NO05G02980.1, NO05G02980.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02980.1
Unique NameNO05G02980.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length861
Alignment locationchr5:778825..779685 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:778825..779685 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02980.1 vs.
Match: WP_094590205.1 (class I SAM-dependent methyltransferase [Vulcanococcus limneticus])

HSP 1 Score: 251.9 bits (642), Expect = 2.400e-63
Identity = 140/275 (50.91%), Postives = 172/275 (62.55%), Query Frame = 0 
Query:   12 LHLFETAWRAYRKLVDEDYMEHAALTAVIAAVLPTLLPPAGSSTGWMADLGCGDLGLLAPLLRPLPLAGFIGVDATAEVLPLAAGRLGGGRGEGVERGYGGAPWPCEWVCADLLDWSEERRKALQEEGVIDASGVEPNSSSSSSGSTKICSSPLPRMHVISCLFALHHLSDPLKQRALAALRACMATGGSLLIADVFRKDGEDREAYLSRYKARTV-EWVRLEKEEREAVLEHVCTSDYPSERSEFVALARRAGWGKARWLWGGMHEAEAVLLLQ 286
            + LF  +W+AYR +VD D MEH ALT  + A+L  L    G+  GWMADLGCGDLGLLAP+LR LPLAG IGVDATA VLPLAA R+             G+P+PC+W+ +DLLDWSE RR   Q E      G EP                   + ++SCLFALHHL D  KQR L ALR C+A  G LL+ADVFR DGEDR+AY+ RY  R   +W  L   ER+ V +H+  SD+P+ER +F  LA  AGW ++ WLW G H AEA+LLL+
Sbjct:    1 MELFTRSWQAYRHVVDLDLMEHRALTRALEALL--LERGGGAPLGWMADLGCGDLGLLAPILRRLPLAGLIGVDATAAVLPLAAARM------------EGSPFPCQWIDSDLLDWSEARR--AQRESDPPGPGPEP-------------------LSLVSCLFALHHLDDSNKQRVLEALRPCLAPDGCLLVADVFRGDGEDRQAYIQRYLQRIASQWQELPAAERQLVGDHLSASDFPAEREQFRQLAAAAGW-QSHWLWNGRHGAEALLLLE 239
The following BLAST results are available for this feature:
BLAST of NO05G02980.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_094590205.12.400e-6350.91class I SAM-dependent methyltransferase [Vulcanoco... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02980NO05G02980Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02980.1NO05G02980.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02980.1.cds1NO05G02980.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02980.1 ID=NO05G02980.1|Name=NO05G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp
ATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCTCTTCGAGAC
TGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACATGGAACACG
CCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTCCTCCCCCCC
GCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGGGGATCTCGG
GCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTTTTATTGGAG
TTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGATTGGGCGGA
GGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCCCTGGCCCTG
TGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGAGGAGAAAAG
CCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAACCCAACAGC
AGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCCCCTACCACG
CATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCTCAGATCCAC
TCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCAACGGGGGGG
AGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGACCGAGAAGC
ATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGAGGTTGGAGA
AAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGTGACTATCCA
AGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGGGTGGGGGAA
GGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGGTGCTGTTAT
TGCAATTTTGA
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protein sequence of NO05G02980.1

>NO05G02980.1-protein ID=NO05G02980.1-protein|Name=NO05G02980.1|organism=Nannochloropsis oceanica|type=polypeptide|length=287bp
MTAHHNVTSSSLHLFETAWRAYRKLVDEDYMEHAALTAVIAAVLPTLLPP
AGSSTGWMADLGCGDLGLLAPLLRPLPLAGFIGVDATAEVLPLAAGRLGG
GRGEGVERGYGGAPWPCEWVCADLLDWSEERRKALQEEGVIDASGVEPNS
SSSSSGSTKICSSPLPRMHVISCLFALHHLSDPLKQRALAALRACMATGG
SLLIADVFRKDGEDREAYLSRYKARTVEWVRLEKEEREAVLEHVCTSDYP
SERSEFVALARRAGWGKARWLWGGMHEAEAVLLLQF*
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mRNA from alignment at chr5:778825..779685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02980.1 ID=NO05G02980.1|Name=NO05G02980.1|organism=Nannochloropsis oceanica|type=mRNA|length=861bp|location=Sequence derived from alignment at chr5:778825..779685- (Nannochloropsis oceanica)
ATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCTCTTCGAGAC
TGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACATGGAACACG
CCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTCCTCCCCCCC
GCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGGGGATCTCGG
GCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTTTTATTGGAG
TTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGATTGGGCGGA
GGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCCCTGGCCCTG
TGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGAGGAGAAAAG
CCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAACCCAACAGC
AGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCCCCTACCACG
CATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCTCAGATCCAC
TCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCAACGGGGGGG
AGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGACCGAGAAGC
ATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGAGGTTGGAGA
AAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGTGACTATCCA
AGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGGGTGGGGGAA
GGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGGTGCTGTTAT
TGCAATTTTGA
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Coding sequence (CDS) from alignment at chr5:778825..779685-

>NO05G02980.1 ID=NO05G02980.1|Name=NO05G02980.1|organism=Nannochloropsis oceanica|type=CDS|length=861bp|location=Sequence derived from alignment at chr5:778825..779685- (Nannochloropsis oceanica)
ATGACGGCCCATCACAATGTGACGTCGTCCTCCCTCCACCTCTTCGAGAC
TGCCTGGCGAGCTTACCGCAAGCTGGTCGACGAAGATTACATGGAACACG
CCGCACTAACTGCTGTCATCGCCGCAGTACTTCCCACCCTCCTCCCCCCC
GCCGGCTCTAGCACCGGCTGGATGGCTGACTTAGGGTGTGGGGATCTCGG
GCTATTGGCGCCCTTGCTTCGACCGTTACCCCTCGCGGGTTTTATTGGAG
TTGATGCCACAGCCGAGGTTCTCCCTCTGGCCGCCGGTCGATTGGGCGGA
GGACGGGGAGAGGGCGTTGAGAGGGGTTATGGAGGGGCGCCCTGGCCCTG
TGAGTGGGTGTGTGCGGATCTGTTAGATTGGAGCGAGGAGAGGAGAAAAG
CCCTCCAGGAGGAAGGCGTGATAGATGCAAGCGGGGTGGAACCCAACAGC
AGCAGCAGCAGCAGCGGCAGCACCAAGATATGTTCTTCCCCCCTACCACG
CATGCACGTAATCAGTTGCCTCTTCGCGCTGCATCACCTCTCAGATCCAC
TCAAGCAACGAGCTTTAGCCGCTTTGCGTGCCTGCATGGCAACGGGGGGG
AGTCTGCTGATAGCTGATGTCTTCCGGAAGGATGGGGAGGACCGAGAAGC
ATACTTGTCTAGATATAAGGCGAGAACTGTTGAGTGGGTGAGGTTGGAGA
AAGAGGAGCGGGAAGCTGTTCTAGAGCATGTCTGCACTAGTGACTATCCA
AGTGAGAGGAGCGAGTTTGTGGCGTTGGCCAGGAGGGCGGGGTGGGGGAA
GGCGAGGTGGTTGTGGGGAGGGATGCATGAGGCGGAGGCGGTGCTGTTAT
TGCAATTTTGA
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Synonyms
Publications