NO05G02710.1, NO05G02710.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02710.1
Unique NameNO05G02710.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1522
Alignment locationchr5:716470..718111 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:716470..718111 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
BLAST of NO05G02710.1 vs.
Match: EWM28136.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana])

HSP 1 Score: 453.8 bits (1166), Expect = 6.400e-124
Identity = 245/422 (58.06%), Postives = 304/422 (72.04%), Query Frame = 0
Query:   35 KQEGNREEEQQQLEESDADQHERP-----QKKAAKMKAAEVVLQTKRCALARNPALGHPCSFKVLSWNVNGLNGILNGKHATLNGNKTTNVLQELVALEGDVDVLFLQETKLQESKCSGFSKILPGYVAYWSCSKVKKGYSGVAAFVKEVYVRGNGDGGGDAKMGPI-GKQRTLSSFFRAGFKKKGTATEEGAKGA----ETSPCDAATADTASS----------TSTSSFEVLNVKYGYCGDKDEDEEGRVVTLEFACFWLVGVYVANSGMRLERLQHRLKTFNPRFQEFLSGLNDTKPVLVIGDFNVAPLDIDCYNAGAKHLVKVPGLTPEEREAHATWLGTGWKDTFRAFHPEAKGQYTYWNVKTNARPDNKGLRLDFAIIASQDLEGGRGVKVHDSFILHEATVGYSDHAPIGVVLEV 437
            ++EG R+     +E  + D+   P     Q  ++  +  E+VLQT+R  LARN       SFKVLSWNVNGLNGILNGK A +NGNK +NVLQ+LV  EG+VDV+FLQETKLQ++KC+ F  +LPGYVA+WSCSK KKGY+GVAAFV E YV+       DA  G   GKQ TL+SFF    K K T   +GA+G     +T+ C +A+  ++ S          +S  + +VL+V+ G  G+ DEDEEGRV+TLEF  FW+VGVYV NSGM+LERL++RLK +NP FQ +L+ LN  KP LV+GD NVAP   D YNAGAKHL KVPGLTPEEREAHA WL TGWKDTFRA HP+A+G YTYWNVKT AR +NKGLRLD A+I + D++GGRGV+V DSFILHEAT+G+SDHAPIGVVL++
Sbjct:   33 EEEGTRQLLNGGVEGKEGDKTPPPDDCERQLLSSSKQVTELVLQTERDLLARNSLPEK--SFKVLSWNVNGLNGILNGKAAQINGNKGSNVLQQLVQEEGNVDVIFLQETKLQDAKCAAFEDVLPGYVAHWSCSKTKKGYAGVAAFVHEKYVKRCISSYSDANKGSSRGKQATLASFFPT--KGKETEPTKGAEGRIAAMKTAACKSASMASSCSIKDKEIEDGDSSVEALQVLSVRRGCDGEDDEDEEGRVLTLEFGSFWVVGVYVTNSGMKLERLEYRLKQWNPSFQAYLARLNAVKPALVVGDMNVAPEASDVYNAGAKHLAKVPGLTPEEREAHAAWLRTGWKDTFRALHPDARGAYTYWNVKTRARAENKGLRLDLAVIGAADMDGGRGVRVRDSFILHEATIGFSDHAPIGVVLDL 450          
The following BLAST results are available for this feature:
BLAST of NO05G02710.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28136.16.400e-12458.06Endonuclease/exonuclease/phosphatase [Nannochlorop... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02710NO05G02710Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02710.1NO05G02710.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02710.1.cds1NO05G02710.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02710.1.cds2NO05G02710.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp
GCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACCGACACAACCG
TAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGA
CAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGT
GTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCG
AGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAG
ATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCG
GAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATG
TGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGC
AACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGT
GGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTG
GCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAA
GTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGT
GCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGA
AGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGA
ACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGC
TGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCT
TGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGT
CGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGT
AGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTT
TCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCT
GTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTA
CAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGG
AGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTC
AGGGCCTTTCATCCGGAAGCCAAGGGGCAGTACACCTACTGGAACGTCAA
GACAAATGCAAGGCCTGACAACAAGGGACTGCGACTAGACTTTGCCATAA
TTGCTTCGCAAGACCTGGAAGGAGGAAGAGGAGTCAAGGTGCATGACTCG
TTCATTCTGCACGAAGCGACGGTGGGCTATTCGGATCATGCGCCCATTGG
CGTTGTCCTGGAGGTGGAGGGGGGAGGGAGGGAAGAGATGTCTTCGTGAC
GAAGAGATGAACAAATTGTTCAATAAACGTGCCAAAATGGTCATATCTGG
CACGATAAACGAACAAAGGTCACGAAGAGTAACAATCAACCGCACGAATG
AATGTCACTCTTAACATTGCAG
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protein sequence of NO05G02710.1

>NO05G02710.1-protein ID=NO05G02710.1-protein|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MPKRKQEEERETNGQEQEQEGNELSEEKEGVLMKKQEGNREEEQQQLEES
DADQHERPQKKAAKMKAAEVVLQTKRCALARNPALGHPCSFKVLSWNVNG
LNGILNGKHATLNGNKTTNVLQELVALEGDVDVLFLQETKLQESKCSGFS
KILPGYVAYWSCSKVKKGYSGVAAFVKEVYVRGNGDGGGDAKMGPIGKQR
TLSSFFRAGFKKKGTATEEGAKGAETSPCDAATADTASSTSTSSFEVLNV
KYGYCGDKDEDEEGRVVTLEFACFWLVGVYVANSGMRLERLQHRLKTFNP
RFQEFLSGLNDTKPVLVIGDFNVAPLDIDCYNAGAKHLVKVPGLTPEERE
AHATWLGTGWKDTFRAFHPEAKGQYTYWNVKTNARPDNKGLRLDFAIIAS
QDLEGGRGVKVHDSFILHEATVGYSDHAPIGVVLEVEGGGREEMSS*
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mRNA from alignment at chr5:716470..718111+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at chr5:716470..718111+ (Nannochloropsis oceanica)
GCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACCGACACAACCG TAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGA CAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGT GTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCG AGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAG ATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCG GAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATG TGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGC AACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGT GGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTG GCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAA GTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGT GCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGA AGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGA ACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGC TGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCT TGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGT CGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGT AGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTT TCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCT GTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTA CAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGG AGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTC AGGTTCGTTTTCAGATTTCTACGAAAAAAAAAAATCTTGACTTCCTTTTC TCTTCGCCTCACCTATCAATTTTACATTCTCGTCTTCATGTATCTCATCA TTTACATCCGCCGTTTTTTCAGGGCCTTTCATCCGGAAGCCAAGGGGCAG TACACCTACTGGAACGTCAAGACAAATGCAAGGCCTGACAACAAGGGACT GCGACTAGACTTTGCCATAATTGCTTCGCAAGACCTGGAAGGAGGAAGAG GAGTCAAGGTGCATGACTCGTTCATTCTGCACGAAGCGACGGTGGGCTAT TCGGATCATGCGCCCATTGGCGTTGTCCTGGAGGTGGAGGGGGGAGGGAG GGAAGAGATGTCTTCGTGACGAAGAGATGAACAAATTGTTCAATAAACGT GCCAAAATGGTCATATCTGGCACGATAAACGAACAAAGGTCACGAAGAGT AACAATCAACCGCACGAATGAATGTCACTCTTAACATTGCAG
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Coding sequence (CDS) from alignment at chr5:716470..718111+

>NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr5:716470..718111+ (Nannochloropsis oceanica)
ATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGACAGGAGCA
GGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGTGTTGATGA
AGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCGAGGAGAGT
GACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAGATGAAGGC
TGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCGGAATCCAG
CTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATGTGAACGGC
CTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGCAACAAGAC
TACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGTGGATGTGT
TGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTGGCTTTAGC
AAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAAGTCAAGAA
GGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGTGCGCGGAA
ATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGAAGCAACGG
ACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGAACCGCGAC
GGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGCTGCTACCG
CTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCTTGAATGTG
AAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGTCGTGTGGT
GACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGTAGCGAATA
GTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTTTCAATCCA
CGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCTGTATTAGT
CATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTACAATGCAG
GGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGGAGCGGGAG
GCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTCAGGGCCTT
TCATCCGGAAGCCAAGGGGCAGTACACCTACTGGAACGTCAAGACAAATG
CAAGGCCTGACAACAAGGGACTGCGACTAGACTTTGCCATAATTGCTTCG
CAAGACCTGGAAGGAGGAAGAGGAGTCAAGGTGCATGACTCGTTCATTCT
GCACGAAGCGACGGTGGGCTATTCGGATCATGCGCCCATTGGCGTTGTCC
TGGAGGTGGAGGGGGGAGGGAGGGAAGAGATGTCTTCGTGA
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Synonyms
Publications