NO05G02970.1, NO05G02970.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02970.1
Unique NameNO05G02970.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1786
Alignment locationchr5:776800..778585 +

Link to JBrowse

Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:776800..778585 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
The following BLAST results are available for this feature:
BLAST of NO05G02970.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 0
Match NameE-valueIdentityDescription
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02970NO05G02970Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02970.1NO05G02970.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02970.1.cds1NO05G02970.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02970.1 ID=NO05G02970.1|Name=NO05G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp
AGGGCGGTCTTGCTTCTTCTCAAACCCACATGCCTCACCGAACATACACA
GGCTTCTTTCAGTCCCGACCTTGCCTGCCTGCCTTCGGCCCCAGAATCCT
CTAGAGCTCGAGATAGATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCC
ATGGCCTCGTACAACGCGGCGCCAGGAAGCAGCAACGGGAACTTTATCCG
CTTCGAGCTGCAGAACCCCGCAAGCTTCAGGCAGATCAGTCGGTATATGA
GCAACTAGAGGAGGAAGGGTGGGGACTGGTACCAGCAGTGGTACCGGTGG
GGTATGCAACTGGGAAAGGAGATGATAATTATCATGATGATGACAGTGGT
GGTGGTTATAGAGTCAAACGCAAGCGATCCAATAACAACCGTAGAGACAA
GGAAGGATGCGAGGACGACGACGAGGAGGAGGACGACGAGGACAGAAGCA
TGTTAAGCAAGGCGGGCATCCGCGGTGGTCGACCTGGAAGTCTAACGACT
TGGGAGCTGAACCACTATAGGCGACGGCATTTCCTGATGCCACAGGGAGC
GTGGCCTATCCTGCCTTCTGCATCGCCAACGCCGCCACCAGTGATCGAGT
TACCGCAAGGAAACGGCTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCT
GACAACCTAGGTATTGACGGCGTGCAGCACTATATCCCACGTATCCGGGT
CTCGGGCGGTGCGCGGAGACAGAAAAATAAAAGAGCACTCGAGGCTGCAG
AAACGCAGTTGGAATGGCTTCCGTTTGAGAACTTGGCGATTCAGACGGAA
AAGAGGGAGGACGACAACTACCCGATACCTTCTCCTGTACTTGTCCGTGC
ATTGGATGCGGCGATTGTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATC
AAATGGAAGAAGAGGACGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAG
GACAAGAATGAGAATGAGGAGGAAGATCGAGAACGGAAGACGAAGAGCAC
AGTTGAGGTGCGACTCTATGATTTGCTTGAGTCAGCGTTGGGCACGCTGG
AGGAGGACAAAGACGAGGGTGGGGGGGAGGACGACTACAACGACGGCGAA
GACGGCACCAAAAACCTGATCCGAAAACGAATGGAAGCTGTGCACGTCCT
GCGCCGATGCTTAGGGCGAGAGACTGAGCGGTTGATAGACGGGCTCCTGG
GTCATGTATTGGCGTGTTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAG
GAAAGGTATCTAGCCTGGTTACGGCGACAGCGGGCCTGCAACTTGATCGA
CCCCCGTAATAATGTTTCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGG
GTTTGATTTTAGGGGACTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGG
ATGCAGGTGGATATGGCGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAA
GGCCGAGAAGGTAACGTACATGGAAGCGAAGAGGCAGATGAAAGAAAAAA
TGAAGTATTCAAAAAGTGGGAGACGGAAATTGAACGAACATGGTCGGAAG
TTGCGAACGAGGTTGGATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGA
GAAAGCGAGGGAGGAAGAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCG
ATCCGGGGACGCTCAGCCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGG
GCCGGGAAGGGGGCATTGCCACCAGAGGAAGGCTTGTAAAGGGATGGGAT
AAATGAATTCTTACTTTATGACGAATATACCGCTGT
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protein sequence of NO05G02970.1

>NO05G02970.1-protein ID=NO05G02970.1-protein|Name=NO05G02970.1|organism=Nannochloropsis oceanica|type=polypeptide|length=541bp
MELKEVARAAIHGLVQRGARKQQRELYPLRAAEPRKLQADQSVYEQLEEE
GWGLVPAVVPVGYATGKGDDNYHDDDSGGGYRVKRKRSNNNRRDKEGCED
DDEEEDDEDRSMLSKAGIRGGRPGSLTTWELNHYRRRHFLMPQGAWPILP
SASPTPPPVIELPQGNGYCRPPPPEALPDNLGIDGVQHYIPRIRVSGGAR
RQKNKRALEAAETQLEWLPFENLAIQTEKREDDNYPIPSPVLVRALDAAI
VRQLVGVVQAHQMEEEDEFGDKEEDEKEDKNENEEEDRERKTKSTVEVRL
YDLLESALGTLEEDKDEGGGEDDYNDGEDGTKNLIRKRMEAVHVLRRCLG
RETERLIDGLLGHVLACWSERSQAQRSEERYLAWLRRQRACNLIDPRNNV
SLEDRVGFAGQGLILGDWHDVLGVVEERMQVDMAAAKGREEGRRKAEKVT
YMEAKRQMKEKMKYSKSGRRKLNEHGRKLRTRLDENEEQEELEEEKAREE
EGEVNLLRPAFDPGTLSRSRARLERLFWAGKGALPPEEGL*
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mRNA from alignment at chr5:776800..778585+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02970.1 ID=NO05G02970.1|Name=NO05G02970.1|organism=Nannochloropsis oceanica|type=mRNA|length=1786bp|location=Sequence derived from alignment at chr5:776800..778585+ (Nannochloropsis oceanica)
AGGGCGGTCTTGCTTCTTCTCAAACCCACATGCCTCACCGAACATACACA
GGCTTCTTTCAGTCCCGACCTTGCCTGCCTGCCTTCGGCCCCAGAATCCT
CTAGAGCTCGAGATAGATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCC
ATGGCCTCGTACAACGCGGCGCCAGGAAGCAGCAACGGGAACTTTATCCG
CTTCGAGCTGCAGAACCCCGCAAGCTTCAGGCAGATCAGTCGGTATATGA
GCAACTAGAGGAGGAAGGGTGGGGACTGGTACCAGCAGTGGTACCGGTGG
GGTATGCAACTGGGAAAGGAGATGATAATTATCATGATGATGACAGTGGT
GGTGGTTATAGAGTCAAACGCAAGCGATCCAATAACAACCGTAGAGACAA
GGAAGGATGCGAGGACGACGACGAGGAGGAGGACGACGAGGACAGAAGCA
TGTTAAGCAAGGCGGGCATCCGCGGTGGTCGACCTGGAAGTCTAACGACT
TGGGAGCTGAACCACTATAGGCGACGGCATTTCCTGATGCCACAGGGAGC
GTGGCCTATCCTGCCTTCTGCATCGCCAACGCCGCCACCAGTGATCGAGT
TACCGCAAGGAAACGGCTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCT
GACAACCTAGGTATTGACGGCGTGCAGCACTATATCCCACGTATCCGGGT
CTCGGGCGGTGCGCGGAGACAGAAAAATAAAAGAGCACTCGAGGCTGCAG
AAACGCAGTTGGAATGGCTTCCGTTTGAGAACTTGGCGATTCAGACGGAA
AAGAGGGAGGACGACAACTACCCGATACCTTCTCCTGTACTTGTCCGTGC
ATTGGATGCGGCGATTGTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATC
AAATGGAAGAAGAGGACGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAG
GACAAGAATGAGAATGAGGAGGAAGATCGAGAACGGAAGACGAAGAGCAC
AGTTGAGGTGCGACTCTATGATTTGCTTGAGTCAGCGTTGGGCACGCTGG
AGGAGGACAAAGACGAGGGTGGGGGGGAGGACGACTACAACGACGGCGAA
GACGGCACCAAAAACCTGATCCGAAAACGAATGGAAGCTGTGCACGTCCT
GCGCCGATGCTTAGGGCGAGAGACTGAGCGGTTGATAGACGGGCTCCTGG
GTCATGTATTGGCGTGTTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAG
GAAAGGTATCTAGCCTGGTTACGGCGACAGCGGGCCTGCAACTTGATCGA
CCCCCGTAATAATGTTTCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGG
GTTTGATTTTAGGGGACTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGG
ATGCAGGTGGATATGGCGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAA
GGCCGAGAAGGTAACGTACATGGAAGCGAAGAGGCAGATGAAAGAAAAAA
TGAAGTATTCAAAAAGTGGGAGACGGAAATTGAACGAACATGGTCGGAAG
TTGCGAACGAGGTTGGATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGA
GAAAGCGAGGGAGGAAGAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCG
ATCCGGGGACGCTCAGCCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGG
GCCGGGAAGGGGGCATTGCCACCAGAGGAAGGCTTGTAAAGGGATGGGAT
AAATGAATTCTTACTTTATGACGAATATACCGCTGT
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Coding sequence (CDS) from alignment at chr5:776800..778585+

>NO05G02970.1 ID=NO05G02970.1|Name=NO05G02970.1|organism=Nannochloropsis oceanica|type=CDS|length=1623bp|location=Sequence derived from alignment at chr5:776800..778585+ (Nannochloropsis oceanica)
ATGGAGCTGAAGGAAGTGGCACGCGCGGCGATCCATGGCCTCGTACAACG
CGGCGCCAGGAAGCAGCAACGGGAACTTTATCCGCTTCGAGCTGCAGAAC
CCCGCAAGCTTCAGGCAGATCAGTCGGTATATGAGCAACTAGAGGAGGAA
GGGTGGGGACTGGTACCAGCAGTGGTACCGGTGGGGTATGCAACTGGGAA
AGGAGATGATAATTATCATGATGATGACAGTGGTGGTGGTTATAGAGTCA
AACGCAAGCGATCCAATAACAACCGTAGAGACAAGGAAGGATGCGAGGAC
GACGACGAGGAGGAGGACGACGAGGACAGAAGCATGTTAAGCAAGGCGGG
CATCCGCGGTGGTCGACCTGGAAGTCTAACGACTTGGGAGCTGAACCACT
ATAGGCGACGGCATTTCCTGATGCCACAGGGAGCGTGGCCTATCCTGCCT
TCTGCATCGCCAACGCCGCCACCAGTGATCGAGTTACCGCAAGGAAACGG
CTATTGTCGTCCTCCTCCTCCGGAGGCGCTGCCTGACAACCTAGGTATTG
ACGGCGTGCAGCACTATATCCCACGTATCCGGGTCTCGGGCGGTGCGCGG
AGACAGAAAAATAAAAGAGCACTCGAGGCTGCAGAAACGCAGTTGGAATG
GCTTCCGTTTGAGAACTTGGCGATTCAGACGGAAAAGAGGGAGGACGACA
ACTACCCGATACCTTCTCCTGTACTTGTCCGTGCATTGGATGCGGCGATT
GTGCGGCAGCTGGTAGGGGTAGTTCAAGCCCATCAAATGGAAGAAGAGGA
CGAGTTTGGGGATAAAGAGGAGGATGAGAAGGAGGACAAGAATGAGAATG
AGGAGGAAGATCGAGAACGGAAGACGAAGAGCACAGTTGAGGTGCGACTC
TATGATTTGCTTGAGTCAGCGTTGGGCACGCTGGAGGAGGACAAAGACGA
GGGTGGGGGGGAGGACGACTACAACGACGGCGAAGACGGCACCAAAAACC
TGATCCGAAAACGAATGGAAGCTGTGCACGTCCTGCGCCGATGCTTAGGG
CGAGAGACTGAGCGGTTGATAGACGGGCTCCTGGGTCATGTATTGGCGTG
TTGGTCCGAGCGCTCTCAAGCGCAACGATCGGAGGAAAGGTATCTAGCCT
GGTTACGGCGACAGCGGGCCTGCAACTTGATCGACCCCCGTAATAATGTT
TCCTTGGAAGATAGGGTGGGGTTTGCGGGTCAGGGTTTGATTTTAGGGGA
CTGGCATGATGTTTTGGGGGTGGTGGAGGAAAGGATGCAGGTGGATATGG
CGGCGGCGAAGGGCAGGGAGGAGGGACGGAGAAAGGCCGAGAAGGTAACG
TACATGGAAGCGAAGAGGCAGATGAAAGAAAAAATGAAGTATTCAAAAAG
TGGGAGACGGAAATTGAACGAACATGGTCGGAAGTTGCGAACGAGGTTGG
ATGAGAATGAGGAGCAAGAGGAGTTAGAGGAGGAGAAAGCGAGGGAGGAA
GAAGGGGAGGTCAACCTTTTAAGGCCTGCGTTCGATCCGGGGACGCTCAG
CCGATCGCGAGCGCGGTTGGAGAGATTGTTTTGGGCCGGGAAGGGGGCAT
TGCCACCAGAGGAAGGCTTGTAA
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Synonyms
Publications