NO05G02860.3, NO05G02860.3 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02860.3
Unique Name	NO05G02860.3
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2038
Alignment location	chr5:749747..752193 +

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Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:749747..752193 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

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BLAST of NO05G02860.3 vs.
Match: EWM28148.1 (decaprenyl-diphosphate synthase subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 520.8 bits (1340), Expect = 3.700e-144
Identity = 266/327 (81.35%), Postives = 293/327 (89.60%), Query Frame = 0

Query:    8 DMQEDLALDLSRRPRPELSSSWVEAAQRVDPFKLVESDMRSLSAGIKSLLGTDHPVLEACAKYLFERDGGKKIRPTMVLLVARAAAAHAPRSGSNVNGHHASDPESPGPLPSQKRLAEITEMIHTASLFHDDVIDEADARRGVPSINKLYGNKMAILAGDFLLARASVSLARLRNVEVVELLSTVIEHLVKGEVMQSRPQALLDGSGATDDGRAALEYYLHKNYYKTGSLMANSCRAAVLLAGHGEALQAQAFAYGRHVGLAFQLVDDVLDFEQSSEILGKPALNDLRQGLATAPVLLAAQRFPREVAELIKRKFRSEGDVEKALEL 335
            +++EDLALDL R+PR +L + W  AA+ VDPFK+VESDMRSLSAGIKSLLG+DHPVLEACAKY FE DGGKKIRPTMVLL++RA AAHAP  G N +    S  ES  PLPSQKRLAEITEMIHTASLFHDDVIDEAD RRGVPSINK+YGNKMAILAGDFLLARASVSLARLRN+EVVELLSTVIEHLVKGEVMQSRPQAL+DGSG  ++G+AALEYYLHKN+YKTGSLMANSCRAAVLLAG G+ALQ QAFAYGRHVGLAFQLVDDVLDFEQ+SE LGKPALNDLRQGLATAPVLLAA+ FP EV +++KRKF SEGDVE+  E+
Sbjct:  113 ELEEDLALDLQRKPRLDLLAGWAGAARGVDPFKIVESDMRSLSAGIKSLLGSDHPVLEACAKYFFELDGGKKIRPTMVLLISRAVAAHAPAQGVNGSRAFTSTSESSTPLPSQKRLAEITEMIHTASLFHDDVIDEADERRGVPSINKIYGNKMAILAGDFLLARASVSLARLRNIEVVELLSTVIEHLVKGEVMQSRPQALVDGSGTGENGQAALEYYLHKNFYKTGSLMANSCRAAVLLAGGGDALQNQAFAYGRHVGLAFQLVDDVLDFEQTSETLGKPALNDLRQGLATAPVLLAARTFPDEVGDMVKRKFASEGDVERVREM 439

The following BLAST results are available for this feature:

BLAST of NO05G02860.3 vs.

BLAST of NO05G02860.3 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28148.1	3.700e-144	81.35	decaprenyl-diphosphate synthase subunit 1 [Nannoch...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02860	NO05G02860	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02860.3	NO05G02860.3-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02860.3.cds1	NO05G02860.3.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02860.3.cds2	NO05G02860.3.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02860.3.cds3	NO05G02860.3.cds3	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02860.3.cds4	NO05G02860.3.cds4	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:749747..752193+
coding sequence from alignment at chr5:749747..752193+

mRNA sequence

>NO05G02860.3 ID=NO05G02860.3|Name=NO05G02860.3|organism=Nannochloropsis oceanica|type=mRNA|length=2038bp
ACAGGACGATCGGGCCTCCACAACGCCACTAGACCGTGCACACGCCTTTC
AAACCCACTGCGTGGCGGATTCAAGGAAAGGTCTAGAGAGCCATGGCCCC
TACATGGAGAGGAGGGGTCCAAGGACTCCAAGCTCTCGTGCAGCATTGTT
CCACCGGCGGGCGGTTGATGGCCCGCCCCAACCCAGGAACCTCCTACGCT
GCGGCCTCACACATCAATGGCAGCTCCACGCTCTTTGATACGCGATTGTA
TTCTAGTGAAGGCAGCACACGGGGCATAGGTAAGCCTAGAACAGCTAGCA
CCCTGAACAGTAGCGAGCCGAAATACATATCTCCTGCCTCTTTCTTGTCC
TTTGCCCCATCTGGGCACATTGCCACGACCTAACGGACCAGTGCCTACCT
CTCTCTAGTAAAGAAGAGTGCCCATTATGTAGAACATGAAAATATGCCAC
ATTCTCAAAACCACGATTTATCTTTCACAACAAATGTCTTCAATCTTCAA
TCCCCTCTCATCTGTGTCCCTGCGCAGGCCAACCTAGTTGGGCTCGGACG
GCCGCGGATGCCTCGATCAATGTTCTGGTAAACGCAGTAACACGGCCAGG
AGTGGACGATCCGACGCTGAAGGTGGCTGATCCTCGACAAACAGGGATGG
AGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTTGGACTTGTCT
CGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAGCAGCACAGAG
GGTCGATCCATTCAAGTTGGTAGAAAGCGATATGAGAAGTCTATCTGCCG
GGATCAAGTCACTGCTGGGCACCGACCACCCCGTGCTAGAAGCCTGTGCC
AAATACCTCTTCGAGCGGGACGGGGGCAAAAAGATCCGTCCGACTATGGT
CTTACTAGTCGCACGGGCCGCCGCCGCGCATGCTCCCAGATCAGGGTCCA
ATGTGAACGGTCATCACGCTTCAGATCCGGAGTCCCCTGGGCCCTTGCCC
TCCCAGAAACGCCTGGCAGAGATCACAGAGATGATTCATACAGCCAGCCT
GTTTCACGACGATGTCATTGATGAAGCCGATGCGCGGCGGGGCGTCCCTT
CCATCAACAAATTGTATGGAAACAAAATGGCGATTTTGGCGGGGGACTTC
CTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGCTGCGGAATGTCGAGGT
GGTAGAGCTTTTGTCTACGGTCATCGAGCACCTGGTCAAGGGTGAAGTAA
TGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAGTGGAGCTACGGATGAT
GGGCGGGCGGCGTTGGAGTACTATTTGCACAAGAATTACTACAAAACAGG
CTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTGTTATTGGCCGGGCACG
GAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGGCAGGCATGTGGGACTG
GCCTTTCAGTTGGTGGACGATGTGTTGGATTTCGAGCAGTCGTCTGAGAT
ATTAGGCAAACCCGCGTTGAACGACCTGAGACAGGGCCTGGCGACGGCCC
CTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGAGGTGGCGGAGCTGATT
AAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGAAGGCACTCGAGTTGGT
AGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCATCGGTACAGG
CGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTCCCCCGCTCGG
GACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCACGAGTTAAAC
CATAGAGGCACCAGACGGGAAGACCGGAATAACCTGGTGAAGCTGGTGGT
AGGCAGGGGGGAGGAATCGGGGAGAGTGCCATATCTTGAGAGAGGGGACC
AAATGACTGTTGATAACCTGCCCATTGGCTTTTCCTCCTTGTTGCCGCCG
CCAGCGCAACACCCATCCACTCACTCACACAAATCTTTCAAATGTATCAA
ACAAAGATAGAACGGAAACAGCTACCATCACATGATCA

protein sequence of NO05G02860.3

>NO05G02860.3-protein ID=NO05G02860.3-protein|Name=NO05G02860.3|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MEVEGGYDMQEDLALDLSRRPRPELSSSWVEAAQRVDPFKLVESDMRSLS
AGIKSLLGTDHPVLEACAKYLFERDGGKKIRPTMVLLVARAAAAHAPRSG
SNVNGHHASDPESPGPLPSQKRLAEITEMIHTASLFHDDVIDEADARRGV
PSINKLYGNKMAILAGDFLLARASVSLARLRNVEVVELLSTVIEHLVKGE
VMQSRPQALLDGSGATDDGRAALEYYLHKNYYKTGSLMANSCRAAVLLAG
HGEALQAQAFAYGRHVGLAFQLVDDVLDFEQSSEILGKPALNDLRQGLAT
APVLLAAQRFPREVAELIKRKFRSEGDVEKALELVERGDGLRQAKDLASV
QAEQAMEAALTMHPSPARDGLIKLASLVVHRTS*

mRNA from alignment at chr5:749747..752193+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02860.3 ID=NO05G02860.3|Name=NO05G02860.3|organism=Nannochloropsis oceanica|type=mRNA|length=2447bp|location=Sequence derived from alignment at chr5:749747..752193+ (Nannochloropsis oceanica)
ACAGGACGATCGGGCCTCCACAACGCCACTAGACCGTGCACACGCCTTTC
AAACCCACTGCGTGGCGGATTCAAGGAAAGGTCTAGAGAGCCATGGCCCC
TACATGGAGAGGAGGGGTCCAAGGACTCCAAGCTCTCGTGCAGCATTGTT
CCACCGGCGGGCGGTTGATGGCCCGCCCCAACCCAGGAACCTCCTACGCT
GCGGCCTCACACATCAATGGCAGCTCCACGCTCTTTGATACGCGATTGTA
TTCTAGTGAAGGCAGCACACGGGGCATAGGTAAGCCTAGAACAGCTAGCA
CCCTGAACAGTAGCGAGCCGAAATACATATCTCCTGCCTCTTTCTTGTCC
TTTGCCCCATCTGGGCACATTGCCACGACCTAACGGACCAGTGCCTACCT
CTCTCTAGTAAAGAAGAGTGCCCATTATGTAGAACATGAAAATATGCCAC
ATTCTCAAAACCACGATTTATCTTTCACAACAAATGTCTTCAATCTTCAA
TCCCCTCTCATCTGTGTCCCTGCGCAGGCCAACCTAGTTGGGCTCGGACG
GCCGCGGATGCCTCGATCAATGTTCTGGTAAACGCAGTAACACGGCCAGG
AGTGGACGATCCGACGCTGAAGGTGGCTGATCCTCGACAAACAGGGATGG
AGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTTGGACTTGTCT
CGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAGCAGCACAGAG
GGTCGATCCATTCAAGGTGCGCTAAGCTACGATCCAAATCGCTGCGATGT
CTTCTACAACGTATCACTCATCTTCTCTCCTTCCCTCATTTCCTTTCAGT
TGGTAGAAAGCGATATGAGAAGTCTATCTGCCGGGATCAAGGTATGTCTA
TGACTTTGCAATCCCGCGCTGACACCATGACGAAGCGAGAAAGAGTATGA
GAGGAGTTACAGCAATTTATTTTGTTTGCCATAGCCCTAGGCTCGATCCC
ACGTAAAAGTCGTGCTGACTCTTGCCCCTTTTTCCTCATCCTCTCTCTCC
CCCACTGTCCCCCACTCCCTCCAGTCACTGCTGGGCACCGACCACCCCGT
GCTAGAAGCCTGTGCCAAATACCTCTTCGAGCGGGACGGGGGCAAAAAGA
TCCGTCCGACTATGGTCTTACTAGTCGCACGGGCCGCCGCCGCGCATGCT
CCCAGATCAGGGTCCAATGTGAACGGTCATCACGCTTCAGATCCGGAGTC
CCCTGGGCCCTTGCCCTCCCAGAAACGCCTGGCAGAGATCACAGAGATGA
TTCATACAGCCAGCCTGTTTCACGACGATGTCATTGATGAAGCCGATGCG
CGGCGGGGCGTCCCTTCCATCAACAAATTGTATGGAAACAAAATGGCGAT
TTTGGCGGGGGACTTCCTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGC
TGCGGAATGTCGAGGTGGTAGAGCTTTTGTCTACGGTCATCGAGCACCTG
GTCAAGGGTGAAGTAATGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAG
TGGAGCTACGGATGATGGGCGGGCGGCGTTGGAGTACTATTTGCACAAGA
ATTACTACAAAACAGGCTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTG
TTATTGGCCGGGCACGGAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGG
CAGGCATGTGGGACTGGCCTTTCAGTTGGTGGACGATGTGTTGGATTTCG
AGCAGTCGTCTGAGATATTAGGCAAACCCGCGTTGAACGACCTGAGACAG
GGCCTGGCGACGGCCCCTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGA
GGTGGCGGAGCTGATTAAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGA
AGGTAAGGAGAGGAAGAAAAGGACGTGGTGGTGCGGTTTGTCGTCTCTTG
AAAAAGTGGATGCATCTTACGCACGCCTCTTCTTTTCTGCGTGACATTTT
ATACGTATTGAAAATACTTTTCATTCTCCAATTGTCTTTCTACAGGCACT
CGAGTTGGTAGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCAT
CGGTACAGGCGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTCC
CCCGCTCGGGACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCAC
GAGTTAAACCATAGAGGCACCAGACGGGAAGACCGGAATAACCTGGTGAA
GCTGGTGGTAGGCAGGGGGGAGGAATCGGGGAGAGTGCCATATCTTGAGA
GAGGGGACCAAATGACTGTTGATAACCTGCCCATTGGCTTTTCCTCCTTG
TTGCCGCCGCCAGCGCAACACCCATCCACTCACTCACACAAATCTTTCAA
ATGTATCAAACAAAGATAGAACGGAAACAGCTACCATCACATGATCA

Coding sequence (CDS) from alignment at chr5:749747..752193+

>NO05G02860.3 ID=NO05G02860.3|Name=NO05G02860.3|organism=Nannochloropsis oceanica|type=CDS|length=1152bp|location=Sequence derived from alignment at chr5:749747..752193+ (Nannochloropsis oceanica)
ATGGAGGTGGAAGGGGGATATGATATGCAGGAAGACTTGGCCTTGGACTT
GTCTCGAAGACCTCGCCCGGAGCTGTCGTCGAGCTGGGTGGAAGCAGCAC
AGAGGGTCGATCCATTCAAGTTGGTAGAAAGCGATATGAGAAGTCTATCT
GCCGGGATCAAGTCACTGCTGGGCACCGACCACCCCGTGCTAGAAGCCTG
TGCCAAATACCTCTTCGAGCGGGACGGGGGCAAAAAGATCCGTCCGACTA
TGGTCTTACTAGTCGCACGGGCCGCCGCCGCGCATGCTCCCAGATCAGGG
TCCAATGTGAACGGTCATCACGCTTCAGATCCGGAGTCCCCTGGGCCCTT
GCCCTCCCAGAAACGCCTGGCAGAGATCACAGAGATGATTCATACAGCCA
GCCTGTTTCACGACGATGTCATTGATGAAGCCGATGCGCGGCGGGGCGTC
CCTTCCATCAACAAATTGTATGGAAACAAAATGGCGATTTTGGCGGGGGA
CTTCCTATTGGCCCGCGCCTCGGTGAGCCTGGCCCGGCTGCGGAATGTCG
AGGTGGTAGAGCTTTTGTCTACGGTCATCGAGCACCTGGTCAAGGGTGAA
GTAATGCAATCGAGGCCTCAGGCCTTGCTGGATGGGAGTGGAGCTACGGA
TGATGGGCGGGCGGCGTTGGAGTACTATTTGCACAAGAATTACTACAAAA
CAGGCTCGTTGATGGCAAATTCGTGCCGGGCCGCCGTGTTATTGGCCGGG
CACGGAGAAGCTCTACAGGCGCAGGCGTTTGCGTATGGCAGGCATGTGGG
ACTGGCCTTTCAGTTGGTGGACGATGTGTTGGATTTCGAGCAGTCGTCTG
AGATATTAGGCAAACCCGCGTTGAACGACCTGAGACAGGGCCTGGCGACG
GCCCCTGTCCTCTTGGCTGCACAAAGGTTCCCACGGGAGGTGGCGGAGCT
GATTAAGCGCAAGTTTCGATCTGAGGGGGATGTGGAGAAGGCACTCGAGT
TGGTAGAACGCGGCGATGGGCTGCGGCAAGCGAAAGATCTAGCATCGGTA
CAGGCGGAGCAGGCTATGGAAGCGGCTTTGACCATGCATCCTTCCCCCGC
TCGGGACGGTCTTATCAAGCTGGCCTCGCTCGTTGTACACCGCACGAGTT
AA

Synonyms

Publications