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Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| chr5 | genome | chr5:798870..801397 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G03090.1 vs.
Match: EWM28099.1 (iduronate-2-sulfatase [Nannochloropsis gaditana]) HSP 1 Score: 936.8 bits (2420), Expect = 3.600e-269 Identity = 440/609 (72.25%), Postives = 501/609 (82.27%), Query Frame = 0
Query: 30 VVGLAVAMCILHLHIYMDPTLSRTGTQARESSPGNIEQQPVDNSFAATNGLKAHAPPVPSRKQ--EDG---EDLLSLANPYAGRDNPFAARTDRDKTRKKNVLFIMTDDLRPSLSVYDKPVISPGIERLAKGGVVFERNYNQDPICNPSRDSMLSGRRPDTTQTWLFESIVPHKYSNIFRYFKEEGGYKVLGTGKLWHWTSTYLDDFHNDYFPPNSDDWNSGTDENYSMMNASVQPDKNWPEERYWDFRIASEGISLMQGAADTIDTQPFFLGVGFHQPHRPWHMPQKYWDLYDKVPVPVTPHSTWPVDAPVVATGDINPAEIGMLPDSSKRYLANPDGGIPEDAIRENVRGYHASISFLDHQIQRLLDEMERLKLVEDTIIVFCVDHGMNIGDHGMWDKRTLFETNARVPLIIRDPDFPESFGTNASALAENVDIFPTLIEMAGLPDPAGRLFPPLEGKSLVPILADPAMGSVKDFAMTQIARCCSSGCGSEKVEKVNYLKWEVCKGGNWEWNELNERVYMGYSMRTDEWRYTVWVPFDAPSRAPQWGQPLGGEELYDHRDPRCNEKGNFDMCETRNVAKDASLKKIKAELFMKLRSIVDENNLKHWK 634
V+ + V M + ++++Y+ PT SR G +SS V++ F+ N K A SR Q +D ED SLA PYAGR NPF++ RD+T++KNVLFIMTDDLRPSLS+Y+KPVI+PG ERLAKGGVVFERNYNQDPICNPSR+S+LSGRRPDTT+ WLFE V Y NIFRYFK+EGGYK+LGTGKLWHWTS+++++F N YFP ++D WN GTDENY MMNASVQPD NWPEER+WD+RIASEGISLM+ A +T D PFFLGVGFHQPHRPWHMPQKYWDLY+ VPVTPH+TWP+DAP VATGDINP EIGMLPDS K Y+A+P G +P DAIRENVRGYHASISFLDHQIQRLLDE+ERL LVEDTIIVFC DHGMNIGDHGMWDKRTLFETNARVPLIIRDPD PESFG NASALAENVDIFPT+IEMAGLPDPAGRLFPPLEGKSLVP+L DP G VKDFA+TQI RCCS GCG+ ++KV + WEVC GGN +WN+LNERVYMGYSMRTDEWRYT WVPF+A + P+W Q GGEELYDHRDPRCNEKGNFD CETRN+AKD SL+ +K EL+ K+RSIVD N K WK
Sbjct: 71 VLVILVIMGLSNVYLYLGPTHSRRGIFTTDSS--------VNDGFSEANEHKLSARHPRSRPQLVDDPIVKEDTPSLAYPYAGRGNPFSSHKTRDRTKRKNVLFIMTDDLRPSLSIYNKPVITPGFERLAKGGVVFERNYNQDPICNPSRNSLLSGRRPDTTKVWLFEDTVASDYGNIFRYFKKEGGYKMLGTGKLWHWTSSFIEEFDNKYFPKSTDAWNDGTDENYQMMNASVQPDDNWPEERFWDYRIASEGISLMREAVNTKDGNPFFLGVGFHQPHRPWHMPQKYWDLYEDRYVPVTPHTTWPIDAPGVATGDINPLEIGMLPDSEKTYVADPTGRVPSDAIRENVRGYHASISFLDHQIQRLLDELERLSLVEDTIIVFCADHGMNIGDHGMWDKRTLFETNARVPLIIRDPDIPESFGMNASALAENVDIFPTMIEMAGLPDPAGRLFPPLEGKSLVPVLRDPVNGRVKDFALTQIPRCCSQGCGNRPLKKVPWFAWEVCSGGNRDWNDLNERVYMGYSMRTDEWRYTAWVPFNASTHTPEWTQAWGGEELYDHRDPRCNEKGNFDSCETRNMAKDVSLQLVKKELYAKMRSIVDTYNYKQWK 671
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G03090.1 ID=NO05G03090.1|Name=NO05G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp
CCGGGCCCTTGCGGCCCATGACCGGCACATTTTCTCTCCCCCCGCAGGGC
AGGCCCTGCCGCCCTTCTTGTACAGACGCTTCCGGCAATGGTGTTGTTTG
ACTTACGTAGTGGTGACGGCTGAACATCTAGCTCCCCGCCGACAACTCAA
GCGACAAGCAAGGCCGCCTTGGCTAATGCACATCATCATCCAAATCCCGT
ATACTCACAACTCACGCAACATAAAAACTATACATTTGTGTGGTTCCATG
CACAGAATATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGC
CCCGATCTCTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGT
AGGACTAGCCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATC
CCACATTATCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAAT
ATAGAACAGCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAA
GGCACATGCTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACC
TGTTGTCCCTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCG
CGCACGGACCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGAC
GGATGATCTGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCC
CTGGGATCGAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTAC
AATCAAGACCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAG
GAGACCCGATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACA
AGTACAGTAACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTG
TTGGGGACGGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTT
TCACAATGATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAG
ACGAGAATTATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGG
CCAGAAGAGCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACT
CATGCAAGGCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTG
TCGGCTTCCATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGG
GATTTATATGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCC
TGTTGATGCCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCG
GCATGTTGCCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGT
ATTCCTGAAGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAAT
TTCATTTCTAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGT
TGAAATTGGTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATG
AACATTGGGGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAA
TGCGAGAGTCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTG
GGACGAATGCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTG
ATTGAAATGGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTT
GGAAGGAAAAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTG
TAAAGGATTTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGC
GGGAGTGAGAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAA
GGGAGGAAATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGAT
ACTCGATGCGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGAT
GCGCCATCGCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATT
GTATGATCATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGT
GTGAGACAAGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCA
GAGTTGTTCATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCA
TTGGAAGGATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATG
AGAAGTAGAGGTTTAGGCGTGATGATAGTTGTGTATCGTAATGGACTTTT
GGTGAATATAAAGAAGAGAAGGAAGCCATAGCGCGCATGTAAGCTACCAA
CATTTAAATACAATTCTCTGAGTGCAATAAGCAGAGAGGAAGTGTGTGTG
TGTGTGTGATCGAGGGAGGAGACAGTGTGCTCGCAAAGTCTAAGGGTTTA
GAAAAAACACAAATTTCGTCAATTTCTTGCCATTTCCCCCTTTTCCAGTC
TTAGAAATATATCTATCTGGAGCAGTTACCCTCCCAACAACAATAATACA
CCAAAATTAATTATGTTATACTTACAGC back to topprotein sequence of NO05G03090.1 >NO05G03090.1-protein ID=NO05G03090.1-protein|Name=NO05G03090.1|organism=Nannochloropsis oceanica|type=polypeptide|length=650bp
MPLDGPSRRVWHYCPDLWCHRRGPFIRCSVVGLAVAMCILHLHIYMDPTL
SRTGTQARESSPGNIEQQPVDNSFAATNGLKAHAPPVPSRKQEDGEDLLS
LANPYAGRDNPFAARTDRDKTRKKNVLFIMTDDLRPSLSVYDKPVISPGI
ERLAKGGVVFERNYNQDPICNPSRDSMLSGRRPDTTQTWLFESIVPHKYS
NIFRYFKEEGGYKVLGTGKLWHWTSTYLDDFHNDYFPPNSDDWNSGTDEN
YSMMNASVQPDKNWPEERYWDFRIASEGISLMQGAADTIDTQPFFLGVGF
HQPHRPWHMPQKYWDLYDKVPVPVTPHSTWPVDAPVVATGDINPAEIGML
PDSSKRYLANPDGGIPEDAIRENVRGYHASISFLDHQIQRLLDEMERLKL
VEDTIIVFCVDHGMNIGDHGMWDKRTLFETNARVPLIIRDPDFPESFGTN
ASALAENVDIFPTLIEMAGLPDPAGRLFPPLEGKSLVPILADPAMGSVKD
FAMTQIARCCSSGCGSEKVEKVNYLKWEVCKGGNWEWNELNERVYMGYSM
RTDEWRYTVWVPFDAPSRAPQWGQPLGGEELYDHRDPRCNEKGNFDMCET
RNVAKDASLKKIKAELFMKLRSIVDENNLKHWKDEWEKEEGLRKTKNEK* back to topmRNA from alignment at chr5:798870..801397- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G03090.1 ID=NO05G03090.1|Name=NO05G03090.1|organism=Nannochloropsis oceanica|type=mRNA|length=2528bp|location=Sequence derived from alignment at chr5:798870..801397- (Nannochloropsis oceanica)
CCGGGCCCTTGCGGCCCATGACCGGCACATTTTCTCTCCCCCCGCAGGGC
AGGCCCTGCCGCCCTTCTTGTACAGACGCTTCCGGCAATGGTGTTGTTTG
ACTTACGTAGTGGTGACGGCTGAACATCTAGCTCCCCGCCGACAACTCAA
GCGACAAGCAAGGCCGCCTTGGCTAATGCACATCATCATCCAAATCCCGT
ATACTCACAACTCACGCAACATAAAAACTATACATTTGTGTGGTTCCATG
CACAGAATATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGC
CCCGATCTCTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGT
AGGACTAGCCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATC
CCACATTATCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAAT
ATAGAACAGCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAA
GGCACATGCTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACC
TGTTGTCCCTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCG
CGCACGGACCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGAC
GGATGATCTGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCC
CTGGGATCGAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTAC
AATCAAGACCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAG
GAGACCCGATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACA
AGTACAGTAACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTG
TTGGGGACGGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTT
TCACAATGATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAG
ACGAGAATTATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGG
CCAGAAGAGCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACT
CATGCAAGGCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTG
TCGGCTTCCATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGG
GATTTATATGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCC
TGTTGATGCCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCG
GCATGTTGCCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGT
ATTCCTGAAGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAAT
TTCATTTCTAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGT
TGAAATTGGTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATG
AACATTGGGGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAA
TGCGAGAGTCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTG
GGACGAATGCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTG
ATTGAAATGGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTT
GGAAGGAAAAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTG
TAAAGGATTTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGC
GGGAGTGAGAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAA
GGGAGGAAATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGAT
ACTCGATGCGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGAT
GCGCCATCGCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATT
GTATGATCATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGT
GTGAGACAAGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCA
GAGTTGTTCATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCA
TTGGAAGGATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATG
AGAAGTAGAGGTTTAGGCGTGATGATAGTTGTGTATCGTAATGGACTTTT
GGTGAATATAAAGAAGAGAAGGAAGCCATAGCGCGCATGTAAGCTACCAA
CATTTAAATACAATTCTCTGAGTGCAATAAGCAGAGAGGAAGTGTGTGTG
TGTGTGTGATCGAGGGAGGAGACAGTGTGCTCGCAAAGTCTAAGGGTTTA
GAAAAAACACAAATTTCGTCAATTTCTTGCCATTTCCCCCTTTTCCAGTC
TTAGAAATATATCTATCTGGAGCAGTTACCCTCCCAACAACAATAATACA
CCAAAATTAATTATGTTATACTTACAGC back to topCoding sequence (CDS) from alignment at chr5:798870..801397- >NO05G03090.1 ID=NO05G03090.1|Name=NO05G03090.1|organism=Nannochloropsis oceanica|type=CDS|length=1950bp|location=Sequence derived from alignment at chr5:798870..801397- (Nannochloropsis oceanica)
ATGCCGTTGGACGGCCCCTCTCGTAGGGTATGGCACTACTGCCCCGATCT
CTGGTGCCATCGCAGGGGGCCCTTCATCCGTTGTTCAGTCGTAGGACTAG
CCGTCGCCATGTGCATCCTGCATCTCCACATTTACATGGATCCCACATTA
TCCCGAACCGGGACCCAAGCTCGAGAGAGCAGCCCTGGCAATATAGAACA
GCAACCAGTCGACAACAGCTTTGCCGCGACCAACGGGCTTAAGGCACATG
CTCCACCTGTTCCGTCGCGAAAGCAAGAAGATGGAGAGGACCTGTTGTCC
CTCGCCAACCCCTACGCCGGCCGCGATAATCCTTTTGCAGCGCGCACGGA
CCGCGACAAGACCAGGAAGAAAAATGTGCTATTCATCATGACGGATGATC
TGCGTCCTTCATTGAGCGTGTACGACAAACCAGTGATCTCCCCTGGGATC
GAGCGCCTGGCCAAGGGCGGGGTGGTGTTTGAACGGAACTACAATCAAGA
CCCCATCTGCAACCCCTCGCGCGACTCCATGCTTTCTGGGAGGAGACCCG
ATACGACACAGACGTGGTTATTTGAGAGTATAGTACCGCACAAGTACAGT
AACATCTTCAGATATTTCAAGGAAGAGGGCGGGTACAAAGTGTTGGGGAC
GGGGAAGCTCTGGCATTGGACGTCGACATATCTGGATGATTTTCACAATG
ATTATTTCCCTCCAAACTCCGATGATTGGAATAGTGGCACAGACGAGAAT
TATAGCATGATGAATGCATCTGTCCAACCGGACAAAAATTGGCCAGAAGA
GCGGTATTGGGACTTTCGTATCGCTTCGGAAGGGATCTCACTCATGCAAG
GCGCCGCTGACACCATTGACACCCAGCCCTTTTTCTTGGGTGTCGGCTTC
CATCAACCGCACCGCCCTTGGCACATGCCCCAGAAATACTGGGATTTATA
TGACAAAGTGCCCGTGCCCGTGACCCCCCATTCAACCTGGCCTGTTGATG
CCCCTGTGGTAGCAACGGGGGATATCAACCCTGCTGAAATCGGCATGTTG
CCTGATTCATCGAAAAGGTATTTGGCGAACCCGGACGGAGGTATTCCTGA
AGATGCCATTCGGGAGAATGTAAGGGGATATCATGCTTCAATTTCATTTC
TAGATCATCAGATTCAACGCTTGCTAGACGAGATGGAACGGTTGAAATTG
GTAGAGGACACGATTATTGTTTTTTGTGTAGACCATGGGATGAACATTGG
GGATCACGGGATGTGGGATAAACGGACATTGTTTGAAACCAATGCGAGAG
TCCCTCTTATCATTCGGGATCCGGACTTCCCAGAAAGTTTTGGGACGAAT
GCCTCGGCCCTGGCTGAAAATGTGGATATTTTCCCAACGTTGATTGAAAT
GGCTGGCTTGCCTGACCCTGCTGGGCGATTGTTTCCGCCGTTGGAAGGAA
AAAGTCTGGTTCCTATTTTAGCGGATCCGGCCATGGGGTCTGTAAAGGAT
TTCGCGATGACTCAGATTGCGCGTTGTTGTAGTTCAGGATGCGGGAGTGA
GAAGGTGGAGAAGGTGAACTATCTGAAGTGGGAGGTGTGTAAGGGAGGAA
ATTGGGAGTGGAACGAACTTAATGAGCGGGTATACATGGGATACTCGATG
CGGACGGATGAGTGGCGGTATACTGTGTGGGTGCCTTTTGATGCGCCATC
GCGTGCGCCGCAGTGGGGGCAACCCTTGGGAGGGGAAGAATTGTATGATC
ATCGGGATCCACGGTGTAATGAGAAGGGTAACTTTGATATGTGTGAGACA
AGGAATGTTGCGAAGGATGCGTCTTTGAAGAAGATTAAGGCAGAGTTGTT
CATGAAATTGAGGAGTATTGTTGACGAGAACAATTTGAAGCATTGGAAGG
ATGAGTGGGAGAAGGAGGAAGGGTTAAGAAAGACGAAGAATGAGAAGTAG back to top
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