGCCCTCCCTACCTCTCTGAAACCCTCCTCAATCAGA
AAGCGCCACACTTCCCAACTGCCCCACTTTTCACAATATCTCACAGGAAA
AAGCGGACATTGAAACCGCTTTGTTACTCACGTCATGGTGGAACCATATC
GTGCTACAAGGGCAAGAGGACCGAAGTGTGCTGCAGCAAGAAGCGGAGCG
TGTGCAACAAATGGCGGGCTTTCAGCAAGTGAGGACCCTCAAAGAAAACC
TCGACACCCAGGTCCTGCGCATGTTCAAGGCTATACACGCGGCGCGCAAG
ATTCAAACAGACCCAGCAAAACTATGTGAGATTTATGGACAAAGCCAGAA
AGGCAGCAACGACGAAAATGACCCCACCCCTCAACATCCCCAGCACTACC
AAGAAGTGGAAAATTGGCATCCACCCAAAGGCGCGCGGGGACGACAACAG
GCCTCCATGCATTCGCGTGGAGGAACTGGCAGCAGGGAAGAATACAGGGG
CCGTGCCGACGTGGATTCGGTGCGCAAGGCGTTGCGGCAGCAGTTGGGGT
TCACGCTCCGCCGAGGGCCCTCCACCATCCCCATGGCTGGGGAGGGCATT
TTCCTAGAGGGCCGCGTTCGGATTGGGACGATGGTGGGTTTATATCCCGG
CTTGGTTTATTTGCAAGAGCATGTGCGGAAGCCGGAGGAGGTTGCACAAC
TTTTCCCTGACCCGGACATGTTTTTGTTTCAGAGGTATGATAGGGTTATG
GTGGATGGACGGGCAGCAGAGGAGCAACAGCCGAATGAGTATGCCTTGGC
CCATCTTTGTAATCACGGTAAACCAAACGTTATGGCTTTGGCTTATGATT
TCGCGCAGGATCCATTAGATTGGGGCGGGTTTCCGAAGGAATTAAGACCT
TATATTCCTAATAGCTACACGCGGCCTCGTTCGTTGCTGGGAAGTCCGGA
TCAATCAGCGTTGATGCAGTCGGTGGTGCTGCTGACGACGACAGATGTGG
AGGATGGGGAGGAGCTGTTGTTGAATTATCGGTTGAATCCGAAGCATGGT
AAGGAGAGCTTGCCATCTTGGTATGTGCCCGTGGATGTGGAGGAGGACTC
TCGACGGTGGGCGTGAAGAGGATACAATTAGGAGGAAGGTGGGCGGCAGG
GAAAAAGGACACGTACTTGTGTAAGAGAAAAAGCACTTTGTTTCAATACA
AATATGGAAGAGGGCAGGCTCACCAGATACTATGGTGGAGTTTGGGCTCG
TTTCAATGGGAAAGACACCCAAAGCAAAAACTACCAACATATACACGCGT
GACAAAGTGTAAA
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Coding sequence (CDS) from alignment at chr5:813254..814816+

>NO05G03130.1 ID=NO05G03130.1|Name=NO05G03130.1|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at chr5:813254..814816+ (Nannochloropsis oceanica)
ATGTCATCCTTCCTGAGCCGGCTGCGGCAGAGAGTTTTGCGTTTCAGTGT
CCGGCAGCGGGACCTGCAGGAAAAAGCGGACATTGAAACCGCTTTGTTAC
TCACGTCATGGTGGAACCATATCGTGCTACAAGGGCAAGAGGACCGAAGT
GTGCTGCAGCAAGAAGCGGAGCGTGTGCAACAAATGGCGGGCTTTCAGCA
AGTGAGGACCCTCAAAGAAAACCTCGACACCCAGGTCCTGCGCATGTTCA
AGGCTATACACGCGGCGCGCAAGATTCAAACAGACCCAGCAAAACTATGT
GAGATTTATGGACAAAGCCAGAAAGGCAGCAACGACGAAAATGACCCCAC
CCCTCAACATCCCCAGCACTACCAAGAAGTGGAAAATTGGCATCCACCCA
AAGGCGCGCGGGGACGACAACAGGCCTCCATGCATTCGCGTGGAGGAACT
GGCAGCAGGGAAGAATACAGGGGCCGTGCCGACGTGGATTCGGTGCGCAA
GGCGTTGCGGCAGCAGTTGGGGTTCACGCTCCGCCGAGGGCCCTCCACCA
TCCCCATGGCTGGGGAGGGCATTTTCCTAGAGGGCCGCGTTCGGATTGGG
ACGATGGTGGGTTTATATCCCGGCTTGGTTTATTTGCAAGAGCATGTGCG
GAAGCCGGAGGAGGTTGCACAACTTTTCCCTGACCCGGACATGTTTTTGT
TTCAGAGGTATGATAGGGTTATGGTGGATGGACGGGCAGCAGAGGAGCAA
CAGCCGAATGAGTATGCCTTGGCCCATCTTTGTAATCACGGTAAACCAAA
CGTTATGGCTTTGGCTTATGATTTCGCGCAGGATCCATTAGATTGGGGCG
GGTTTCCGAAGGAATTAAGACCTTATATTCCTAATAGCTACACGCGGCCT
CGTTCGTTGCTGGGAAGTCCGGATCAATCAGCGTTGATGCAGTCGGTGGT
GCTGCTGACGACGACAGATGTGGAGGATGGGGAGGAGCTGTTGTTGAATT
ATCGGTTGAATCCGAAGCATGGTAAGGAGAGCTTGCCATCTTGGTATGTG
CCCGTGGATGTGGAGGAGGACTCTCGACGGTGGGCGTGA
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Synonyms
Publications