NO05G02830.1, NO05G02830.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02830.1
Unique NameNO05G02830.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1617
Alignment locationchr5:740821..742608 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:740821..742608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02830.1 vs.
Match: EWM28222.1 (c2h2 zinc finger protein [Nannochloropsis gaditana])

HSP 1 Score: 564.7 bits (1454), Expect = 2.900e-157
Identity = 305/505 (60.40%), Postives = 362/505 (71.68%), Query Frame = 0 
Query:    1 MKRKHDEILSTAALKVLVLGDGNLSYSLGLAERLTGAQVLATSYDDSQEVFTKYTESHATVARLEALGPRVRVLHGVDALDVQESLRQAQAQAQGVKKEKKGEFQEQLQGRDANDIAARDSESTKALMIFDHVVFNHPHTGWEDMHRHTALLAHFLESCKAVLAPPSLTEGQEGGQAHVTLAGDQCKRWKLFETAERLGYELRHICDFYRQFGPNPVPAQIKRHQSGKSFRLRGLPSFTYTFTLK--SKKSSHPEVSYSPHFLPSSSISILWKHSYDAVEHEAAMTIKPAAGDGTTTGPLSKDAPITGVIKSVKCHACEKRFRGPKDLRKHMIDAHETGDDSEAEDLACEPCSRSFKDKTALEQHQRAKHSGKFQNLKPDWCTVEAAAITSNEKGDTKPVAVQPSLHFKGVDRTTYDARAIDKKQLQQQQQEQRKFVLCPVCDYYVTAPGSTAEHLADLRPPERPTYVCHGCDRTFREERALKQHANACWPFEEKMRGDTDSEEK 504
            MKRKH E L T  L+VLVLGDGNLSYSLGLAERL GAQ+LATS+D+ QE+  KYTESHATV RLEALG RVRV++GVDAL++ E+LR+ Q +    + ++   F+E      +N     D      L +FDHV+FNHPHTGWED+HRH ALLAHFLES KAVLA  S T+G EGGQ HVTLAGDQCKRWKL +TA RLG++LRHICDFYRQFGP+  P  IKRHQSGKSFR+RGLPSFTY+FTL+  S  S+    +YS  F PS S   LW+H+YD  EHEAAMTI+P    G   G  SK APIT V+KS+KC  CEK FRGPKDLRKHM DAH+     +AE L CE C R F+D+ AL QHQRAKHSG+FQ+LKPDW T   AA+  +E  ++     QPSLHF+GV++  Y+A   D+++           VLC VCDYYV +   TAEHLADLRPPERP Y C  CDRTFRE RALKQHANACWPF+     +  ++EK
Sbjct:    1 MKRKHAETLCTKPLRVLVLGDGNLSYSLGLAERLPGAQLLATSFDNPQELHRKYTESHATVTRLEALGARVRVIYGVDALNILETLRRVQME----EGKRADSFREPPHDSVSNCARTADGHP---LEVFDHVIFNHPHTGWEDIHRHRALLAHFLESAKAVLAC-STTQGTEGGQVHVTLAGDQCKRWKLLQTAARLGFKLRHICDFYRQFGPDHPPVDIKRHQSGKSFRIRGLPSFTYSFTLEEVSYYSATANAAYS--FPPSPS---LWRHAYDPEEHEAAMTIRP-GNKGVAGG--SKGAPITDVVKSIKCDTCEKCFRGPKDLRKHMGDAHDK-PPVQAEGLPCEACGRDFRDEAALGQHQRAKHSGRFQDLKPDWST---AALNVSETDESN---AQPSLHFQGVEKEAYEASRADREE---------DMVLCTVCDYYVAS--RTAEHLADLRPPERPIYNCRSCDRTFRELRALKQHANACWPFKNGHGIERGNKEK 471
The following BLAST results are available for this feature:
BLAST of NO05G02830.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28222.12.900e-15760.40c2h2 zinc finger protein [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02830NO05G02830Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02830.1NO05G02830.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02830.1.cds1NO05G02830.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02830.1.cds2NO05G02830.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02830.1 ID=NO05G02830.1|Name=NO05G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
ACAGGTGCCATGAAGAGGAAGCACGATGAGATTCTGAGCACCGCCGCGCT
CAAGGTGTTGGTGCTTGGGGATGGTAACCTGTCGTACAGTCTCGGCTTGG
CCGAACGCCTGACGGGTGCGCAGGTGCTGGCGACCTCGTACGACGACTCG
CAGGAAGTATTCACGAAATATACTGAGAGCCACGCCACGGTGGCGCGTTT
GGAAGCGCTGGGTCCGCGTGTACGTGTGCTACATGGTGTGGACGCCTTGG
ATGTTCAGGAGAGCTTGAGACAGGCACAGGCACAGGCCCAGGGGGTCAAA
AAAGAGAAGAAGGGTGAATTTCAGGAGCAGTTGCAAGGAAGAGATGCAAA
TGACATAGCGGCCAGGGACTCGGAGAGCACCAAGGCATTGATGATCTTCG
ATCACGTGGTATTCAACCATCCGCACACCGGCTGGGAGGACATGCATCGA
CACACCGCTTTGTTGGCCCACTTCTTGGAAAGCTGCAAAGCCGTCTTGGC
GCCGCCGTCTCTCACGGAAGGTCAGGAGGGGGGGCAAGCCCACGTGACGC
TGGCTGGAGACCAGTGCAAGCGCTGGAAACTTTTCGAGACGGCGGAACGC
TTGGGCTATGAGTTGCGGCACATCTGCGACTTCTATCGTCAATTTGGTCC
CAACCCAGTGCCCGCGCAAATCAAGCGACATCAAAGCGGGAAGTCTTTTC
GCCTGCGTGGGCTGCCGAGTTTCACTTATACTTTTACTTTGAAGAGTAAG
AAATCGTCTCATCCCGAGGTCTCCTATTCCCCCCACTTCCTCCCCTCTTC
CTCCATCTCCATCCTTTGGAAACATTCTTACGATGCCGTGGAGCACGAAG
CTGCCATGACGATCAAGCCAGCGGCGGGAGACGGGACCACGACAGGCCCT
CTCAGCAAGGACGCGCCCATCACCGGCGTCATCAAGTCTGTCAAGTGCCA
TGCGTGCGAGAAACGCTTTCGAGGTCCTAAGGACTTGCGCAAGCATATGA
TTGATGCCCATGAGACTGGTGATGATTCAGAGGCGGAAGATCTGGCATGC
GAGCCCTGTTCTCGCAGCTTTAAGGATAAGACGGCCCTAGAGCAACATCA
ACGTGCCAAGCACTCTGGCAAATTTCAAAATCTCAAGCCTGACTGGTGCA
CGGTGGAAGCAGCAGCCATCACCAGTAACGAAAAGGGGGACACAAAGCCG
GTGGCAGTCCAACCGTCCCTGCATTTTAAGGGGGTGGACAGGACTACGTA
CGATGCGAGGGCTATTGATAAAAAACAGCTGCAGCAACAGCAGCAGGAGC
AGCGGAAATTTGTGCTCTGTCCGGTGTGCGATTATTATGTGACTGCCCCA
GGCAGCACTGCCGAGCACTTGGCTGATCTCCGGCCGCCCGAGCGTCCCAC
ATACGTCTGCCACGGGTGCGACCGCACTTTCCGGGAGGAGCGGGCTCTGA
AGCAGCACGCCAATGCATGCTGGCCGTTTGAGGAGAAGATGAGAGGAGAC
ACGGACAGTGAGGAAAAGGAAACAGTATAAGGAAGAGGATAAACGAACTT
AAATAAAAGAACCAAGAAAACATAGATCGCACAGCAAGTGCGTATGGGCC
GGGGGAGGTCACAATTG
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protein sequence of NO05G02830.1

>NO05G02830.1-protein ID=NO05G02830.1-protein|Name=NO05G02830.1|organism=Nannochloropsis oceanica|type=polypeptide|length=507bp
MKRKHDEILSTAALKVLVLGDGNLSYSLGLAERLTGAQVLATSYDDSQEV
FTKYTESHATVARLEALGPRVRVLHGVDALDVQESLRQAQAQAQGVKKEK
KGEFQEQLQGRDANDIAARDSESTKALMIFDHVVFNHPHTGWEDMHRHTA
LLAHFLESCKAVLAPPSLTEGQEGGQAHVTLAGDQCKRWKLFETAERLGY
ELRHICDFYRQFGPNPVPAQIKRHQSGKSFRLRGLPSFTYTFTLKSKKSS
HPEVSYSPHFLPSSSISILWKHSYDAVEHEAAMTIKPAAGDGTTTGPLSK
DAPITGVIKSVKCHACEKRFRGPKDLRKHMIDAHETGDDSEAEDLACEPC
SRSFKDKTALEQHQRAKHSGKFQNLKPDWCTVEAAAITSNEKGDTKPVAV
QPSLHFKGVDRTTYDARAIDKKQLQQQQQEQRKFVLCPVCDYYVTAPGST
AEHLADLRPPERPTYVCHGCDRTFREERALKQHANACWPFEEKMRGDTDS
EEKETV*
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mRNA from alignment at chr5:740821..742608+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02830.1 ID=NO05G02830.1|Name=NO05G02830.1|organism=Nannochloropsis oceanica|type=mRNA|length=1788bp|location=Sequence derived from alignment at chr5:740821..742608+ (Nannochloropsis oceanica)
ACAGGTGCCATGAAGAGGAAGCACGATGAGATTCTGAGCACCGCCGCGCT
CAAGGTGTTGGTGCTTGGGGATGGTAACCTGTCGTACAGTCTCGGCTTGG
CCGAACGCCTGACGGGTGCGCAGGTGCTGGCGACCTCGTACGACGACTCG
CAGGAAGTATTCACGAAATATACTGAGAGCCACGCCACGGTGGCGCGTTT
GGAAGCGCTGGGTCCGCGTGTACGTGTGCTACATGGTGTGGACGCCTTGG
ATGTTCAGGAGAGCTTGAGACAGGCACAGGCACAGGCCCAGGGGGTCAAA
AAAGAGAAGAAGGGTGAATTTCAGGAGCAGTTGCAAGGAAGAGATGCAAA
TGACATAGCGGCCAGGGACTCGGAGAGCACCAAGGCATTGATGATCTTCG
ATCACGTGGTATTCAACCATCCGCACACCGGCTGGGAGGACATGCATCGA
CACACCGCTTTGTTGGCCCACTTCTTGGAAAGCTGCAAAGCCGTCTTGGC
GCCGCCGTCTCTCACGGAAGGTCAGGAGGGGGGGCAAGCCCACGTGACGC
TGGCTGGAGACCAGTGCAAGCGCTGGAAACTTTTCGAGACGGCGGAACGC
TTGGGCTATGAGTTGCGGCACATCTGCGACTTCTATCGTCAATTTGGTCC
CAACCCAGTGCCCGCGCAAATCAAGCGACATCAAAGCGGGAAGTCTTTTC
GCCTGCGTGGGCTGCCGAGTTTCACTTATACTTTTACTTTGAAGAGTAAG
AAATCGTCTCATCCCGAGGTCTCCTATTCCCCCCACTTCCTCCCCTCTTC
CTCCATCTCCATCCTTTGGAAACATTCTTACGATGCCGTGGAGCACGAAG
CTGCCATGACGATCAAGCCAGCGGCGGGAGACGGGACCACGACAGGCCCT
CTCAGCAAGGACGCGCCCATCACCGGCGTCATCAAGTCTGTCAAGTGCCA
TGCGTGCGAGAAACGCTTTCGAGGTCCTAAGGACTTGCGCAAGCATATGA
TTGATGCCCATGAGACTGGTGATGATTCAGAGGTAAGTCAGCAAGGACAG
GCAAGGAGGGTTTTGCGGGGCTTCTCTCATACTTTGAGAGGGCCTTGTTC
CCTAGCCGATATTTCTTTGTTTAGCGTATTTCTTTTACGTAAATCTATAT
CAATTACTGATGTCCACATCCACAAATCCACCAAACTATGCAACCAAATC
CAGGCGGAAGATCTGGCATGCGAGCCCTGTTCTCGCAGCTTTAAGGATAA
GACGGCCCTAGAGCAACATCAACGTGCCAAGCACTCTGGCAAATTTCAAA
ATCTCAAGCCTGACTGGTGCACGGTGGAAGCAGCAGCCATCACCAGTAAC
GAAAAGGGGGACACAAAGCCGGTGGCAGTCCAACCGTCCCTGCATTTTAA
GGGGGTGGACAGGACTACGTACGATGCGAGGGCTATTGATAAAAAACAGC
TGCAGCAACAGCAGCAGGAGCAGCGGAAATTTGTGCTCTGTCCGGTGTGC
GATTATTATGTGACTGCCCCAGGCAGCACTGCCGAGCACTTGGCTGATCT
CCGGCCGCCCGAGCGTCCCACATACGTCTGCCACGGGTGCGACCGCACTT
TCCGGGAGGAGCGGGCTCTGAAGCAGCACGCCAATGCATGCTGGCCGTTT
GAGGAGAAGATGAGAGGAGACACGGACAGTGAGGAAAAGGAAACAGTATA
AGGAAGAGGATAAACGAACTTAAATAAAAGAACCAAGAAAACATAGATCG
CACAGCAAGTGCGTATGGGCCGGGGGAGGTCACAATTG
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Coding sequence (CDS) from alignment at chr5:740821..742608+

>NO05G02830.1 ID=NO05G02830.1|Name=NO05G02830.1|organism=Nannochloropsis oceanica|type=CDS|length=1521bp|location=Sequence derived from alignment at chr5:740821..742608+ (Nannochloropsis oceanica)
ATGAAGAGGAAGCACGATGAGATTCTGAGCACCGCCGCGCTCAAGGTGTT
GGTGCTTGGGGATGGTAACCTGTCGTACAGTCTCGGCTTGGCCGAACGCC
TGACGGGTGCGCAGGTGCTGGCGACCTCGTACGACGACTCGCAGGAAGTA
TTCACGAAATATACTGAGAGCCACGCCACGGTGGCGCGTTTGGAAGCGCT
GGGTCCGCGTGTACGTGTGCTACATGGTGTGGACGCCTTGGATGTTCAGG
AGAGCTTGAGACAGGCACAGGCACAGGCCCAGGGGGTCAAAAAAGAGAAG
AAGGGTGAATTTCAGGAGCAGTTGCAAGGAAGAGATGCAAATGACATAGC
GGCCAGGGACTCGGAGAGCACCAAGGCATTGATGATCTTCGATCACGTGG
TATTCAACCATCCGCACACCGGCTGGGAGGACATGCATCGACACACCGCT
TTGTTGGCCCACTTCTTGGAAAGCTGCAAAGCCGTCTTGGCGCCGCCGTC
TCTCACGGAAGGTCAGGAGGGGGGGCAAGCCCACGTGACGCTGGCTGGAG
ACCAGTGCAAGCGCTGGAAACTTTTCGAGACGGCGGAACGCTTGGGCTAT
GAGTTGCGGCACATCTGCGACTTCTATCGTCAATTTGGTCCCAACCCAGT
GCCCGCGCAAATCAAGCGACATCAAAGCGGGAAGTCTTTTCGCCTGCGTG
GGCTGCCGAGTTTCACTTATACTTTTACTTTGAAGAGTAAGAAATCGTCT
CATCCCGAGGTCTCCTATTCCCCCCACTTCCTCCCCTCTTCCTCCATCTC
CATCCTTTGGAAACATTCTTACGATGCCGTGGAGCACGAAGCTGCCATGA
CGATCAAGCCAGCGGCGGGAGACGGGACCACGACAGGCCCTCTCAGCAAG
GACGCGCCCATCACCGGCGTCATCAAGTCTGTCAAGTGCCATGCGTGCGA
GAAACGCTTTCGAGGTCCTAAGGACTTGCGCAAGCATATGATTGATGCCC
ATGAGACTGGTGATGATTCAGAGGCGGAAGATCTGGCATGCGAGCCCTGT
TCTCGCAGCTTTAAGGATAAGACGGCCCTAGAGCAACATCAACGTGCCAA
GCACTCTGGCAAATTTCAAAATCTCAAGCCTGACTGGTGCACGGTGGAAG
CAGCAGCCATCACCAGTAACGAAAAGGGGGACACAAAGCCGGTGGCAGTC
CAACCGTCCCTGCATTTTAAGGGGGTGGACAGGACTACGTACGATGCGAG
GGCTATTGATAAAAAACAGCTGCAGCAACAGCAGCAGGAGCAGCGGAAAT
TTGTGCTCTGTCCGGTGTGCGATTATTATGTGACTGCCCCAGGCAGCACT
GCCGAGCACTTGGCTGATCTCCGGCCGCCCGAGCGTCCCACATACGTCTG
CCACGGGTGCGACCGCACTTTCCGGGAGGAGCGGGCTCTGAAGCAGCACG
CCAATGCATGCTGGCCGTTTGAGGAGAAGATGAGAGGAGACACGGACAGT
GAGGAAAAGGAAACAGTATAA
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Synonyms
Publications