NO05G02810.1, NO05G02810.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02810.1
Unique NameNO05G02810.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1986
Alignment locationchr5:735092..737863 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:735092..737863 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02810.1 vs.
Match: XP_001420687.1 (DMT family transporter: drug/metabolite [Ostreococcus lucimarinus CCE9901]; ABO98980.1 DMT family transporter: drug/metabolite [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 115.5 bits (288), Expect = 6.100e-22
Identity = 91/272 (33.46%), Postives = 138/272 (50.74%), Query Frame = 0 
Query:    2 MRVSLALPFLFFVAWKEG-SLPKIDRRNARYMLLLGLLGVALPQTLVFEADKLAGPNAVAIMTPAAPVNAAIFASALKLERLTRVKVGGVSLAVAGALVILWPDKIALTNGRPDEIPAGICVIVIQTMWYAALLVALKIKLQTHPNPFGLYAYASLTGAIVIAFAGVVSGSIYFDPNIVPRSAWFAVLNCGFAISFFAHACQSWAVAHTSASFPSLFNCLSPSFTGFLAHVFLEERL------GLPSDIMGLPLNVSGLFAVVFSKMRLEGP 267
            +R++LALPFL   A KEG SLP   R  A +++ +G + +     LVF A+  +GP  VA + P  PV+ A+ +  + LER+TRVK  GV +  AG +  L   +I  T G        I +++ QT  YA  +V L +  +T+P P  L+ + +   A  +     +      D + VP SAW AV+  G+  S FAH+  SWAVA      P++++ +   FT  L+ VFL ERL      G+   I+G+ L     +A      R + P
Sbjct:   67 LRLALALPFLAISARKEGGSLPW--RAVATWVVPMGAM-IGAAYLLVFVANARSGPTLVACVQPIMPVSVAVMSYVIGLERMTRVKALGVIVVFAGTVTALRAYEIFQTGGMNF---LDIFLLLSQTNSYAVYVVMLGVATKTYPYPL-LFLFLATAVAEFVVLLIAIPAFARLDVSRVPASAWGAVVFAGWGSSVFAHSLNSWAVARVKGVLPTVYSGVQVIFTIVLSRVFLRERLPWDRGVGIAVTILGVCLVARAKYAETPDATRRDAP 331
The following BLAST results are available for this feature:
BLAST of NO05G02810.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
XP_001420687.16.100e-2233.46DMT family transporter: drug/metabolite [Ostreococ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02810NO05G02810Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02810.1NO05G02810.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02810.1.cds1NO05G02810.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02810.1.cds2NO05G02810.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02810.1.cds3NO05G02810.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02810.1.cds4NO05G02810.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02810.1 ID=NO05G02810.1|Name=NO05G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=1986bp
ATGATGCGGGTCTCGTTGGCCTTGCCCTTCCTCTTCTTTGTCGCGTGGAA
GGAAGGCTCCTTACCCAAGATTGACCGACGGAATGCCCGCTACATGCTTT
TACTAGGATTGCTAGGGGTTGCCTTGCCCCAGACTCTCGTGTTTGAGGCC
GACAAACTCGCAGGGCCCAACGCTGTTGCCATCATGACTCCAGCTGCCCC
AGTCAATGCCGCCATCTTCGCCTCGGCCCTTAAACTAGAACGACTCACCC
GCGTCAAGGTGGGGGGAGTTTCCCTGGCCGTGGCAGGTGCCTTGGTCATT
CTCTGGCCGGACAAAATAGCCTTGACCAATGGGCGTCCTGACGAAATACC
CGCGGGGATTTGCGTGATTGTGATACAGACCATGTGGTATGCCGCGCTTT
TGGTCGCATTAAAAATCAAGCTGCAAACACATCCAAACCCTTTCGGTCTA
TATGCTTATGCTTCTTTGACGGGCGCAATCGTTATCGCATTCGCGGGTGT
TGTGAGTGGAAGTATCTATTTTGATCCAAACATTGTGCCCCGGAGTGCGT
GGTTCGCTGTCCTCAATTGCGGCTTCGCCATTTCCTTCTTTGCGCATGCC
TGTCAGTCCTGGGCAGTCGCGCACACCTCAGCATCTTTCCCCTCTCTCTT
CAATTGCCTGTCCCCCTCTTTCACCGGCTTTCTCGCCCATGTTTTTCTTG
AGGAAAGGTTGGGCTTGCCGAGCGACATCATGGGTCTACCATTAAACGTG
TCAGGTCTCTTTGCCGTCGTTTTTTCCAAGATGAGGCTAGAGGGGCCCAT
GTCAGCAATCGCAACTGCCTCAGACAAGGATACAGTCAATGAGATTGGGA
TGGATGCAGTCCTTCCCGATACAGTAGCACCACCAGCTGGTAGACTGAGC
CTTAGTCGGATGGATGATCTGACTCTGGACCCCGCCGAGTACTTGGCAAC
CAAACGCCTCGGGTCTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAG
TCCCTCCTCCGAAGCCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGA
TGCGTTTGCTGCGAAACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCA
GTTCTTGACGTCCAAGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCC
CGTTGGTTTTGTCAAAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTA
GTCCCGCCCTTTGGCTTGAACATCTGCGCGAACGACGGACCACGGACAGC
AAAAGATTGTCACCACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGC
GGACGGAGGGTGATGACCACGTGCTTTATTGGTTAGATGTTGGAAAACCT
CAGCGCATTTTAGAGGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGG
CGACGGTGCGGCCCGAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTT
CGACACTTGCCTCGTTAACGGCACCATCGAATGCACAGATCTCTAGCTTG
AACAGCAATGGCAGGACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAA
AGAGGACCGAGAAGAAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGC
GCCTGGCAGCCACCCTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATG
ATTTTGGCGGTATGGCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAA
TGGGATAATACTGCTGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCT
CCGGGGTGGGCCTATGGATATGGCAGATGTATTCTGATCGCCAGCGCCTA
ATGGTTCCGATGCCCACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGG
GAGGGATCCGCAGCATGTGGGCAGCGGCCATGACAGGCACGCACCAGACC
GACCGAGAACGCGCAATATCGAGGAAGCACAGTGCCTAATAGAAAGTGAT
GGCAACAATTACGGTAGCGGCCGGGGTGCACCGTGA
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protein sequence of NO05G02810.1

>NO05G02810.1-protein ID=NO05G02810.1-protein|Name=NO05G02810.1|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp
MMRVSLALPFLFFVAWKEGSLPKIDRRNARYMLLLGLLGVALPQTLVFEA
DKLAGPNAVAIMTPAAPVNAAIFASALKLERLTRVKVGGVSLAVAGALVI
LWPDKIALTNGRPDEIPAGICVIVIQTMWYAALLVALKIKLQTHPNPFGL
YAYASLTGAIVIAFAGVVSGSIYFDPNIVPRSAWFAVLNCGFAISFFAHA
CQSWAVAHTSASFPSLFNCLSPSFTGFLAHVFLEERLGLPSDIMGLPLNV
SGLFAVVFSKMRLEGPMSAIATASDKDTVNEIGMDAVLPDTVAPPAGRLS
LSRMDDLTLDPAEYLATKRLGSLKWLVEPASSSVPPPKPVSLSPDLPVHR
CVCCETQAGIFEQHVAQFLTSKEFATFSTVIRRPLVLSKRGEVRCLDGPL
VPPFGLNICANDGPRTAKDCHHHPRVGYVQQPLRTEGDDHVLYWLDVGKP
QRILEAGGARGEGAQRGDGAARRISAIKSGSECSTLASLTAPSNAQISSL
NSNGRTTSSKQRPSGGKEDREEAERMRAQVRLPRLAATLLASLMGGGVMM
ILAVWQQRLKGDLPRNNGIILLLALYALVGLACSGVGLWIWQMYSDRQRL
MVPMPTASMNRRTRGKGRDPQHVGSGHDRHAPDRPRTRNIEEAQCLIESD
GNNYGSGRGAP*
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mRNA from alignment at chr5:735092..737863-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02810.1 ID=NO05G02810.1|Name=NO05G02810.1|organism=Nannochloropsis oceanica|type=mRNA|length=2772bp|location=Sequence derived from alignment at chr5:735092..737863- (Nannochloropsis oceanica)
ATGATGCGGGTCTCGTTGGCCTTGCCCTTCCTCTTCTTTGTCGCGTGGAA
GGAAGGCTCCTTACCCAAGATTGACCGACGGAATGCCCGCTACATGCTTT
TACTAGGATTGCTAGGGGTTGCCTTGCCCCAGACTCTCGTGTTTGAGGCC
GACAAACTCGCAGGGCCCAACGCTGTTGCCATCATGACTCCAGTTGGTCC
CTATCTCCCTCCCTTCCTCCCTCTCTCCCTCGCATCTTCGATCCCTTTGA
TCGTGTCGAACGTATCGAGTCTGTCATTCTAACGTTTATGTTTCTTCGTG
TTTACCCTTGCTTCACTTCCTCTCAAGGCTGCCCCAGTCAATGCCGCCAT
CTTCGCCTCGGCCCTTAAACTAGAACGACTCACCCGCGTCAAGGTGGGGG
GAGTTTCCCTGGCCGTGGCAGGTGCCTTGGTCATTCTCTGGCCGGACAAA
ATAGCCTTGACCAATGGGCGTCCTGACGAAATACCCGCGGGGATTTGCGT
GATTGTGATACAGACCATGTGGTATGCCGCGCTTTTGGTCGCATTAAAAA
TCAAGCTGCAAACACATCCAAACCCTTTCGGTCTATATGCTTATGCTTCT
TTGACGGGCGCAATCGTTATCGCATTCGCGGGTGTTGTGAGTGGAAGTAT
CTATTTTGATCCAAACATTGTGCCCCGGAGTGCGTGGTTCGCTGTCCTCA
ATTGCGGCTTCGCCATTTCCTTCTTTGCGCATGCCTGTCAGTCCTGGTAC
GGGTTTCTTTCTTGAACGAATGGATGAAGGATTCGAAATTAAGGGATATG
ATGGTGCAGGATGTAAACGACGAATTGAAATTCGCCACTCACACAGTAAA
TGCGATACACATCTTCCAGTTTTACTCTCTCATCCTCTTTCTTAGTGCAG
TGCTTTCGGCTGCCTTACATCAACCCCTAACGCTTCTCAACTGAACCCAC
AGGGCAGTCGCGCACACCTCAGCATCTTTCCCCTCTCTCTTCAATTGCCT
GTCCCCCTCTTTCACCGGCTTTCTCGCCCATGTTTTTCTTGAGGAAAGGT
TGGGCTTGCCGAGCGACATCATGGGTCTACCATTAAACGTGTCAGGTCTC
TTTGCCGTCGTTTTTTCCAAGATGAGGCTAGAGGGGCCCATGTCAGCAAT
CGCAACTGCCTCAGACAAGGATACAGTCAATGAGATTGGGATGGATGCAG
TCCTTCCCGATACAGTAGCACCACCAGCTGGTAGACTGAGCCTTAGTCGG
TCTGGGACGCTCAGACAGTCTCTGAAGAACCTTCCTCACGACCCGCCACA
CCGGCAGCAAATAAGAGACATTATGTGTGTTACAAAGGGGGTTGTAAAGA
AATGGAGAGCGACACTCGGGGGGAGAAAACTATGCGTGCATATACAGACT
TGCAGTGAGAGAGGGGCAATTTTGACAAAGGAATGGAAGGTACCACTTCG
TCATTGCCAAATAAAGCCACGCATACATATGCTGACAAAGAAGGAATAAT
AATATGATTATAATTATTATAAATCCTCACTAGAAGGAGAAAGGCCCCTC
TGCGAGGAAATGGTGGAAATCGGAATACGAGGACGAGTGCCGCATGGGCC
AGCCATGCTCAAGATAGTGCAATCTCTGATCTTTATCAATTTCAATCTGA
CCCTGATCACTTGACCCTGATTACCTTGCCCACCACCAACACAGGATGGA
TGATCTGACTCTGGACCCCGCCGAGTACTTGGCAACCAAACGCCTCGGGT
CTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAGTCCCTCCTCCGAAG
CCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGATGCGTTTGCTGCGA
AACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCAGTTCTTGACGTCCA
AGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCCCGTTGGTTTTGTCA
AAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTAGTCCCGCCCTTTGG
CTTGAACATCTGCGCGAACGACGGACCACGGACAGCAAAAGATTGTCACC
ACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGCGGACGGAGGGTGAT
GACCACGTGCTTTATTGGTTAGATGTTGGAAAACCTCAGCGCATTTTAGA
GGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGGCGACGGTGCGGCCC
GAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTTCGACACTTGCCTCG
TTAACGGCACCATCGAATGCACAGATCTCTAGCTTGAACAGCAATGGCAG
GACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAAAGAGGACCGAGAAG
AAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGCGCCTGGCAGCCACC
CTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATGATTTTGGCGGTATG
GCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAATGGGATAATACTGC
TGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCTCCGGGGTGGGCCTA
TGGATATGGCAGATGTATTCTGATCGCCAGCGCCTAATGGTTCCGATGCC
CACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGGGAGGGATCCGCAGC
ATGTGGGCAGCGGCCATGACAGGCACGCACCAGACCGACCGAGAACGCGC
AATATCGAGGAAGCACAGTGCCTAATAGAAAGTGATGGCAACAATTACGG
TAGCGGCCGGGGTGCACCGTGA
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Coding sequence (CDS) from alignment at chr5:735092..737863-

>NO05G02810.1 ID=NO05G02810.1|Name=NO05G02810.1|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at chr5:735092..737863- (Nannochloropsis oceanica)
ATGATGCGGGTCTCGTTGGCCTTGCCCTTCCTCTTCTTTGTCGCGTGGAA
GGAAGGCTCCTTACCCAAGATTGACCGACGGAATGCCCGCTACATGCTTT
TACTAGGATTGCTAGGGGTTGCCTTGCCCCAGACTCTCGTGTTTGAGGCC
GACAAACTCGCAGGGCCCAACGCTGTTGCCATCATGACTCCAGCTGCCCC
AGTCAATGCCGCCATCTTCGCCTCGGCCCTTAAACTAGAACGACTCACCC
GCGTCAAGGTGGGGGGAGTTTCCCTGGCCGTGGCAGGTGCCTTGGTCATT
CTCTGGCCGGACAAAATAGCCTTGACCAATGGGCGTCCTGACGAAATACC
CGCGGGGATTTGCGTGATTGTGATACAGACCATGTGGTATGCCGCGCTTT
TGGTCGCATTAAAAATCAAGCTGCAAACACATCCAAACCCTTTCGGTCTA
TATGCTTATGCTTCTTTGACGGGCGCAATCGTTATCGCATTCGCGGGTGT
TGTGAGTGGAAGTATCTATTTTGATCCAAACATTGTGCCCCGGAGTGCGT
GGTTCGCTGTCCTCAATTGCGGCTTCGCCATTTCCTTCTTTGCGCATGCC
TGTCAGTCCTGGGCAGTCGCGCACACCTCAGCATCTTTCCCCTCTCTCTT
CAATTGCCTGTCCCCCTCTTTCACCGGCTTTCTCGCCCATGTTTTTCTTG
AGGAAAGGTTGGGCTTGCCGAGCGACATCATGGGTCTACCATTAAACGTG
TCAGGTCTCTTTGCCGTCGTTTTTTCCAAGATGAGGCTAGAGGGGCCCAT
GTCAGCAATCGCAACTGCCTCAGACAAGGATACAGTCAATGAGATTGGGA
TGGATGCAGTCCTTCCCGATACAGTAGCACCACCAGCTGGTAGACTGAGC
CTTAGTCGGATGGATGATCTGACTCTGGACCCCGCCGAGTACTTGGCAAC
CAAACGCCTCGGGTCTTTGAAGTGGCTTGTCGAGCCTGCATCGTCATCAG
TCCCTCCTCCGAAGCCCGTTTCCCTCTCCCCTGACTTGCCCGTCCATCGA
TGCGTTTGCTGCGAAACGCAGGCCGGCATTTTCGAACAGCACGTGGCTCA
GTTCTTGACGTCCAAGGAATTTGCAACTTTCTCAACCGTGATTCGGCGCC
CGTTGGTTTTGTCAAAAAGAGGGGAGGTTAGATGTCTGGACGGTCCGCTA
GTCCCGCCCTTTGGCTTGAACATCTGCGCGAACGACGGACCACGGACAGC
AAAAGATTGTCACCACCATCCGCGCGTAGGGTACGTCCAGCAACCATTGC
GGACGGAGGGTGATGACCACGTGCTTTATTGGTTAGATGTTGGAAAACCT
CAGCGCATTTTAGAGGCTGGTGGTGCGAGAGGAGAGGGCGCTCAACGTGG
CGACGGTGCGGCCCGAAGGATCTCGGCTATCAAAAGTGGAAGCGAATGTT
CGACACTTGCCTCGTTAACGGCACCATCGAATGCACAGATCTCTAGCTTG
AACAGCAATGGCAGGACAACCTCTTCCAAGCAGCGTCCAAGCGGCGGGAA
AGAGGACCGAGAAGAAGCGGAGCGAATGCGAGCACAAGTCAGGTTGCCGC
GCCTGGCAGCCACCCTCTTGGCAAGCCTTATGGGTGGCGGGGTCATGATG
ATTTTGGCGGTATGGCAACAACGTTTGAAGGGCGATCTGCCCCGCAATAA
TGGGATAATACTGCTGCTCGCTCTATATGCCCTTGTGGGGCTGGCGTGCT
CCGGGGTGGGCCTATGGATATGGCAGATGTATTCTGATCGCCAGCGCCTA
ATGGTTCCGATGCCCACTGCGAGCATGAATAGGAGGACAAGGGGCAAGGG
GAGGGATCCGCAGCATGTGGGCAGCGGCCATGACAGGCACGCACCAGACC
GACCGAGAACGCGCAATATCGAGGAAGCACAGTGCCTAATAGAAAGTGAT
GGCAACAATTACGGTAGCGGCCGGGGTGCACCGTGA
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Synonyms
Publications