NO05G02940.1, NO05G02940.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02940.1
Unique NameNO05G02940.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length636
Alignment locationchr5:770562..771451 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:770562..771451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02940.1 vs.
Match: EWM28115.1 (30s ribosomal protein s9 [Nannochloropsis gaditana])

HSP 1 Score: 244.2 bits (622), Expect = 3.600e-61
Identity = 137/208 (65.87%), Postives = 154/208 (74.04%), Query Frame = 0 
Query:    4 MLTWASSRIQQLVRVPAAVSVVQTSTTTCTNIPTVAQRFSTAAVEPSTAPEDSAALPLPDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARVWLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKGGGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQPKARKKDQWVKR 212
            ML    S + +L  +  + ++    T T T     A+RFST+   P  A  D  +  + DA A+      PP LNPRLD+LNRAYATGRRKTSVARVWL AG G I VNGKEV+EYFGR AYRDKL+EPFVVT + G FDV CTVKGGGTTGQVGA++LGISRALEVWD AHRPPLAKESLFTRDSRAVE KK GQPKARKKDQWVKR
Sbjct:   12 MLPTVHSNVSKLSSISRSTALRVLVTNTGTATMACARRFSTST--PLAAEGDDPSAAVNDAHAS------PPPLNPRLDSLNRAYATGRRKTSVARVWLLAGDGRIVVNGKEVHEYFGRTAYRDKLIEPFVVTESVGQFDVKCTVKGGGTTGQVGAISLGISRALEVWDPAHRPPLAKESLFTRDSRAVESKKSGQPKARKKDQWVKR 211
The following BLAST results are available for this feature:
BLAST of NO05G02940.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28115.13.600e-6165.8730s ribosomal protein s9 [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02940NO05G02940Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02940.1NO05G02940.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02940.1.cds1NO05G02940.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02940.1.cds2NO05G02940.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02940.1 ID=NO05G02940.1|Name=NO05G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=636bp
ATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGCTTGTCCG
GGTCCCGGCAGCAGTGTCGGTGGTTCAGACTTCCACAACCACTTGCACCA
ACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCGAGCCTTCA
ACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCCTGATGCTGATGCCAC
TGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCTGGACGCCT
TGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGGCACGAGTG
TGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAGGAAGTCTA
TGAGTACTTCGGGCGGGTCGCGTACAGGGACAAGTTGGTGGAGCCCTTTG
TGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGGTGAAGGGA
GGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATCTCGAGGGC
GTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAAAGAAAGTC
TGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAGGGCAGCCC
AAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAG
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protein sequence of NO05G02940.1

>NO05G02940.1-protein ID=NO05G02940.1-protein|Name=NO05G02940.1|organism=Nannochloropsis oceanica|type=polypeptide|length=212bp
MAAMLTWASSRIQQLVRVPAAVSVVQTSTTTCTNIPTVAQRFSTAAVEPS
TAPEDSAALPLPDADATVDGSSLPPSLNPRLDALNRAYATGRRKTSVARV
WLKAGQGHIRVNGKEVYEYFGRVAYRDKLVEPFVVTGTAGDFDVMCTVKG
GGTTGQVGAVALGISRALEVWDSAHRPPLAKESLFTRDSRAVERKKPGQP
KARKKDQWVKR*
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mRNA from alignment at chr5:770562..771451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02940.1 ID=NO05G02940.1|Name=NO05G02940.1|organism=Nannochloropsis oceanica|type=mRNA|length=890bp|location=Sequence derived from alignment at chr5:770562..771451- (Nannochloropsis oceanica)
ATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGCTTGTCCG
GGTCCCGGCAGCAGTGTCGGTGGTTCAGGTAAGAAGGTTTTTGGTGGAAC
GTGGTAGATGCACTCAGGAAAGGAGGTGGTGATAATGCGCCGCCGCTGAG
TGAAAGCGCTGCGTTAGAGAGAGGCATCCCTCGATGCCCCTGTGCCTCAG
TTGGGTTTCTTGGAATGTGTGTGGCAAGGGAGCATAGAGAGGCTTCCTTT
CCAGCAAGTCGTCCCATCTCTCTGAAGTGTGAAGCCACAACTCATACCAA
CTTACCTCGCCACCCACTTTTTCTTGACGTAGACTTCCACAACCACTTGC
ACCAACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCGAGCC
TTCAACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCCTGATGCTGATG
CCACTGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCTGGAC
GCCTTGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGGCACG
AGTGTGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAGGAAG
TCTATGAGTACTTCGGGCGGGTCGCGTACAGGGACAAGTTGGTGGAGCCC
TTTGTGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGGTGAA
GGGAGGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATCTCGA
GGGCGTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAAAGAA
AGTCTGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAGGGCA
GCCCAAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAG
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Coding sequence (CDS) from alignment at chr5:770562..771451-

>NO05G02940.1 ID=NO05G02940.1|Name=NO05G02940.1|organism=Nannochloropsis oceanica|type=CDS|length=636bp|location=Sequence derived from alignment at chr5:770562..771451- (Nannochloropsis oceanica)
ATGGCCGCCATGCTTACCTGGGCCTCGTCCAGAATACAGCAGCTTGTCCG
GGTCCCGGCAGCAGTGTCGGTGGTTCAGACTTCCACAACCACTTGCACCA
ACATCCCCACTGTCGCCCAGCGCTTCTCTACTGCTGCCGTCGAGCCTTCA
ACTGCACCAGAAGATAGCGCGGCCCTCCCTCTTCCTGATGCTGATGCCAC
TGTCGACGGCTCATCCCTTCCTCCCTCCCTCAACCCGCGCCTGGACGCCT
TGAACCGTGCCTATGCGACGGGCCGTCGTAAGACAAGCGTGGCACGAGTG
TGGTTAAAGGCAGGACAGGGACACATACGAGTGAATGGAAAGGAAGTCTA
TGAGTACTTCGGGCGGGTCGCGTACAGGGACAAGTTGGTGGAGCCCTTTG
TGGTGACTGGGACAGCGGGCGATTTTGACGTTATGTGCACGGTGAAGGGA
GGAGGGACAACTGGCCAGGTGGGTGCGGTGGCGCTGGGGATCTCGAGGGC
GTTGGAGGTCTGGGACTCGGCGCATCGGCCGCCGTTGGCGAAAGAAAGTC
TGTTTACCCGGGATTCAAGGGCGGTGGAGAGGAAGAAGCCAGGGCAGCCC
AAGGCAAGGAAGAAGGATCAGTGGGTCAAGCGGTAG
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Synonyms
Publications