NO05G02650.1, NO05G02650.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02650.1
Unique Name	NO05G02650.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	1860
Alignment location	chr5:702614..704672 -

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:702614..704672 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G02650.1 vs.
Match: EWM28108.1 (sec1-like family protein [Nannochloropsis gaditana])

HSP 1 Score: 978.8 bits (2529), Expect = 7.900e-282
Identity = 487/618 (78.80%), Postives = 551/618 (89.16%), Query Frame = 0

Query:    1 MSSSGKKVTEESPLKHFRDVVQRRLMRDVIEAAAGLSRGWMVMVIDDAALRVVSALVGMYDVMEHRVTLIELLSKKRQPLPEMEVIYLVTPTLETINLILKDFSDPKRPRYGAVHLFFLSKVNDTLMQRLGTAPNLSQRVQTFKEVNMNFLATEASAFHLDMPRCLPGLFSSRPDDTILDEVVDKLVSLCVTLNEYPHVRFNQNSVLGARIATLVQDGLNDFVARQEDWWYHGQTGHMDRERATFLILDRAEDPLTPLIHEHTYQAIVQDLLQVEDDMITFQSEGKGGRHETKALLNESDALWAEFRHQHIAKVMEQIGERTRDYIQANAGVEMTRKLGTNAKMSPHELALIVKQLPEYREMTGKLWMHYSITTDVMARFQHFGVLDLSELEQTLATGVDGDGRSVKEEKMLQSLETMLMGLESAGMTLANKMRLIAIFIIAQGGITEEARRTLVAAAGLTTEDQNALIHLEALGVKVQKSKSGSSSMWGGQAKKNKRRAYQDSEYAASRYVCALKDLIDQIVQGELSTEVYPSVLPMPSLVGKPVARSLRKPEKGRLGKQPGSYTGARSLIFVAGGVSFSELRAAYEVMERQKKEVIIGGTSYLTPNTFVDLLRAIK 619
            MSS  ++  E SP K+FR+VVQRRLM+DVIEAAAGLSRGWMVMVIDDAALRVVSALVGMYDVMEHRVTLIELLSK RQPLPEM+VIYLVTPT +++NLILKDF++PK+PRYGAVHLFFLSKVND LMQRL   PN  QRV+TFKE+NMNFLATEA +FHLDMP  LPGLF +RPD  + +EVV+KLV+LCV LNEYPHVRFNQ SVLGAR+A+LVQDGLNDFVA QEDWWYHGQTGH DRERAT LILDRAEDPLTPL+HEHT+Q +V + L VEDDM+TFQSEGKGG HETKALLNESDALW EFRHQHIAKVMEQIGERT++YI ANAG E+T+KLGT+AKMS  EL LI+KQLPEYREMTGKLWM+YS+TTD+MARFQ  G+L++SELEQTLATGVD DGRSVKE+KMLQSLE+MLMGLES G++L NKMRLIAIFIIAQ GITE  RR LV AAGLT EDQ+ALIHLEALGV VQK+K+ SSS+WG ++ K KRR  Q SEY+ASRYVC LKDLI+Q VQGELSTE YPS+LPMPS  GKP+ARSLRK EKGRLGKQP +++G RSL+FVAGGV++SELRAAYEVME+ KKEV+IGGTSYLTPN ++ LLRA+K
Sbjct:    1 MSSLSRRGAENSPPKNFREVVQRRLMQDVIEAAAGLSRGWMVMVIDDAALRVVSALVGMYDVMEHRVTLIELLSKDRQPLPEMDVIYLVTPTPDSVNLILKDFANPKKPRYGAVHLFFLSKVNDMLMQRLAAVPNFLQRVRTFKEINMNFLATEAFSFHLDMPESLPGLFKARPDAAVQEEVVNKLVALCVALNEYPHVRFNQKSVLGARLASLVQDGLNDFVAAQEDWWYHGQTGHTDRERATLLILDRAEDPLTPLLHEHTFQPMVHEFLPVEDDMVTFQSEGKGGGHETKALLNESDALWVEFRHQHIAKVMEQIGERTKEYIHANAGAELTQKLGTDAKMSAQELGLILKQLPEYREMTGKLWMYYSLTTDLMARFQREGILEISELEQTLATGVDSDGRSVKEDKMLQSLESMLMGLESTGLSLENKMRLIAIFIIAQEGITEVDRRQLVGAAGLTREDQDALIHLEALGVNVQKTKNHSSSLWGSKSTKAKRRTDQASEYSASRYVCPLKDLIEQTVQGELSTEAYPSILPMPSQEGKPIARSLRKHEKGRLGKQPATFSGGRSLVFVAGGVTYSELRAAYEVMEQHKKEVVIGGTSYLTPNAYIKLLRAVK 618

The following BLAST results are available for this feature:

BLAST of NO05G02650.1 vs.

BLAST of NO05G02650.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28108.1	7.900e-282	78.80	sec1-like family protein [Nannochloropsis gaditana...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02650	NO05G02650	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02650.1	NO05G02650.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02650.1.cds1	NO05G02650.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02650.1.cds2	NO05G02650.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:702614..704672-
coding sequence from alignment at chr5:702614..704672-

mRNA sequence

>NO05G02650.1 ID=NO05G02650.1|Name=NO05G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp
ATGTCATCCTCAGGCAAAAAGGTTACGGAGGAGTCTCCGCTCAAGCACTT
TCGCGACGTGGTTCAACGCCGGCTGATGCGGGACGTGATCGAGGCAGCTG
CAGGCTTGAGCCGTGGGTGGATGGTCATGGTAATTGACGACGCGGCCTTG
CGCGTGGTCTCGGCCTTAGTGGGCATGTACGACGTGATGGAGCACCGTGT
CACGCTGATTGAACTGCTGTCAAAGAAGCGGCAGCCATTGCCCGAGATGG
AGGTCATTTATCTGGTGACCCCGACCCTAGAGACCATCAACCTGATTCTC
AAGGACTTTTCCGACCCCAAGAGGCCGCGTTACGGTGCGGTGCACCTATT
CTTTTTATCGAAGGTGAACGACACACTTATGCAGCGGTTGGGGACCGCGC
CGAATCTTTCGCAGCGCGTCCAGACGTTCAAAGAAGTCAACATGAATTTC
CTTGCTACCGAGGCGTCAGCCTTCCACCTTGACATGCCCCGCTGCTTGCC
CGGCCTTTTTAGCAGTCGCCCCGACGACACTATCTTGGACGAGGTGGTCG
ATAAGCTGGTTTCGCTCTGTGTAACCTTGAATGAGTACCCGCACGTCCGC
TTCAACCAAAACAGCGTTTTGGGTGCCCGCATTGCCACGCTAGTCCAGGA
CGGGCTCAATGACTTCGTCGCTCGTCAAGAAGACTGGTGGTACCATGGGC
AGACCGGACACATGGATAGAGAGCGGGCCACTTTTCTCATTTTGGATCGC
GCGGAGGACCCATTGACGCCGTTGATTCATGAGCATACGTATCAGGCGAT
AGTCCAAGATTTACTGCAAGTAGAGGATGACATGATTACTTTTCAGTCGG
AGGGGAAAGGCGGGCGGCACGAAACCAAGGCCTTGCTGAATGAGTCGGAT
GCGTTATGGGCTGAGTTTCGGCACCAGCATATTGCGAAGGTAATGGAGCA
AATTGGGGAGCGCACACGGGATTACATTCAGGCGAATGCCGGTGTGGAGA
TGACGAGGAAGTTGGGGACGAATGCCAAAATGTCACCCCATGAACTGGCT
TTGATTGTGAAGCAGCTTCCAGAATATCGGGAGATGACGGGAAAATTGTG
GATGCACTATTCGATTACCACGGATGTGATGGCGAGGTTTCAGCATTTTG
GGGTGTTGGATTTGTCGGAGCTGGAGCAGACGCTGGCGACGGGGGTGGAT
GGGGATGGGAGAAGCGTTAAGGAGGAGAAGATGTTGCAGAGCTTGGAGAC
GATGCTGATGGGCTTGGAGAGCGCGGGCATGACACTGGCAAACAAGATGC
GCCTCATCGCCATCTTCATCATTGCCCAAGGGGGCATCACCGAGGAGGCC
CGTCGCACACTCGTGGCGGCAGCAGGCTTGACTACCGAAGACCAAAACGC
CCTGATCCACCTCGAGGCTTTGGGTGTGAAAGTGCAAAAGTCCAAGAGCG
GGTCTTCGTCGATGTGGGGTGGCCAGGCTAAGAAGAACAAGCGCCGAGCC
TATCAAGACTCCGAGTACGCCGCCAGCCGCTATGTATGCGCCCTCAAGGA
CCTCATCGATCAAATTGTTCAAGGTGAACTCTCCACTGAAGTCTACCCCT
CTGTACTCCCTATGCCTTCGCTTGTAGGAAAACCCGTGGCCCGTTCCTTG
CGCAAGCCCGAGAAGGGTCGTTTGGGGAAGCAACCTGGGAGCTACACGGG
CGCCCGATCGTTGATCTTTGTAGCGGGCGGTGTGTCATTTTCTGAGCTCC
GAGCCGCCTATGAGGTAATGGAGCGACAAAAAAAGGAAGTGATCATTGGT
GGCACCTCCTACCTCACGCCCAACACGTTTGTGGACTTGCTGCGGGCTAT
TAAGATCTAA

protein sequence of NO05G02650.1

>NO05G02650.1-protein ID=NO05G02650.1-protein|Name=NO05G02650.1|organism=Nannochloropsis oceanica|type=polypeptide|length=620bp
MSSSGKKVTEESPLKHFRDVVQRRLMRDVIEAAAGLSRGWMVMVIDDAAL
RVVSALVGMYDVMEHRVTLIELLSKKRQPLPEMEVIYLVTPTLETINLIL
KDFSDPKRPRYGAVHLFFLSKVNDTLMQRLGTAPNLSQRVQTFKEVNMNF
LATEASAFHLDMPRCLPGLFSSRPDDTILDEVVDKLVSLCVTLNEYPHVR
FNQNSVLGARIATLVQDGLNDFVARQEDWWYHGQTGHMDRERATFLILDR
AEDPLTPLIHEHTYQAIVQDLLQVEDDMITFQSEGKGGRHETKALLNESD
ALWAEFRHQHIAKVMEQIGERTRDYIQANAGVEMTRKLGTNAKMSPHELA
LIVKQLPEYREMTGKLWMHYSITTDVMARFQHFGVLDLSELEQTLATGVD
GDGRSVKEEKMLQSLETMLMGLESAGMTLANKMRLIAIFIIAQGGITEEA
RRTLVAAAGLTTEDQNALIHLEALGVKVQKSKSGSSSMWGGQAKKNKRRA
YQDSEYAASRYVCALKDLIDQIVQGELSTEVYPSVLPMPSLVGKPVARSL
RKPEKGRLGKQPGSYTGARSLIFVAGGVSFSELRAAYEVMERQKKEVIIG
GTSYLTPNTFVDLLRAIKI*

mRNA from alignment at chr5:702614..704672-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02650.1 ID=NO05G02650.1|Name=NO05G02650.1|organism=Nannochloropsis oceanica|type=mRNA|length=2059bp|location=Sequence derived from alignment at chr5:702614..704672- (Nannochloropsis oceanica)
ATGTCATCCTCAGGCAAAAAGGTTACGGAGGAGTCTCCGCTCAAGCACTT
TCGCGACGTGGTTCAACGCCGGCTGATGCGGGACGTGATCGAGGCAGCTG
CAGGCTTGAGCCGTGGGTGGATGGTCATGGTAATTGACGACGCGGCCTTG
CGCGTGGTCTCGGCCTTAGTGGGCATGTACGACGTGATGGAGCACCGTGT
CACGCTGATTGAACTGCTGTCAAAGAAGCGGCAGCCATTGCCCGAGATGG
AGGTCATTTATCTGGTGACCCCGACCCTAGAGACCATCAACCTGATTCTC
AAGGACTTTTCCGACCCCAAGAGGCCGCGTTACGGTGCGGTGCACCTATT
CTTTTTATCGAAGGTGAACGACACACTTATGCAGCGGTTGGGGACCGCGC
CGAATCTTTCGCAGCGCGTCCAGACGTTCAAAGAAGTCAACATGAATTTC
CTTGCTACCGAGGCGTCAGCCTTCCACCTTGACATGCCCCGCTGCTTGCC
CGGCCTTTTTAGCAGTCGCCCCGACGACACTATCTTGGACGAGGTGGTCG
ATAAGCTGGTTTCGCTCTGTGTAACCTTGAATGAGTACCCGCACGTCCGC
TTCAACCAAAACAGCGTTTTGGGTGCCCGCATTGCCACGCTAGTCCAGGA
CGGGCTCAATGACTTCGTCGCTCGTCAAGAAGACTGGTGGTACCATGGGC
AGACCGGACACATGGATAGAGAGCGGGCCACTTTTCTCATTTTGGATCGC
GCGGAGGACCCATTGACGCCGTTGATTCATGAGCATACGTATCAGGCGAT
AGTCCAAGATTTACTGCAAGTAGAGGATGACATGATTACTTTTCAGTCGG
AGGGGAAAGGCGGGCGGCACGAAACCAAGGCCTTGCTGAATGAGTCGGAT
GCGTTATGGGCTGAGTTTCGGCACCAGCATATTGCGAAGGTAATGGAGCA
AATTGGGGAGCGCACACGGGATTACATTCAGGCGAATGCCGGTGTGGAGA
TGACGAGGAAGTTGGGGACGAATGCCAAAATGTCACCCCATGAACTGGCT
TTGATTGTGAAGCAGCTTCCAGAATATCGGGAGATGACGGGAAAATTGTG
GATGCACTATTCGATTACCACGGATGTGATGGCGAGGTTTCAGCATTTTG
GGGTGTTGGATTTGTCGGAGCTGGAGCAGACGCTGGCGACGGGGGTGGAT
GGGGATGGGAGAAGCGTTAAGGAGGAGAAGATGTTGCAGAGGTAGGGCGG
TGGATGGGTGGGTTTGGGGAAGACTGGAGAAAACTTAGGGGAAGTCGTAT
TTACTGTTGGTTTGAATCTAAGTCGTGATTGGGCGCTGTGGCCGTGACAT
GCCGTGAGTGGGAGAGAAGAATTTTATCGCTTCCTCCTATGTAAACCAGC
CCACTCATATCTCATATTCCCTTCCTTCAACGATTTATAGCTTGGAGACG
ATGCTGATGGGCTTGGAGAGCGCGGGCATGACACTGGCAAACAAGATGCG
CCTCATCGCCATCTTCATCATTGCCCAAGGGGGCATCACCGAGGAGGCCC
GTCGCACACTCGTGGCGGCAGCAGGCTTGACTACCGAAGACCAAAACGCC
CTGATCCACCTCGAGGCTTTGGGTGTGAAAGTGCAAAAGTCCAAGAGCGG
GTCTTCGTCGATGTGGGGTGGCCAGGCTAAGAAGAACAAGCGCCGAGCCT
ATCAAGACTCCGAGTACGCCGCCAGCCGCTATGTATGCGCCCTCAAGGAC
CTCATCGATCAAATTGTTCAAGGTGAACTCTCCACTGAAGTCTACCCCTC
TGTACTCCCTATGCCTTCGCTTGTAGGAAAACCCGTGGCCCGTTCCTTGC
GCAAGCCCGAGAAGGGTCGTTTGGGGAAGCAACCTGGGAGCTACACGGGC
GCCCGATCGTTGATCTTTGTAGCGGGCGGTGTGTCATTTTCTGAGCTCCG
AGCCGCCTATGAGGTAATGGAGCGACAAAAAAAGGAAGTGATCATTGGTG
GCACCTCCTACCTCACGCCCAACACGTTTGTGGACTTGCTGCGGGCTATT
AAGATCTAA

Coding sequence (CDS) from alignment at chr5:702614..704672-

>NO05G02650.1 ID=NO05G02650.1|Name=NO05G02650.1|organism=Nannochloropsis oceanica|type=CDS|length=1860bp|location=Sequence derived from alignment at chr5:702614..704672- (Nannochloropsis oceanica)
ATGTCATCCTCAGGCAAAAAGGTTACGGAGGAGTCTCCGCTCAAGCACTT
TCGCGACGTGGTTCAACGCCGGCTGATGCGGGACGTGATCGAGGCAGCTG
CAGGCTTGAGCCGTGGGTGGATGGTCATGGTAATTGACGACGCGGCCTTG
CGCGTGGTCTCGGCCTTAGTGGGCATGTACGACGTGATGGAGCACCGTGT
CACGCTGATTGAACTGCTGTCAAAGAAGCGGCAGCCATTGCCCGAGATGG
AGGTCATTTATCTGGTGACCCCGACCCTAGAGACCATCAACCTGATTCTC
AAGGACTTTTCCGACCCCAAGAGGCCGCGTTACGGTGCGGTGCACCTATT
CTTTTTATCGAAGGTGAACGACACACTTATGCAGCGGTTGGGGACCGCGC
CGAATCTTTCGCAGCGCGTCCAGACGTTCAAAGAAGTCAACATGAATTTC
CTTGCTACCGAGGCGTCAGCCTTCCACCTTGACATGCCCCGCTGCTTGCC
CGGCCTTTTTAGCAGTCGCCCCGACGACACTATCTTGGACGAGGTGGTCG
ATAAGCTGGTTTCGCTCTGTGTAACCTTGAATGAGTACCCGCACGTCCGC
TTCAACCAAAACAGCGTTTTGGGTGCCCGCATTGCCACGCTAGTCCAGGA
CGGGCTCAATGACTTCGTCGCTCGTCAAGAAGACTGGTGGTACCATGGGC
AGACCGGACACATGGATAGAGAGCGGGCCACTTTTCTCATTTTGGATCGC
GCGGAGGACCCATTGACGCCGTTGATTCATGAGCATACGTATCAGGCGAT
AGTCCAAGATTTACTGCAAGTAGAGGATGACATGATTACTTTTCAGTCGG
AGGGGAAAGGCGGGCGGCACGAAACCAAGGCCTTGCTGAATGAGTCGGAT
GCGTTATGGGCTGAGTTTCGGCACCAGCATATTGCGAAGGTAATGGAGCA
AATTGGGGAGCGCACACGGGATTACATTCAGGCGAATGCCGGTGTGGAGA
TGACGAGGAAGTTGGGGACGAATGCCAAAATGTCACCCCATGAACTGGCT
TTGATTGTGAAGCAGCTTCCAGAATATCGGGAGATGACGGGAAAATTGTG
GATGCACTATTCGATTACCACGGATGTGATGGCGAGGTTTCAGCATTTTG
GGGTGTTGGATTTGTCGGAGCTGGAGCAGACGCTGGCGACGGGGGTGGAT
GGGGATGGGAGAAGCGTTAAGGAGGAGAAGATGTTGCAGAGCTTGGAGAC
GATGCTGATGGGCTTGGAGAGCGCGGGCATGACACTGGCAAACAAGATGC
GCCTCATCGCCATCTTCATCATTGCCCAAGGGGGCATCACCGAGGAGGCC
CGTCGCACACTCGTGGCGGCAGCAGGCTTGACTACCGAAGACCAAAACGC
CCTGATCCACCTCGAGGCTTTGGGTGTGAAAGTGCAAAAGTCCAAGAGCG
GGTCTTCGTCGATGTGGGGTGGCCAGGCTAAGAAGAACAAGCGCCGAGCC
TATCAAGACTCCGAGTACGCCGCCAGCCGCTATGTATGCGCCCTCAAGGA
CCTCATCGATCAAATTGTTCAAGGTGAACTCTCCACTGAAGTCTACCCCT
CTGTACTCCCTATGCCTTCGCTTGTAGGAAAACCCGTGGCCCGTTCCTTG
CGCAAGCCCGAGAAGGGTCGTTTGGGGAAGCAACCTGGGAGCTACACGGG
CGCCCGATCGTTGATCTTTGTAGCGGGCGGTGTGTCATTTTCTGAGCTCC
GAGCCGCCTATGAGGTAATGGAGCGACAAAAAAAGGAAGTGATCATTGGT
GGCACCTCCTACCTCACGCCCAACACGTTTGTGGACTTGCTGCGGGCTAT
TAAGATCTAA

Synonyms

Publications