NO05G02790.1, NO05G02790.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02790.1
Unique NameNO05G02790.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1284
Alignment locationchr5:730490..731773 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:730490..731773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02790.1 vs.
Match: WP_089130041.1 (DUF711 domain-containing protein [Tolypothrix sp. NIES-4075]; GAX44450.1 hypothetical protein NIES4075_54690 [Tolypothrix sp. NIES-4075])

HSP 1 Score: 229.2 bits (583), Expect = 2.400e-56
Identity = 160/431 (37.12%), Postives = 241/431 (55.92%), Query Frame = 0
Query:    1 MKLRALTIGIKIESLEELEGALLRAAVLGDELRKGIEAELEGGMEVQTVRIATNSFEEWIGCLDENEKGGNDYTMADSGSGTTSLATKATIIAQIINATGIEFCSLGPALTVNGIRAIPTLLK------ASSRISASAALRCWEERDGPELEALDEAKRDAVVEVMVALAQVGE-GLGNFRFAAGVDIEPNTPFFPVAFHDASKPTTVSIGTENSDLVVEAFENAGEEGIVGAAQRLQTAMNTRLLSLEALVRRLLLARPADAPVVVYGGIDTSINPSIGGPNHSLVRAYEMVVGEGRFGKSGTLAVSEALTRVVYNGLPGLKKVGFCGLMLPAMEDHLLAARASQHVPAYGISDLLAFSAVCGVGIDTVPVSLPEIQAAPTRVKALLLDMAALSRKKGRPLACRLFPVVGGKVGDMTTFDSPYLVNCAIF 425
            MK+R +T GI + SL+E++  + +A+    + +  IE   E G EVQT RIATNS+EE++  L ++E                 +  +  II ++     I F SLG A     I  IP ++K       SS+I  +      E   G   E   E+ +     V+  ++Q  + G GNF F A  + +   PFFP A+H+    T+ +IG E  DLV++AF +A   GI+ A ++L+  ++  L  +EA+ + +     ++   + Y GIDTS+ PS+G    S+  AYE ++ +G+FG  GTLA+S  LTRV+ +    +K  G+ GLMLP  ED  LAARA++    Y I++LLA+SAVCG G+DTVP+          ++ A+L+DMA L+ K  +PL+ RLFP+ G K G+MT FDSPYLV+C IF
Sbjct:    1 MKIRTITTGISLSSLKEID-KIKQASEFNQQAKLIIE---EQGYEVQTTRIATNSWEEYLHALSKSE-----------------IINQVKIIEEVCENLNINFFSLGYASKPETIALIPEIIKNTSIFYTSSKIGDTPKESLRERLSGINFENARESAK-----VIQRISQESKYGYGNFHFCAWANCQSGIPFFPTAYHEGE--TSFAIGLELCDLVMQAFSDAN--GILDAEEKLKLILDKELRKIEAIAQII-----SEKLAIEYKGIDTSLAPSLG-KEESIAFAYEKIM-DGKFGNQGTLAISGMLTRVLKS--VSVKICGYSGLMLPVCEDVGLAARANEQT--YNITNLLAYSAVCGCGLDTVPI---PGNITIEKITAILIDMATLAIKLDKPLSARLFPIPGKKAGEMTAFDSPYLVDCRIF 387          
The following BLAST results are available for this feature:
BLAST of NO05G02790.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
WP_089130041.12.400e-5637.12DUF711 domain-containing protein [Tolypothrix sp. ... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02790NO05G02790Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02790.1NO05G02790.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02790.1.cds1NO05G02790.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02790.1 ID=NO05G02790.1|Name=NO05G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp
ATGAAGCTCCGGGCGCTGACCATCGGCATCAAGATCGAGAGCCTCGAGGA
GCTTGAAGGGGCCTTATTGCGTGCTGCTGTCTTGGGGGACGAGCTACGCA
AAGGAATCGAGGCAGAGCTCGAGGGCGGGATGGAGGTACAAACCGTCCGC
ATAGCCACCAACTCCTTTGAGGAATGGATAGGATGCCTAGATGAGAACGA
GAAAGGGGGCAATGATTATACAATGGCGGACAGTGGCAGCGGCACCACTA
GTTTAGCAACGAAAGCTACTATAATTGCCCAAATCATCAACGCTACGGGA
ATCGAGTTTTGCAGCTTAGGACCAGCCCTTACTGTGAATGGCATCCGAGC
TATTCCCACGTTGCTAAAGGCATCAAGTCGTATAAGTGCTTCCGCGGCAT
TACGTTGTTGGGAGGAGAGAGATGGACCGGAGTTGGAGGCACTCGATGAG
GCGAAGCGAGACGCCGTCGTGGAAGTCATGGTCGCGCTGGCACAAGTAGG
AGAAGGGCTGGGCAATTTCCGCTTTGCTGCGGGGGTGGACATCGAGCCAA
ACACGCCCTTTTTCCCCGTAGCATTTCATGACGCCAGCAAACCCACTACG
GTCAGCATCGGGACCGAGAACAGCGACCTTGTCGTGGAAGCGTTCGAGAA
TGCGGGGGAGGAGGGCATAGTCGGGGCAGCTCAGCGTCTACAAACTGCTA
TGAATACGCGCTTACTGTCCTTGGAGGCGTTGGTGCGGCGATTGCTGCTA
GCAAGACCGGCTGATGCACCTGTGGTGGTTTATGGGGGAATCGACACGAG
TATAAACCCGTCGATAGGAGGTCCAAACCACAGCCTGGTGAGGGCTTATG
AGATGGTAGTGGGCGAAGGACGTTTTGGAAAGAGCGGGACGTTGGCCGTG
TCGGAAGCGTTGACCAGGGTGGTGTATAACGGGCTGCCAGGCTTGAAAAA
AGTAGGTTTTTGTGGTCTCATGCTTCCTGCGATGGAGGATCACTTGCTAG
CTGCGCGGGCTAGTCAACATGTCCCCGCCTATGGTATCTCGGATCTCCTG
GCGTTTTCTGCTGTGTGTGGGGTTGGTATCGATACGGTACCCGTCAGCTT
GCCAGAGATTCAGGCAGCTCCTACGAGAGTCAAGGCTTTGCTCTTGGACA
TGGCTGCTCTGTCTCGGAAAAAGGGGCGGCCGCTTGCTTGTCGGCTCTTC
CCCGTGGTCGGGGGGAAGGTGGGAGATATGACAACATTTGATTCACCTTA
TCTTGTTAATTGCGCTATTTTTGCCCTTCCTTAG
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protein sequence of NO05G02790.1

>NO05G02790.1-protein ID=NO05G02790.1-protein|Name=NO05G02790.1|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MKLRALTIGIKIESLEELEGALLRAAVLGDELRKGIEAELEGGMEVQTVR
IATNSFEEWIGCLDENEKGGNDYTMADSGSGTTSLATKATIIAQIINATG
IEFCSLGPALTVNGIRAIPTLLKASSRISASAALRCWEERDGPELEALDE
AKRDAVVEVMVALAQVGEGLGNFRFAAGVDIEPNTPFFPVAFHDASKPTT
VSIGTENSDLVVEAFENAGEEGIVGAAQRLQTAMNTRLLSLEALVRRLLL
ARPADAPVVVYGGIDTSINPSIGGPNHSLVRAYEMVVGEGRFGKSGTLAV
SEALTRVVYNGLPGLKKVGFCGLMLPAMEDHLLAARASQHVPAYGISDLL
AFSAVCGVGIDTVPVSLPEIQAAPTRVKALLLDMAALSRKKGRPLACRLF
PVVGGKVGDMTTFDSPYLVNCAIFALP*
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mRNA from alignment at chr5:730490..731773+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02790.1 ID=NO05G02790.1|Name=NO05G02790.1|organism=Nannochloropsis oceanica|type=mRNA|length=1284bp|location=Sequence derived from alignment at chr5:730490..731773+ (Nannochloropsis oceanica)
ATGAAGCTCCGGGCGCTGACCATCGGCATCAAGATCGAGAGCCTCGAGGA GCTTGAAGGGGCCTTATTGCGTGCTGCTGTCTTGGGGGACGAGCTACGCA AAGGAATCGAGGCAGAGCTCGAGGGCGGGATGGAGGTACAAACCGTCCGC ATAGCCACCAACTCCTTTGAGGAATGGATAGGATGCCTAGATGAGAACGA GAAAGGGGGCAATGATTATACAATGGCGGACAGTGGCAGCGGCACCACTA GTTTAGCAACGAAAGCTACTATAATTGCCCAAATCATCAACGCTACGGGA ATCGAGTTTTGCAGCTTAGGACCAGCCCTTACTGTGAATGGCATCCGAGC TATTCCCACGTTGCTAAAGGCATCAAGTCGTATAAGTGCTTCCGCGGCAT TACGTTGTTGGGAGGAGAGAGATGGACCGGAGTTGGAGGCACTCGATGAG GCGAAGCGAGACGCCGTCGTGGAAGTCATGGTCGCGCTGGCACAAGTAGG AGAAGGGCTGGGCAATTTCCGCTTTGCTGCGGGGGTGGACATCGAGCCAA ACACGCCCTTTTTCCCCGTAGCATTTCATGACGCCAGCAAACCCACTACG GTCAGCATCGGGACCGAGAACAGCGACCTTGTCGTGGAAGCGTTCGAGAA TGCGGGGGAGGAGGGCATAGTCGGGGCAGCTCAGCGTCTACAAACTGCTA TGAATACGCGCTTACTGTCCTTGGAGGCGTTGGTGCGGCGATTGCTGCTA GCAAGACCGGCTGATGCACCTGTGGTGGTTTATGGGGGAATCGACACGAG TATAAACCCGTCGATAGGAGGTCCAAACCACAGCCTGGTGAGGGCTTATG AGATGGTAGTGGGCGAAGGACGTTTTGGAAAGAGCGGGACGTTGGCCGTG TCGGAAGCGTTGACCAGGGTGGTGTATAACGGGCTGCCAGGCTTGAAAAA AGTAGGTTTTTGTGGTCTCATGCTTCCTGCGATGGAGGATCACTTGCTAG CTGCGCGGGCTAGTCAACATGTCCCCGCCTATGGTATCTCGGATCTCCTG GCGTTTTCTGCTGTGTGTGGGGTTGGTATCGATACGGTACCCGTCAGCTT GCCAGAGATTCAGGCAGCTCCTACGAGAGTCAAGGCTTTGCTCTTGGACA TGGCTGCTCTGTCTCGGAAAAAGGGGCGGCCGCTTGCTTGTCGGCTCTTC CCCGTGGTCGGGGGGAAGGTGGGAGATATGACAACATTTGATTCACCTTA TCTTGTTAATTGCGCTATTTTTGCCCTTCCTTAG
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Coding sequence (CDS) from alignment at chr5:730490..731773+

>NO05G02790.1 ID=NO05G02790.1|Name=NO05G02790.1|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at chr5:730490..731773+ (Nannochloropsis oceanica)
ATGAAGCTCCGGGCGCTGACCATCGGCATCAAGATCGAGAGCCTCGAGGA
GCTTGAAGGGGCCTTATTGCGTGCTGCTGTCTTGGGGGACGAGCTACGCA
AAGGAATCGAGGCAGAGCTCGAGGGCGGGATGGAGGTACAAACCGTCCGC
ATAGCCACCAACTCCTTTGAGGAATGGATAGGATGCCTAGATGAGAACGA
GAAAGGGGGCAATGATTATACAATGGCGGACAGTGGCAGCGGCACCACTA
GTTTAGCAACGAAAGCTACTATAATTGCCCAAATCATCAACGCTACGGGA
ATCGAGTTTTGCAGCTTAGGACCAGCCCTTACTGTGAATGGCATCCGAGC
TATTCCCACGTTGCTAAAGGCATCAAGTCGTATAAGTGCTTCCGCGGCAT
TACGTTGTTGGGAGGAGAGAGATGGACCGGAGTTGGAGGCACTCGATGAG
GCGAAGCGAGACGCCGTCGTGGAAGTCATGGTCGCGCTGGCACAAGTAGG
AGAAGGGCTGGGCAATTTCCGCTTTGCTGCGGGGGTGGACATCGAGCCAA
ACACGCCCTTTTTCCCCGTAGCATTTCATGACGCCAGCAAACCCACTACG
GTCAGCATCGGGACCGAGAACAGCGACCTTGTCGTGGAAGCGTTCGAGAA
TGCGGGGGAGGAGGGCATAGTCGGGGCAGCTCAGCGTCTACAAACTGCTA
TGAATACGCGCTTACTGTCCTTGGAGGCGTTGGTGCGGCGATTGCTGCTA
GCAAGACCGGCTGATGCACCTGTGGTGGTTTATGGGGGAATCGACACGAG
TATAAACCCGTCGATAGGAGGTCCAAACCACAGCCTGGTGAGGGCTTATG
AGATGGTAGTGGGCGAAGGACGTTTTGGAAAGAGCGGGACGTTGGCCGTG
TCGGAAGCGTTGACCAGGGTGGTGTATAACGGGCTGCCAGGCTTGAAAAA
AGTAGGTTTTTGTGGTCTCATGCTTCCTGCGATGGAGGATCACTTGCTAG
CTGCGCGGGCTAGTCAACATGTCCCCGCCTATGGTATCTCGGATCTCCTG
GCGTTTTCTGCTGTGTGTGGGGTTGGTATCGATACGGTACCCGTCAGCTT
GCCAGAGATTCAGGCAGCTCCTACGAGAGTCAAGGCTTTGCTCTTGGACA
TGGCTGCTCTGTCTCGGAAAAAGGGGCGGCCGCTTGCTTGTCGGCTCTTC
CCCGTGGTCGGGGGGAAGGTGGGAGATATGACAACATTTGATTCACCTTA
TCTTGTTAATTGCGCTATTTTTGCCCTTCCTTAG
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Synonyms
Publications