NO05G02620.1, NO05G02620.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02620.1
Unique NameNO05G02620.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1525
Alignment locationchr5:696187..697958 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:696187..697958 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02620.1 vs.
Match: EWM28101.1 (histidinol dehydrogenase [Nannochloropsis gaditana])

HSP 1 Score: 700.3 bits (1806), Expect = 3.800e-198
Identity = 366/429 (85.31%), Postives = 395/429 (92.07%), Query Frame = 0 
Query:    1 MATDDLPRLRVVSLAEVDDLAKLNEPVEPLARHQAMEIINDIKTNGKTALLQQALRLGDIKSLQDPIILGRADLEKAWLSLTDGQREMLQRTRERIEAFAKAQRSAIQDVSISIPGGSAGHTIAPMAVAGCYAPGGRYPLPSSVLMTAVTAKAAGVTKVWVASPRPSAVTLGAAFIAEADAFLAVGGAQAVAALAYGVDGVDASDIVVGPGNKWVTAAKSLISGVCAIDMLAGPSEVLVIADATADPQTIAADLLAQAEHDVEARPILVATSRNVIDQVNDALVQQLSILPTGETARHAVLKGFAVAVNSVEECILVSDKIAPEHLEIQTADAKAVAFRCKNYGAVFIGHGAAEVLGDYGAGPNHVLPTGGTAKYTGGLSVFTFLRVRTWMSMDDLHGGQVVVKDAVELARLEGLEGHARAAEKRLLPA 430
            M  D  PRLR+V  +EVDDLAKLNEPVE LAR QAMEII DIK NGK ALLQQA+RLGDIKS ++PI+LG+ +LEKAW+SLT GQREMLQRTR+RIEAFA AQR AI DVS++IPGGSAGHTIAPM VAGCYAPGGRYPLPSSVLMTAVTA+AAGV KVWVASPRPSAVTLGAAFIA+ADAFLAVGGAQAVAALAYGV GVDA DI+VGPGNKWVTAAKSLISGVCAIDMLAGPSEVLV+ADA AD QT+AADLLAQAEHDVEARPILVATSR+VID VN+AL +QL++LPTGETAR AVLKGFAV V+S+EE I +SDKIAPEHLEIQTA+A  VAFRC+NYGAVFIGHGAAEVLGDYGAGPNHVLPTGGTAKYTGGLSVFTFLR+RTWM M+D  GGQVVVKDAVELARLEGLEGHARAAEKRLLPA
Sbjct:    1 MVVDSHPRLRLVRASEVDDLAKLNEPVEALARTQAMEIIEDIKANGKVALLQQAVRLGDIKSTEEPILLGKPELEKAWMSLTPGQREMLQRTRDRIEAFATAQRGAINDVSMTIPGGSAGHTIAPMGVAGCYAPGGRYPLPSSVLMTAVTARAAGVGKVWVASPRPSAVTLGAAFIAQADAFLAVGGAQAVAALAYGVGGVDACDIIVGPGNKWVTAAKSLISGVCAIDMLAGPSEVLVLADANADVQTVAADLLAQAEHDVEARPILVATSRHVIDSVNEALGEQLAVLPTGETARAAVLKGFAVEVSSIEEGIQISDKIAPEHLEIQTAEASDVAFRCRNYGAVFIGHGAAEVLGDYGAGPNHVLPTGGTAKYTGGLSVFTFLRIRTWMQMEDALGGQVVVKDAVELARLEGLEGHARAAEKRLLPA 429
The following BLAST results are available for this feature:
BLAST of NO05G02620.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28101.13.800e-19885.31histidinol dehydrogenase [Nannochloropsis gaditana... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02620NO05G02620Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02620.1NO05G02620.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02620.1.cds1NO05G02620.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02620.1.cds2NO05G02620.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02620.1 ID=NO05G02620.1|Name=NO05G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1525bp
ATCACAGGCACTTGCACGACCTGTCTGCTCTCTATTGTCGCCTGCATCAC
GTGACTCCAAGTGCCTATTATTACAATGGCAACTGACGACCTTCCACGCC
TGCGTGTCGTGAGCCTTGCTGAAGTGGATGACCTGGCCAAGCTCAATGAG
CCCGTGGAACCCTTGGCCCGCCATCAGGCCATGGAGATCATCAACGACAT
CAAGACAAACGGCAAGACCGCCCTTCTTCAACAAGCCCTCAGACTCGGCG
ACATCAAATCACTACAAGACCCCATTATCCTTGGTCGGGCCGATCTCGAA
AAGGCATGGTTGTCCCTCACCGACGGACAACGTGAAATGCTCCAACGAAC
ACGAGAGCGGATCGAAGCCTTTGCCAAAGCCCAACGCAGCGCCATCCAAG
ACGTCTCAATTTCCATTCCCGGGGGATCAGCAGGGCACACCATTGCGCCC
ATGGCCGTCGCAGGTTGTTACGCCCCCGGAGGTCGATACCCTCTCCCTTC
CTCTGTGCTGATGACAGCGGTAACTGCCAAAGCAGCAGGCGTGACGAAGG
TGTGGGTGGCCTCCCCCCGTCCTTCTGCCGTGACACTCGGCGCTGCGTTC
ATTGCGGAAGCAGATGCCTTTTTGGCAGTCGGTGGGGCACAGGCTGTGGC
AGCACTGGCTTATGGAGTGGATGGTGTGGATGCGAGTGATATAGTTGTTG
GGCCGGGGAACAAATGGGTCACTGCGGCGAAGAGTCTCATTTCGGGCGTT
TGTGCGATTGACATGCTGGCAGGGCCTTCAGAGGTGTTGGTCATCGCGGA
TGCGACAGCGGACCCGCAGACCATCGCGGCAGATTTGCTAGCGCAGGCGG
AGCATGATGTAGAGGCAAGGCCTATTCTGGTGGCGACCTCGAGGAATGTC
ATCGATCAAGTGAATGATGCCCTGGTGCAGCAACTCTCCATCCTGCCCAC
GGGGGAAACAGCCCGCCATGCCGTCTTAAAGGGGTTTGCGGTGGCGGTTA
ATAGCGTAGAGGAGTGCATTTTAGTGTCCGATAAAATTGCCCCTGAGCAT
CTGGAGATCCAGACGGCTGACGCCAAAGCCGTCGCTTTCCGCTGTAAGAA
CTACGGAGCTGTGTTCATTGGTCATGGAGCGGCGGAGGTCTTGGGGGATT
ATGGTGCGGGTCCAAACCATGTGTTGCCGACAGGTGGCACCGCTAAATAT
ACAGGGGGTTTAAGTGTCTTTACGTTCTTGAGGGTGCGGACGTGGATGAG
TATGGACGACCTGCATGGGGGGCAGGTGGTGGTGAAGGACGCGGTGGAGC
TGGCACGCTTGGAAGGGCTTGAGGGCCATGCACGGGCGGCAGAGAAGAGG
CTTTTGCCGGCGTAAGGTTGATGAAGAAGTCATGATTAAAGGAAGTATAA
CGTTGTGCTCGAAATGTTAGATGCGTGTGAATGATGAGTATCTTCATGAG
TAGCTGGATGAGTGGGAGAATGGGAGATTGGTGGAAAGAAAAAGTTGTAG
AAGAGGAAGGGAAATAAAACGTTCT
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protein sequence of NO05G02620.1

>NO05G02620.1-protein ID=NO05G02620.1-protein|Name=NO05G02620.1|organism=Nannochloropsis oceanica|type=polypeptide|length=430bp
MATDDLPRLRVVSLAEVDDLAKLNEPVEPLARHQAMEIINDIKTNGKTAL
LQQALRLGDIKSLQDPIILGRADLEKAWLSLTDGQREMLQRTRERIEAFA
KAQRSAIQDVSISIPGGSAGHTIAPMAVAGCYAPGGRYPLPSSVLMTAVT
AKAAGVTKVWVASPRPSAVTLGAAFIAEADAFLAVGGAQAVAALAYGVDG
VDASDIVVGPGNKWVTAAKSLISGVCAIDMLAGPSEVLVIADATADPQTI
AADLLAQAEHDVEARPILVATSRNVIDQVNDALVQQLSILPTGETARHAV
LKGFAVAVNSVEECILVSDKIAPEHLEIQTADAKAVAFRCKNYGAVFIGH
GAAEVLGDYGAGPNHVLPTGGTAKYTGGLSVFTFLRVRTWMSMDDLHGGQ
VVVKDAVELARLEGLEGHARAAEKRLLPA*
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mRNA from alignment at chr5:696187..697958+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02620.1 ID=NO05G02620.1|Name=NO05G02620.1|organism=Nannochloropsis oceanica|type=mRNA|length=1772bp|location=Sequence derived from alignment at chr5:696187..697958+ (Nannochloropsis oceanica)
ATCACAGGCACTTGCACGACCTGTCTGCTCTCTATTGTCGCCTGCATCAC
GTGACTCCAAGTGCCTATTATTACAATGGCAACTGACGACCTTCCACGCC
TGCGTGTCGTGAGCCTTGCTGAAGTGGATGACCTGGCCAAGCTCAATGAG
CCCGTGGAACCCTTGGCCCGCCATCAGGCCATGGAGATCATCAACGACAT
CAAGGTAAGTTTGCAGGGGTCATTTATGGCTTTTCACTCGCGCCTACACG
TGACAGGTGACGTGACCAGCTTGGACACAGGCATGGCACGAGCATGGAGA
CGATCCTCCTCAACCTACGAGGCTACTCGCACTCGACGTCCCGCGCTCTT
TGCATGGTTGTGCGAGGGGGAACGCCACTTACTGCATGGCAGTAGACAGC
ATATCCTCATCCCATCCCATATCACTTATTCTGCGACCACACCAAACCCA
GACAAACGGCAAGACCGCCCTTCTTCAACAAGCCCTCAGACTCGGCGACA
TCAAATCACTACAAGACCCCATTATCCTTGGTCGGGCCGATCTCGAAAAG
GCATGGTTGTCCCTCACCGACGGACAACGTGAAATGCTCCAACGAACACG
AGAGCGGATCGAAGCCTTTGCCAAAGCCCAACGCAGCGCCATCCAAGACG
TCTCAATTTCCATTCCCGGGGGATCAGCAGGGCACACCATTGCGCCCATG
GCCGTCGCAGGTTGTTACGCCCCCGGAGGTCGATACCCTCTCCCTTCCTC
TGTGCTGATGACAGCGGTAACTGCCAAAGCAGCAGGCGTGACGAAGGTGT
GGGTGGCCTCCCCCCGTCCTTCTGCCGTGACACTCGGCGCTGCGTTCATT
GCGGAAGCAGATGCCTTTTTGGCAGTCGGTGGGGCACAGGCTGTGGCAGC
ACTGGCTTATGGAGTGGATGGTGTGGATGCGAGTGATATAGTTGTTGGGC
CGGGGAACAAATGGGTCACTGCGGCGAAGAGTCTCATTTCGGGCGTTTGT
GCGATTGACATGCTGGCAGGGCCTTCAGAGGTGTTGGTCATCGCGGATGC
GACAGCGGACCCGCAGACCATCGCGGCAGATTTGCTAGCGCAGGCGGAGC
ATGATGTAGAGGCAAGGCCTATTCTGGTGGCGACCTCGAGGAATGTCATC
GATCAAGTGAATGATGCCCTGGTGCAGCAACTCTCCATCCTGCCCACGGG
GGAAACAGCCCGCCATGCCGTCTTAAAGGGGTTTGCGGTGGCGGTTAATA
GCGTAGAGGAGTGCATTTTAGTGTCCGATAAAATTGCCCCTGAGCATCTG
GAGATCCAGACGGCTGACGCCAAAGCCGTCGCTTTCCGCTGTAAGAACTA
CGGAGCTGTGTTCATTGGTCATGGAGCGGCGGAGGTCTTGGGGGATTATG
GTGCGGGTCCAAACCATGTGTTGCCGACAGGTGGCACCGCTAAATATACA
GGGGGTTTAAGTGTCTTTACGTTCTTGAGGGTGCGGACGTGGATGAGTAT
GGACGACCTGCATGGGGGGCAGGTGGTGGTGAAGGACGCGGTGGAGCTGG
CACGCTTGGAAGGGCTTGAGGGCCATGCACGGGCGGCAGAGAAGAGGCTT
TTGCCGGCGTAAGGTTGATGAAGAAGTCATGATTAAAGGAAGTATAACGT
TGTGCTCGAAATGTTAGATGCGTGTGAATGATGAGTATCTTCATGAGTAG
CTGGATGAGTGGGAGAATGGGAGATTGGTGGAAAGAAAAAGTTGTAGAAG
AGGAAGGGAAATAAAACGTTCT
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Coding sequence (CDS) from alignment at chr5:696187..697958+

>NO05G02620.1 ID=NO05G02620.1|Name=NO05G02620.1|organism=Nannochloropsis oceanica|type=CDS|length=1290bp|location=Sequence derived from alignment at chr5:696187..697958+ (Nannochloropsis oceanica)
ATGGCAACTGACGACCTTCCACGCCTGCGTGTCGTGAGCCTTGCTGAAGT
GGATGACCTGGCCAAGCTCAATGAGCCCGTGGAACCCTTGGCCCGCCATC
AGGCCATGGAGATCATCAACGACATCAAGACAAACGGCAAGACCGCCCTT
CTTCAACAAGCCCTCAGACTCGGCGACATCAAATCACTACAAGACCCCAT
TATCCTTGGTCGGGCCGATCTCGAAAAGGCATGGTTGTCCCTCACCGACG
GACAACGTGAAATGCTCCAACGAACACGAGAGCGGATCGAAGCCTTTGCC
AAAGCCCAACGCAGCGCCATCCAAGACGTCTCAATTTCCATTCCCGGGGG
ATCAGCAGGGCACACCATTGCGCCCATGGCCGTCGCAGGTTGTTACGCCC
CCGGAGGTCGATACCCTCTCCCTTCCTCTGTGCTGATGACAGCGGTAACT
GCCAAAGCAGCAGGCGTGACGAAGGTGTGGGTGGCCTCCCCCCGTCCTTC
TGCCGTGACACTCGGCGCTGCGTTCATTGCGGAAGCAGATGCCTTTTTGG
CAGTCGGTGGGGCACAGGCTGTGGCAGCACTGGCTTATGGAGTGGATGGT
GTGGATGCGAGTGATATAGTTGTTGGGCCGGGGAACAAATGGGTCACTGC
GGCGAAGAGTCTCATTTCGGGCGTTTGTGCGATTGACATGCTGGCAGGGC
CTTCAGAGGTGTTGGTCATCGCGGATGCGACAGCGGACCCGCAGACCATC
GCGGCAGATTTGCTAGCGCAGGCGGAGCATGATGTAGAGGCAAGGCCTAT
TCTGGTGGCGACCTCGAGGAATGTCATCGATCAAGTGAATGATGCCCTGG
TGCAGCAACTCTCCATCCTGCCCACGGGGGAAACAGCCCGCCATGCCGTC
TTAAAGGGGTTTGCGGTGGCGGTTAATAGCGTAGAGGAGTGCATTTTAGT
GTCCGATAAAATTGCCCCTGAGCATCTGGAGATCCAGACGGCTGACGCCA
AAGCCGTCGCTTTCCGCTGTAAGAACTACGGAGCTGTGTTCATTGGTCAT
GGAGCGGCGGAGGTCTTGGGGGATTATGGTGCGGGTCCAAACCATGTGTT
GCCGACAGGTGGCACCGCTAAATATACAGGGGGTTTAAGTGTCTTTACGT
TCTTGAGGGTGCGGACGTGGATGAGTATGGACGACCTGCATGGGGGGCAG
GTGGTGGTGAAGGACGCGGTGGAGCTGGCACGCTTGGAAGGGCTTGAGGG
CCATGCACGGGCGGCAGAGAAGAGGCTTTTGCCGGCGTAA
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Synonyms
Publications