NO05G03020.1, NO05G03020.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03020.1
Unique NameNO05G03020.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1326
Alignment locationchr5:786678..788194 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:786678..788194 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03020.1 vs.
Match: EWM28102.1 (protein of unknown function DUF1995 [Nannochloropsis gaditana])

HSP 1 Score: 688.0 bits (1774), Expect = 2.000e-194
Identity = 336/445 (75.51%), Postives = 380/445 (85.39%), Query Frame = 0 
Query:    5 SPTKAVAPSSPPTQFS--------ANTAETTSQAYGLAIDQDMRRKLKRDLITIQERLNAEHVDLMNRWVKAYCPIGEEISKANFWRGDAMTIADTKCMRVGLDGLDLRVTVAEQGMFGGPRMRELDQTIKFSTNKIRTSPADLIRAMIGMASAIGDEDSTASLYKIPVDDDKWVIPNNLYLNCVPWKPFARQFFYNRVVRAMDAAITDPSFSNRMQISLLTPETSPAFDTYRIGTVLELVREMTFHQVMCNKRVKLCVQQKMGEGFLKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTKIFFGEVGEHEVEDEDDVFILIAPQNVVGVSIIPLLEKMANKAGGRPFILLNPSLKDRPSAGDVMQVRGREERMAFAKTFKTAFAFETLHEKGLFKINGAVGKAAHDQPWIRYVLVDNQAGLENVNERKEIYEPVQVTEREPID 442
            SP+ +V P+  P+  +        AN AE    A   A++ + +RKL +DL+TIQE LN +H DL+ RW +A+CP+G+EISKANFWRGDAMTI DT+C +V LDGLDLRV VAEQG+FG P++RE+DQ+I FST +IR+ PAD+IRAMI MAS IGDEDSTASLYKIPVDD KWVIPNNLY+N VPWKPF RQFFYNR+VRA+DAAI DPSF NRM I  LTPE++PAFDTYRIGT+LELVRE+ FHQV C KRVKLCVQQKMGEG  KGLPISLNGCRFILENMDWQSKEGEEKEGVVGT+I FGEVGEH VE+EDDVFILIAPQNVVGVSIIPLLE MA KAG RPFI+LNPSL+DRPSAGDVMQVRGREERMAF KTFKT FAFET H+KG+FKINGAVGKA HDQPWIRYVL+DNQ GL+NVN R+E+YEPVQVTEREP D
Sbjct:   35 SPSISVYPARRPSDHATFLPLPAVANPAEKA--AVNSAVEHEGQRKLAQDLVTIQEYLNRDHKDLLCRWARAFCPVGDEISKANFWRGDAMTILDTQCTQVRLDGLDLRVAVAEQGIFGKPKIREVDQSITFSTQRIRSRPADVIRAMISMASTIGDEDSTASLYKIPVDDGKWVIPNNLYMNGVPWKPFTRQFFYNRIVRAVDAAIRDPSFPNRMAIKFLTPESNPAFDTYRIGTILELVRELAFHQVSCGKRVKLCVQQKMGEGIFKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTQIHFGEVGEHVVEEEDDVFILIAPQNVVGVSIIPLLEAMARKAGDRPFIVLNPSLRDRPSAGDVMQVRGREERMAFGKTFKTVFAFETQHDKGMFKINGAVGKAGHDQPWIRYVLIDNQEGLQNVNNRREVYEPVQVTEREPAD 477
The following BLAST results are available for this feature:
BLAST of NO05G03020.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28102.12.000e-19475.51protein of unknown function DUF1995 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03020NO05G03020Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03020.1NO05G03020.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03020.1.cds1NO05G03020.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03020.1.cds2NO05G03020.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03020.1 ID=NO05G03020.1|Name=NO05G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1326bp
ATGTTGTCTATCTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTAC
CCAGTTCTCGGCCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCG
CCATAGACCAAGATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATT
CAGGAGAGGCTTAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAA
GGCGTACTGTCCCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGG
GGGACGCTATGACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGAC
GGTTTGGATTTGCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCC
CAGGATGCGGGAGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATAC
GGACCAGCCCGGCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCG
ATTGGCGACGAGGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGA
CGACAAATGGGTGATTCCGAACAATCTATACCTCAACTGCGTCCCCTGGA
AGCCCTTCGCCCGCCAATTTTTCTACAACAGAGTTGTACGCGCCATGGAT
GCGGCCATCACCGACCCCTCATTCTCTAACCGCATGCAAATAAGTTTGTT
GACCCCAGAAACCAGCCCTGCTTTTGACACTTATCGTATCGGCACCGTCT
TAGAGCTTGTCCGGGAAATGACATTCCATCAAGTCATGTGTAATAAGCGC
GTCAAGCTGTGTGTTCAGCAAAAAATGGGGGAGGGTTTTCTGAAAGGATT
GCCTATTTCCCTTAATGGCTGCAGGTTCATCTTGGAAAACATGGACTGGC
AATCGAAGGAGGGCGAGGAAAAAGAAGGTGTGGTGGGGACGAAAATCTTC
TTCGGGGAAGTTGGGGAGCATGAGGTGGAGGACGAAGATGATGTCTTTAT
TTTGATCGCGCCGCAGAATGTTGTGGGAGTAAGTATCATTCCTCTGCTGG
AAAAGATGGCGAACAAGGCGGGCGGGCGGCCATTCATTCTCTTGAACCCC
AGCTTGAAAGACAGGCCTAGCGCTGGGGATGTGATGCAGGTCCGTGGTCG
AGAGGAGAGGATGGCTTTCGCCAAGACGTTCAAAACAGCGTTTGCGTTTG
AGACACTGCATGAAAAAGGATTGTTTAAAATCAATGGAGCAGTGGGGAAA
GCCGCACATGATCAGCCTTGGATAAGGTATGTGCTTGTGGATAACCAGGC
GGGGCTCGAGAATGTGAATGAACGGAAGGAGATCTATGAACCCGTGCAGG
TAACAGAGAGGGAGCCTATCGATTAA
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protein sequence of NO05G03020.1

>NO05G03020.1-protein ID=NO05G03020.1-protein|Name=NO05G03020.1|organism=Nannochloropsis oceanica|type=polypeptide|length=442bp
MLSISPTKAVAPSSPPTQFSANTAETTSQAYGLAIDQDMRRKLKRDLITI
QERLNAEHVDLMNRWVKAYCPIGEEISKANFWRGDAMTIADTKCMRVGLD
GLDLRVTVAEQGMFGGPRMRELDQTIKFSTNKIRTSPADLIRAMIGMASA
IGDEDSTASLYKIPVDDDKWVIPNNLYLNCVPWKPFARQFFYNRVVRAMD
AAITDPSFSNRMQISLLTPETSPAFDTYRIGTVLELVREMTFHQVMCNKR
VKLCVQQKMGEGFLKGLPISLNGCRFILENMDWQSKEGEEKEGVVGTKIF
FGEVGEHEVEDEDDVFILIAPQNVVGVSIIPLLEKMANKAGGRPFILLNP
SLKDRPSAGDVMQVRGREERMAFAKTFKTAFAFETLHEKGLFKINGAVGK
AAHDQPWIRYVLVDNQAGLENVNERKEIYEPVQVTEREPID*
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mRNA from alignment at chr5:786678..788194+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03020.1 ID=NO05G03020.1|Name=NO05G03020.1|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at chr5:786678..788194+ (Nannochloropsis oceanica)
ATGTTGTCTATCTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTAC
CCAGTTCTCGGCCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCG
CCATAGACCAAGATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATT
CAGGAGAGGCTTAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAA
GGCGTACTGTCCCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGG
GGGACGCTATGACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGAC
GGTTTGGATTTGCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCC
CAGGATGCGGGAGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATAC
GGACCAGCCCGGCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCG
ATTGGCGACGAGGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGA
CGACAAATGGGTGGTAGGACTTTGTATTGTTTTGTTGGGAGGGAGAAAGT
GCGGCCGCTTTCGGTCCATATGAGATAAACACTTCTTTCCCTTCCTTTCT
TTTGTGCTTTAATTCTTGGAAGCATTCAGTTAGCAATAGTTTCGTATAGT
TTTTCTGTTGTCTCATGTATTTTTATGTTCCATTCTCTCAACCATTTCCC
TCAGATTCCGAACAATCTATACCTCAACTGCGTCCCCTGGAAGCCCTTCG
CCCGCCAATTTTTCTACAACAGAGTTGTACGCGCCATGGATGCGGCCATC
ACCGACCCCTCATTCTCTAACCGCATGCAAATAAGTTTGTTGACCCCAGA
AACCAGCCCTGCTTTTGACACTTATCGTATCGGCACCGTCTTAGAGCTTG
TCCGGGAAATGACATTCCATCAAGTCATGTGTAATAAGCGCGTCAAGCTG
TGTGTTCAGCAAAAAATGGGGGAGGGTTTTCTGAAAGGATTGCCTATTTC
CCTTAATGGCTGCAGGTTCATCTTGGAAAACATGGACTGGCAATCGAAGG
AGGGCGAGGAAAAAGAAGGTGTGGTGGGGACGAAAATCTTCTTCGGGGAA
GTTGGGGAGCATGAGGTGGAGGACGAAGATGATGTCTTTATTTTGATCGC
GCCGCAGAATGTTGTGGGAGTAAGTATCATTCCTCTGCTGGAAAAGATGG
CGAACAAGGCGGGCGGGCGGCCATTCATTCTCTTGAACCCCAGCTTGAAA
GACAGGCCTAGCGCTGGGGATGTGATGCAGGTCCGTGGTCGAGAGGAGAG
GATGGCTTTCGCCAAGACGTTCAAAACAGCGTTTGCGTTTGAGACACTGC
ATGAAAAAGGATTGTTTAAAATCAATGGAGCAGTGGGGAAAGCCGCACAT
GATCAGCCTTGGATAAGGTATGTGCTTGTGGATAACCAGGCGGGGCTCGA
GAATGTGAATGAACGGAAGGAGATCTATGAACCCGTGCAGGTAACAGAGA
GGGAGCCTATCGATTAA
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Coding sequence (CDS) from alignment at chr5:786678..788194+

>NO05G03020.1 ID=NO05G03020.1|Name=NO05G03020.1|organism=Nannochloropsis oceanica|type=CDS|length=1326bp|location=Sequence derived from alignment at chr5:786678..788194+ (Nannochloropsis oceanica)
ATGTTGTCTATCTCCCCTACCAAGGCGGTCGCCCCATCTTCTCCCCCTAC
CCAGTTCTCGGCCAACACCGCCGAAACCACTTCACAAGCCTACGGCCTCG
CCATAGACCAAGATATGCGACGAAAGCTCAAGCGTGATCTCATAACGATT
CAGGAGAGGCTTAATGCAGAGCATGTCGACTTAATGAACCGCTGGGTGAA
GGCGTACTGTCCCATTGGAGAGGAGATCAGCAAGGCCAACTTTTGGCGGG
GGGACGCTATGACCATCGCCGACACGAAATGTATGCGTGTAGGACTCGAC
GGTTTGGATTTGCGTGTGACTGTTGCAGAACAGGGAATGTTCGGTGGGCC
CAGGATGCGGGAGCTTGATCAGACTATCAAGTTCAGCACCAACAAAATAC
GGACCAGCCCGGCTGATTTGATAAGAGCAATGATTGGTATGGCCTCAGCG
ATTGGCGACGAGGATTCTACTGCCAGTTTGTATAAAATTCCAGTTGATGA
CGACAAATGGGTGATTCCGAACAATCTATACCTCAACTGCGTCCCCTGGA
AGCCCTTCGCCCGCCAATTTTTCTACAACAGAGTTGTACGCGCCATGGAT
GCGGCCATCACCGACCCCTCATTCTCTAACCGCATGCAAATAAGTTTGTT
GACCCCAGAAACCAGCCCTGCTTTTGACACTTATCGTATCGGCACCGTCT
TAGAGCTTGTCCGGGAAATGACATTCCATCAAGTCATGTGTAATAAGCGC
GTCAAGCTGTGTGTTCAGCAAAAAATGGGGGAGGGTTTTCTGAAAGGATT
GCCTATTTCCCTTAATGGCTGCAGGTTCATCTTGGAAAACATGGACTGGC
AATCGAAGGAGGGCGAGGAAAAAGAAGGTGTGGTGGGGACGAAAATCTTC
TTCGGGGAAGTTGGGGAGCATGAGGTGGAGGACGAAGATGATGTCTTTAT
TTTGATCGCGCCGCAGAATGTTGTGGGAGTAAGTATCATTCCTCTGCTGG
AAAAGATGGCGAACAAGGCGGGCGGGCGGCCATTCATTCTCTTGAACCCC
AGCTTGAAAGACAGGCCTAGCGCTGGGGATGTGATGCAGGTCCGTGGTCG
AGAGGAGAGGATGGCTTTCGCCAAGACGTTCAAAACAGCGTTTGCGTTTG
AGACACTGCATGAAAAAGGATTGTTTAAAATCAATGGAGCAGTGGGGAAA
GCCGCACATGATCAGCCTTGGATAAGGTATGTGCTTGTGGATAACCAGGC
GGGGCTCGAGAATGTGAATGAACGGAAGGAGATCTATGAACCCGTGCAGG
TAACAGAGAGGGAGCCTATCGATTAA
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Synonyms
Publications