|
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:716470..718111 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02710.1 vs.
Match: EWM28136.1 (Endonuclease/exonuclease/phosphatase [Nannochloropsis gaditana]) HSP 1 Score: 453.8 bits (1166), Expect = 6.400e-124 Identity = 245/422 (58.06%), Postives = 304/422 (72.04%), Query Frame = 0
Query: 35 KQEGNREEEQQQLEESDADQHERP-----QKKAAKMKAAEVVLQTKRCALARNPALGHPCSFKVLSWNVNGLNGILNGKHATLNGNKTTNVLQELVALEGDVDVLFLQETKLQESKCSGFSKILPGYVAYWSCSKVKKGYSGVAAFVKEVYVRGNGDGGGDAKMGPI-GKQRTLSSFFRAGFKKKGTATEEGAKGA----ETSPCDAATADTASS----------TSTSSFEVLNVKYGYCGDKDEDEEGRVVTLEFACFWLVGVYVANSGMRLERLQHRLKTFNPRFQEFLSGLNDTKPVLVIGDFNVAPLDIDCYNAGAKHLVKVPGLTPEEREAHATWLGTGWKDTFRAFHPEAKGQYTYWNVKTNARPDNKGLRLDFAIIASQDLEGGRGVKVHDSFILHEATVGYSDHAPIGVVLEV 437
++EG R+ +E + D+ P Q ++ + E+VLQT+R LARN SFKVLSWNVNGLNGILNGK A +NGNK +NVLQ+LV EG+VDV+FLQETKLQ++KC+ F +LPGYVA+WSCSK KKGY+GVAAFV E YV+ DA G GKQ TL+SFF K K T +GA+G +T+ C +A+ ++ S +S + +VL+V+ G G+ DEDEEGRV+TLEF FW+VGVYV NSGM+LERL++RLK +NP FQ +L+ LN KP LV+GD NVAP D YNAGAKHL KVPGLTPEEREAHA WL TGWKDTFRA HP+A+G YTYWNVKT AR +NKGLRLD A+I + D++GGRGV+V DSFILHEAT+G+SDHAPIGVVL++
Sbjct: 33 EEEGTRQLLNGGVEGKEGDKTPPPDDCERQLLSSSKQVTELVLQTERDLLARNSLPEK--SFKVLSWNVNGLNGILNGKAAQINGNKGSNVLQQLVQEEGNVDVIFLQETKLQDAKCAAFEDVLPGYVAHWSCSKTKKGYAGVAAFVHEKYVKRCISSYSDANKGSSRGKQATLASFFPT--KGKETEPTKGAEGRIAAMKTAACKSASMASSCSIKDKEIEDGDSSVEALQVLSVRRGCDGEDDEDEEGRVLTLEFGSFWVVGVYVTNSGMKLERLEYRLKQWNPSFQAYLARLNAVKPALVVGDMNVAPEASDVYNAGAKHLAKVPGLTPEEREAHAAWLRTGWKDTFRALHPDARGAYTYWNVKTRARAENKGLRLDLAVIGAADMDGGRGVRVRDSFILHEATIGFSDHAPIGVVLDL 450
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1522bp GCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACCGACACAACCG TAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGA CAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGT GTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCG AGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAG ATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCG GAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATG TGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGC AACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGT GGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTG GCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAA GTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGT GCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGA AGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGA ACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGC TGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCT TGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGT CGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGT AGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTT TCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCT GTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTA CAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGG AGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTC AGGGCCTTTCATCCGGAAGCCAAGGGGCAGTACACCTACTGGAACGTCAA GACAAATGCAAGGCCTGACAACAAGGGACTGCGACTAGACTTTGCCATAA TTGCTTCGCAAGACCTGGAAGGAGGAAGAGGAGTCAAGGTGCATGACTCG TTCATTCTGCACGAAGCGACGGTGGGCTATTCGGATCATGCGCCCATTGG CGTTGTCCTGGAGGTGGAGGGGGGAGGGAGGGAAGAGATGTCTTCGTGAC GAAGAGATGAACAAATTGTTCAATAAACGTGCCAAAATGGTCATATCTGG CACGATAAACGAACAAAGGTCACGAAGAGTAACAATCAACCGCACGAATG AATGTCACTCTTAACATTGCAG back to topprotein sequence of NO05G02710.1 >NO05G02710.1-protein ID=NO05G02710.1-protein|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp MPKRKQEEERETNGQEQEQEGNELSEEKEGVLMKKQEGNREEEQQQLEES DADQHERPQKKAAKMKAAEVVLQTKRCALARNPALGHPCSFKVLSWNVNG LNGILNGKHATLNGNKTTNVLQELVALEGDVDVLFLQETKLQESKCSGFS KILPGYVAYWSCSKVKKGYSGVAAFVKEVYVRGNGDGGGDAKMGPIGKQR TLSSFFRAGFKKKGTATEEGAKGAETSPCDAATADTASSTSTSSFEVLNV KYGYCGDKDEDEEGRVVTLEFACFWLVGVYVANSGMRLERLQHRLKTFNP RFQEFLSGLNDTKPVLVIGDFNVAPLDIDCYNAGAKHLVKVPGLTPEERE AHATWLGTGWKDTFRAFHPEAKGQYTYWNVKTNARPDNKGLRLDFAIIAS QDLEGGRGVKVHDSFILHEATVGYSDHAPIGVVLEVEGGGREEMSS* back to topmRNA from alignment at chr5:716470..718111+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=mRNA|length=1642bp|location=Sequence derived from alignment at chr5:716470..718111+ (Nannochloropsis oceanica) GCTGCATTCGATTTCTTTCTCACAATACGAAAGCATAACCGACACAACCG
TAGAAGTCATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGA
CAGGAGCAGGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGT
GTTGATGAAGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCG
AGGAGAGTGACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAG
ATGAAGGCTGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCG
GAATCCAGCTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATG
TGAACGGCCTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGC
AACAAGACTACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGT
GGATGTGTTGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTG
GCTTTAGCAAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAA
GTCAAGAAGGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGT
GCGCGGAAATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGA
AGCAACGGACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGA
ACCGCGACGGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGC
TGCTACCGCTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCT
TGAATGTGAAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGT
CGTGTGGTGACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGT
AGCGAATAGTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTT
TCAATCCACGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCT
GTATTAGTCATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTA
CAATGCAGGGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGG
AGCGGGAGGCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTC
AGGTTCGTTTTCAGATTTCTACGAAAAAAAAAAATCTTGACTTCCTTTTC
TCTTCGCCTCACCTATCAATTTTACATTCTCGTCTTCATGTATCTCATCA
TTTACATCCGCCGTTTTTTCAGGGCCTTTCATCCGGAAGCCAAGGGGCAG
TACACCTACTGGAACGTCAAGACAAATGCAAGGCCTGACAACAAGGGACT
GCGACTAGACTTTGCCATAATTGCTTCGCAAGACCTGGAAGGAGGAAGAG
GAGTCAAGGTGCATGACTCGTTCATTCTGCACGAAGCGACGGTGGGCTAT
TCGGATCATGCGCCCATTGGCGTTGTCCTGGAGGTGGAGGGGGGAGGGAG
GGAAGAGATGTCTTCGTGACGAAGAGATGAACAAATTGTTCAATAAACGT
GCCAAAATGGTCATATCTGGCACGATAAACGAACAAAGGTCACGAAGAGT
AACAATCAACCGCACGAATGAATGTCACTCTTAACATTGCAG back to topCoding sequence (CDS) from alignment at chr5:716470..718111+ >NO05G02710.1 ID=NO05G02710.1|Name=NO05G02710.1|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at chr5:716470..718111+ (Nannochloropsis oceanica) ATGCCAAAGCGCAAGCAGGAGGAGGAAAGGGAGACGAATGGACAGGAGCA GGAGCAGGAGGGCAACGAGCTGTCTGAAGAGAAGGAAGGGGTGTTGATGA AGAAGCAGGAGGGGAATCGGGAGGAGGAGCAGCAGCAGCTCGAGGAGAGT GACGCTGACCAGCACGAGCGGCCGCAGAAGAAGGCGGCGAAGATGAAGGC TGCAGAGGTCGTGTTACAGACGAAACGTTGTGCCTTGGCCCGGAATCCAG CTCTCGGCCACCCGTGCTCTTTTAAGGTTCTTTCTTGGAATGTGAACGGC CTTAATGGCATCCTGAATGGAAAGCATGCCACGCTCAACGGCAACAAGAC TACCAACGTGTTGCAAGAACTGGTAGCCCTTGAAGGAGATGTGGATGTGT TGTTCCTCCAAGAGACTAAGCTGCAAGAGAGCAAATGTTCTGGCTTTAGC AAAATTCTTCCCGGATACGTGGCATATTGGTCCTGTTCAAAAGTCAAGAA GGGGTATTCGGGGGTGGCTGCGTTTGTAAAGGAGGTGTATGTGCGCGGAA ATGGTGATGGCGGTGGGGATGCAAAAATGGGACCGATAGGGAAGCAACGG ACACTGTCAAGCTTTTTTCGGGCCGGCTTCAAGAAGAAGGGAACCGCGAC GGAAGAGGGGGCCAAGGGCGCTGAGACATCCCCGTGTGATGCTGCTACCG CTGATACTGCTTCTTCCACTTCGACTTCCTCGTTCGAAGTCTTGAATGTG AAGTACGGCTATTGCGGAGACAAAGACGAGGACGAGGAAGGTCGTGTGGT GACCCTGGAATTTGCATGCTTTTGGTTGGTGGGGGTGTACGTAGCGAATA GTGGGATGAGGCTTGAGCGGCTGCAGCATCGCCTCAAGACTTTCAATCCA CGTTTTCAAGAGTTTCTTTCCGGCCTGAATGACACTAAGCCTGTATTAGT CATTGGAGATTTTAATGTGGCCCCGTTGGATATAGATTGCTACAATGCAG GGGCTAAGCATTTGGTGAAGGTGCCAGGGTTGACACCGGAGGAGCGGGAG GCGCATGCTACGTGGTTAGGTACCGGATGGAAGGATACATTCAGGGCCTT TCATCCGGAAGCCAAGGGGCAGTACACCTACTGGAACGTCAAGACAAATG CAAGGCCTGACAACAAGGGACTGCGACTAGACTTTGCCATAATTGCTTCG CAAGACCTGGAAGGAGGAAGAGGAGTCAAGGTGCATGACTCGTTCATTCT GCACGAAGCGACGGTGGGCTATTCGGATCATGCGCCCATTGGCGTTGTCC TGGAGGTGGAGGGGGGAGGGAGGGAAGAGATGTCTTCGTGA back to top
|