NO05G03010.1, NO05G03010.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G03010.1
Unique NameNO05G03010.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length870
Alignment locationchr5:784889..786110 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:784889..786110 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G03010.1 vs.
Match: EWM28134.1 (mpv17-like protein [Nannochloropsis gaditana])

HSP 1 Score: 495.0 bits (1273), Expect = 1.600e-136
Identity = 251/289 (86.85%), Postives = 265/289 (91.70%), Query Frame = 0 
Query:    1 MFKVLTATLAVGATAFMPPTRPAIKAVRGPSMSMMTGATTGKIDPMFDGASPMYQDILRRRPETGHGGGIIIGGGGDGEGTGGGGGGGGGGSGDGNKGGDNPLVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLKRLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPIFGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFIPNSQRLLYINTVQIGYNCFLSILANKNVAPEAAPAVSKK 290
            MFK+LTATLAVGATAFM PTRPAIKAVRGPSMSMMTGAT GKID MF+GASP YQD+LRRRPETGHGGGIIIGGGGDGEGTGGGGG GGGG  +GNKGG+NPL +LWKGYNQLLKDQPLLTKALTSFVGFS GDLLAQKFIDK + +DLKRLLKLA FG LVHGPTGHYFYGFLDGKMPGTSA TVASKVAIDQL+WNPIFGTMFFGWLGL EGQ+LEGIK RI+KDL ASVKGSWTVWPIAHAINFRFIPNSQRLLYIN+VQIGYN FLS LAN+N APE AP  + K
Sbjct:    1 MFKLLTATLAVGATAFMAPTRPAIKAVRGPSMSMMTGATMGKIDAMFEGASPFYQDVLRRRPETGHGGGIIIGGGGDGEGTGGGGGDGGGG--EGNKGGENPLQLLWKGYNQLLKDQPLLTKALTSFVGFSVGDLLAQKFIDKSEVVDLKRLLKLAFFGLLVHGPTGHYFYGFLDGKMPGTSAVTVASKVAIDQLLWNPIFGTMFFGWLGLTEGQNLEGIKNRIEKDLWASVKGSWTVWPIAHAINFRFIPNSQRLLYINSVQIGYNMFLSFLANRNAAPEPAPVAAGK 287
The following BLAST results are available for this feature:
BLAST of NO05G03010.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28134.11.600e-13686.85mpv17-like protein [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G03010NO05G03010Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G03010.1NO05G03010.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G03010.1.cds1NO05G03010.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G03010.1.cds2NO05G03010.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G03010.1 ID=NO05G03010.1|Name=NO05G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=870bp
ATGTTCAAGGTCCTCACCGCCACGCTGGCGGTCGGTGCCACGGCGTTCAT
GCCTCCTACCCGCCCTGCCATCAAAGCCGTCCGCGGCCCATCCATGTCCA
TGATGACTGGTGCGACAACCGGGAAGATCGACCCCATGTTCGACGGCGCC
AGCCCGATGTATCAAGACATTCTCCGTCGCCGCCCCGAGACAGGCCACGG
TGGTGGGATCATCATCGGCGGCGGTGGTGATGGGGAAGGCACCGGCGGTG
GTGGTGGAGGCGGAGGGGGTGGAAGCGGCGATGGGAACAAAGGCGGAGAC
AATCCCTTGGTGGTGCTGTGGAAAGGCTACAACCAGCTGCTGAAGGATCA
GCCTTTGCTTACCAAAGCCTTGACCTCATTTGTGGGGTTTTCGGCGGGTG
ATTTGCTGGCGCAAAAGTTCATTGACAAAAAGGACACGATTGACTTGAAG
CGCCTGTTGAAGCTTGCGTCGTTTGGGTTCTTGGTTCATGGTCCCACTGG
CCACTATTTCTATGGCTTCTTGGATGGGAAGATGCCTGGCACCAGCGCTG
CAACAGTGGCGTCCAAGGTGGCGATTGACCAGTTGATCTGGAACCCTATC
TTCGGGACGATGTTTTTTGGCTGGTTGGGGTTGATGGAGGGACAGGATCT
GGAAGGGATCAAGACCCGAATTCAGAAGGATTTGATGGCCTCGGTGAAAG
GCTCCTGGACTGTCTGGCCAATTGCGCACGCGATTAACTTCCGTTTCATT
CCCAACTCCCAGCGTTTGTTGTACATCAACACGGTTCAGATTGGATACAA
CTGCTTCTTGTCCATCTTAGCGAACAAGAACGTGGCGCCTGAGGCTGCCC
CCGCCGTTTCTAAGAAGTAA
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protein sequence of NO05G03010.1

>NO05G03010.1-protein ID=NO05G03010.1-protein|Name=NO05G03010.1|organism=Nannochloropsis oceanica|type=polypeptide|length=290bp
MFKVLTATLAVGATAFMPPTRPAIKAVRGPSMSMMTGATTGKIDPMFDGA
SPMYQDILRRRPETGHGGGIIIGGGGDGEGTGGGGGGGGGGSGDGNKGGD
NPLVVLWKGYNQLLKDQPLLTKALTSFVGFSAGDLLAQKFIDKKDTIDLK
RLLKLASFGFLVHGPTGHYFYGFLDGKMPGTSAATVASKVAIDQLIWNPI
FGTMFFGWLGLMEGQDLEGIKTRIQKDLMASVKGSWTVWPIAHAINFRFI
PNSQRLLYINTVQIGYNCFLSILANKNVAPEAAPAVSKK*
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mRNA from alignment at chr5:784889..786110-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G03010.1 ID=NO05G03010.1|Name=NO05G03010.1|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp|location=Sequence derived from alignment at chr5:784889..786110- (Nannochloropsis oceanica)
ATGTTCAAGGTCCTCACCGCCACGCTGGCGGTCGGTGCCACGGCGTTCAT
GCCTCCTACCCGCCCTGCCATCAAAGCCGGTAAGTGATGGATCTGTTGTT
TATGCGTATTCCGAGTCGAAAGACGGAAGAATTTCCGCCGCGGCCTTCGT
GACACCCGGCGAGGACTCCCGAACCTCAAGGTGAACCTTTGTCAAGTGTG
TCGTGTGTCTTGAGTAGACGCAAACCTGCGTGAGAGATAAAGGCGCAACC
GTGGCACCTCTGGATGTATTTTGTGCCGGGGCAATGGTCGAAAATGAGGT
CGGTCGTCCAGGTCACGTGGTCACACCCTATGACAAGCTTCGGGAAGCCC
GACGTGCTCGGACGAAACGGAGGGGAAACCCTATCCCTTCTTACCTCTCA
CCCCTCCCTCTGTCCTTCCCTTTTGTCACAGTCCGCGGCCCATCCATGTC
CATGATGACTGGTGCGACAACCGGGAAGATCGACCCCATGTTCGACGGCG
CCAGCCCGATGTATCAAGACATTCTCCGTCGCCGCCCCGAGACAGGCCAC
GGTGGTGGGATCATCATCGGCGGCGGTGGTGATGGGGAAGGCACCGGCGG
TGGTGGTGGAGGCGGAGGGGGTGGAAGCGGCGATGGGAACAAAGGCGGAG
ACAATCCCTTGGTGGTGCTGTGGAAAGGCTACAACCAGCTGCTGAAGGAT
CAGCCTTTGCTTACCAAAGCCTTGACCTCATTTGTGGGGTTTTCGGCGGG
TGATTTGCTGGCGCAAAAGTTCATTGACAAAAAGGACACGATTGACTTGA
AGCGCCTGTTGAAGCTTGCGTCGTTTGGGTTCTTGGTTCATGGTCCCACT
GGCCACTATTTCTATGGCTTCTTGGATGGGAAGATGCCTGGCACCAGCGC
TGCAACAGTGGCGTCCAAGGTGGCGATTGACCAGTTGATCTGGAACCCTA
TCTTCGGGACGATGTTTTTTGGCTGGTTGGGGTTGATGGAGGGACAGGAT
CTGGAAGGGATCAAGACCCGAATTCAGAAGGATTTGATGGCCTCGGTGAA
AGGCTCCTGGACTGTCTGGCCAATTGCGCACGCGATTAACTTCCGTTTCA
TTCCCAACTCCCAGCGTTTGTTGTACATCAACACGGTTCAGATTGGATAC
AACTGCTTCTTGTCCATCTTAGCGAACAAGAACGTGGCGCCTGAGGCTGC
CCCCGCCGTTTCTAAGAAGTAA
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Coding sequence (CDS) from alignment at chr5:784889..786110-

>NO05G03010.1 ID=NO05G03010.1|Name=NO05G03010.1|organism=Nannochloropsis oceanica|type=CDS|length=870bp|location=Sequence derived from alignment at chr5:784889..786110- (Nannochloropsis oceanica)
ATGTTCAAGGTCCTCACCGCCACGCTGGCGGTCGGTGCCACGGCGTTCAT
GCCTCCTACCCGCCCTGCCATCAAAGCCGTCCGCGGCCCATCCATGTCCA
TGATGACTGGTGCGACAACCGGGAAGATCGACCCCATGTTCGACGGCGCC
AGCCCGATGTATCAAGACATTCTCCGTCGCCGCCCCGAGACAGGCCACGG
TGGTGGGATCATCATCGGCGGCGGTGGTGATGGGGAAGGCACCGGCGGTG
GTGGTGGAGGCGGAGGGGGTGGAAGCGGCGATGGGAACAAAGGCGGAGAC
AATCCCTTGGTGGTGCTGTGGAAAGGCTACAACCAGCTGCTGAAGGATCA
GCCTTTGCTTACCAAAGCCTTGACCTCATTTGTGGGGTTTTCGGCGGGTG
ATTTGCTGGCGCAAAAGTTCATTGACAAAAAGGACACGATTGACTTGAAG
CGCCTGTTGAAGCTTGCGTCGTTTGGGTTCTTGGTTCATGGTCCCACTGG
CCACTATTTCTATGGCTTCTTGGATGGGAAGATGCCTGGCACCAGCGCTG
CAACAGTGGCGTCCAAGGTGGCGATTGACCAGTTGATCTGGAACCCTATC
TTCGGGACGATGTTTTTTGGCTGGTTGGGGTTGATGGAGGGACAGGATCT
GGAAGGGATCAAGACCCGAATTCAGAAGGATTTGATGGCCTCGGTGAAAG
GCTCCTGGACTGTCTGGCCAATTGCGCACGCGATTAACTTCCGTTTCATT
CCCAACTCCCAGCGTTTGTTGTACATCAACACGGTTCAGATTGGATACAA
CTGCTTCTTGTCCATCTTAGCGAACAAGAACGTGGCGCCTGAGGCTGCCC
CCGCCGTTTCTAAGAAGTAA
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Synonyms
Publications