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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:692265..695950 - |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02610.1 vs.
Match: EWM28116.1 (hypothetical protein Naga_100036g35 [Nannochloropsis gaditana]) HSP 1 Score: 149.8 bits (377), Expect = 2.300e-32 Identity = 103/260 (39.62%), Postives = 146/260 (56.15%), Query Frame = 0
Query: 1 MSPVDDYDDDDDDLLMTDPIAEAKEEQQRRNCSAARHSGISSEEERGGIGRGGGNEEEEE----RRGVVSTSPADAAAPVLITSQEIDSTSNIDDEGSGRDDYEGKYTITPLVDLERLKWTKEGDAERGLFWVPVRVMTVNEIALEQVGEGKLPEGKVWVRYFPTKDTDKKQHKVKKEADLIPFNYGEEGGALRWSSYYKAMAPRPPKSKDKKNVDSSQTNTTLADAGPAANDNDDHDNTVTVSANGKKIEKKKKGRRPA 257
M D+ D DDD LL D IA A +E +RRN S + ++ GG + GNE ++ + G + + + A + + +S S DDE S +DDYEG Y + PL+DLERLKWT EG WVP R + E ALE +G+ +L EG+VWVRYFPT++TD KQH KK DL+PFNY E+GGA RWSS++K + PR ++ K+ + +T+ A D + +++A KK E ++ RR A
Sbjct: 1 MDGTDEDDLDDDGLLTLDVIATAVDEHRRRNSSGY---AATLDDAHGG-DKEKGNETQDRPWILQDGDGAPNGMHSGAK---SGRGNESYSGSDDEASLKDDYEGSYEVVPLLDLERLKWTNEGG-----IWVPCRTLLQMEAALENLGDHELEEGEVWVRYFPTRNTDHKQHMRKKREDLMPFNYQEDGGAARWSSHFKNLGPRASVARKKRRLTVKKTSAYTYKNWSIAMDFAEKTLEASLAAQRKKNEHMERERRLA 248
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02610.1 ID=NO05G02610.1|Name=NO05G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3391bp CAGGCTCATCGTGACACCGTCGGCGGGATCGCAAGCCGCAGACGAGCCAC AGAGACTAGGACTCAGTCAAGATGTCACCAGTGGACGACTACGACGACGA CGATGACGACCTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAGC AGCAGCGGCGCAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGAA GAGGAAAGGGGAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGGA AAGGAGAGGAGTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTAC TCATAACCTCGCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGGC TCAGGGAGGGATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGGA CTTGGAGCGGCTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTAT TCTGGGTGCCCGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCAA GTTGGGGAGGGCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTCC CACGAAGGATACTGACAAAAAGCAACACAAAGTCAAAAAAGAGGCCGATC TCATTCCTTTCAACTATGGAGAAGAAGGGGGGGCGTTGCGCTGGAGCAGT TATTACAAGGCCATGGCTCCCCGACCCCCGAAATCCAAGGACAAGAAAAA CGTGGACTCCTCCCAGACCAACACTACCCTTGCTGATGCTGGCCCCGCTG CCAATGATAACGACGACCATGACAACACGGTTACCGTCAGCGCCAACGGC AAGAAGATAGAGAAGAAGAAAAAGGGACGAAGGCCAGCCAAACGTATGGC CCCCAAAAAGCCGCCTATCTACACGCACGCCCAGTGGAGCAAGAGCATGC AGTATGCGGAGATGACCCTCCAAGACTCCCTAACCGTGATATGGGCCAAG AAAGATCAGATTCAGCGGGAGCGTCAATTAGCAGCTTCATTGGCTGTGGT TACTCCTGACGAGGAGGAGGAAGAAGGTGGTTGTGAAGTAGAGCGAGGAC AGAGTGAGGTTATTAGCAGCCTCTATGCCCAGAGCCCAACCTTAGCAGGG AAGAGGAAGGGAAGAGGGAATGTGGTCTTGCAGCTTGGGGATAGGATTCA ATTCAAGTCCCGCCTCGAGAAGGCCGGGACGTTTTACGAGGCCACTGTCA TAGGAATAGATCCCCCCAAGCAGAAGGAGGAGGGAGGCATCCCGCTCACT TTGCGTCCGAGCGCCTTTCTCGACGTGGACGTGCACGTGCAGAAGGTCGC CAAGTACAACGCGAGGAGGGGGACCTGGAAGGACGTCCCGGAGGGGAGTC GGAAGTTCATGGCCTTGCGGGAGCATGACATGGGGAAAAAGGCGGTGCAG GCCGATGAGAAATTGTTGAGCCTGTTGGCGCCCTCGATGGCGGCACAGGT GAAAAAGGTGATGGCGGAGGAGCAGGCCAGATTGAACGAGGATATCCGCT TGGTTTTAGAGGGGGAAATTGACGTGGAAGAGGATAAAGCTGGGGAGGAG GAAGAGGAGGAGGAGGAGGGAGTAGGGGAGGAGGAGGAACGGAGAGAGTC GCCGAGGAAGAAACAGAAGAAGAATGGAAGTGGAGAGGGATGAGGGAAAT GGCAGCACAGGGCCTGGGCGCGCAGGAGCCAGATACAAATAATTGAGTTG TTCTGGTCTGGGTCTCGAGGGAGAGGAGGAGGGAGCGGAGAGACAACAGC CGTCCAAGAAGTAGGAAAAGAGGGGAAGTGAGGAGGGAGGGGGGAGAAGG CGGAGGTCGTATCGAAGGTACGCGGGTGAAAGCCAGATGCTGCAGCTGGT GTTGCTGATCTGTGTTTGGAACGATAAACATGCAGAGAGGGAGAGGAGAA GGGAGGGCTTTCCGACGAAGAGGAATATAAGGAGGACGCCCCTCCCCGTA ACGCCGGTAGCAACCGCCCTTGCAGCCGGGTTAGCCCATGTGGGAAGAGG AGGAACGTAAGGGACGCTGTGGAGAAAGATGCAAATGTGTAGCGGTGTCG GGAAGGAAAAGGGGATGAAACAGAGGAACCCATGATGTAAATGAATGAAA GAGGACTGTTTGGGGAAGAGCGCAGCGGAGGAAGGGAGAGCCATGTAAAA AATGAAGGGATGGAGGGAGAGCGGACGTAAAACAGTAAGGGTCATACGCA GACACGGAATGTCATCTTGTGGTCTTTATCATCCAACTCTTGAATAAGTA GCAAAGAGAGGCATGCGAGACAAACATGTCTGGAGTATGGAGAATGGAAG ACATTGAGAGAAAGCAGTGACGGGGTGACAACATGAAAAAGTAATAAACA GATACCTACATCTGGAATACTCACAGCAAATATTCGGTCGAAGCTCAGAG AAAGAGAAAAAGACAGGAATGAGACGTACCTCAAACCATCTAACGACGCT TAACACTATGCGGACAACTAATGGAAGGTAAGTTTCTTTTGCCCACTTCG TTCTCGCTCCCAATTCTCTTTTCTTCTCTTGTCTCTCTTGACTACCGCGC TTTCATTTCCGACAGGTGGCCGTGTGTATACAAACAAAAAGAAGACCATC TTCCCAAAAAAATAAAGCTCTTCTGGGGAGGGAGAGCGCAAAGAACCCTA TTGGTATGAAATTAAAAGTATTATAAAAGAATAAAAAATAGAAGGGAAAG AAGAGGCCACCCTCCTTTGTCCTGCTGACCTCTTAAGTGCTAACACGGAA GTCCTATTGCATGAAGTGATCTATTCCTCTCTCTGTGGCCTTTCCACTTT AGTCGTTGGCATCCTTCCCCACCTCTCTGGATTGTCCCTATTACTCTTGT TCGCTCTCGAATCACATTCAACTCCAACTTCACATGGACTTAAATTTCTT TTCCGAAAAGAAAATCATTCCCCCTCTCTTTCTCCTTCGTGCACATGTAT AAATACACTTTTGGTTTCGCTTCTTTTCAGCGCAAACTCAACATCCGCTC TCCATCATTCTGATGCCTCGCGGATTTTGGGGGCTCGCCTTTAACCCTTT CGGTCGTTGATGTTGTTTGTAGTGGGATGACGGTCTTGCAGAGGATAACA GGTGATATTCATTGATTAAAATTTTCTAGTTATTATTTCTTATAGATGAT GATGATCGTGTTGACGTTCTCCCCTGCATTCTTTATCTTCTAGTTGTCTT CTCTCTTCTCCTTTCTCTCTAGTGTAGGCTGCCTATTACTTCATTTCGTG GTTGGTCTGGTGGGACAGAGAAGAGTGACGGAATACCTTACACAGCTTTG ACACACACACACACACACACACACACACTCTCTTTCTCTCTCTCCTTCTC TCTCTCTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCT back to topprotein sequence of NO05G02610.1 >NO05G02610.1-protein ID=NO05G02610.1-protein|Name=NO05G02610.1|organism=Nannochloropsis oceanica|type=polypeptide|length=524bp MSPVDDYDDDDDDLLMTDPIAEAKEEQQRRNCSAARHSGISSEEERGGIG RGGGNEEEEERRGVVSTSPADAAAPVLITSQEIDSTSNIDDEGSGRDDYE GKYTITPLVDLERLKWTKEGDAERGLFWVPVRVMTVNEIALEQVGEGKLP EGKVWVRYFPTKDTDKKQHKVKKEADLIPFNYGEEGGALRWSSYYKAMAP RPPKSKDKKNVDSSQTNTTLADAGPAANDNDDHDNTVTVSANGKKIEKKK KGRRPAKRMAPKKPPIYTHAQWSKSMQYAEMTLQDSLTVIWAKKDQIQRE RQLAASLAVVTPDEEEEEGGCEVERGQSEVISSLYAQSPTLAGKRKGRGN VVLQLGDRIQFKSRLEKAGTFYEATVIGIDPPKQKEEGGIPLTLRPSAFL DVDVHVQKVAKYNARRGTWKDVPEGSRKFMALREHDMGKKAVQADEKLLS LLAPSMAAQVKKVMAEEQARLNEDIRLVLEGEIDVEEDKAGEEEEEEEEG VGEEEERRESPRKKQKKNGSGEG* back to topmRNA from alignment at chr5:692265..695950- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02610.1 ID=NO05G02610.1|Name=NO05G02610.1|organism=Nannochloropsis oceanica|type=mRNA|length=3686bp|location=Sequence derived from alignment at chr5:692265..695950- (Nannochloropsis oceanica) CAGGCTCATCGTGACACCGTCGGCGGGATCGCAAGCCGCAGACGAGCCAC
AGAGACTAGGACTCAGTCAAGATGTCACCAGTGGACGACTACGACGACGA
CGATGACGACCTTCTAATGACGGACCCGATCGCGGAGGCAAAGGAGGAGC
AGCAGCGGCGCAACTGCTCTGCCGCTAGGCATTCGGGCATCAGCAGCGAA
GAGGAAAGGGGAGGAATAGGAAGAGGAGGCGGCAACGAGGAAGAGGAGGA
AAGGAGAGGAGTAGTGTCGACCAGCCCTGCGGATGCGGCAGCACCGGTAC
TCATAACCTCGCAAGAGATTGACAGCACTAGCAACATCGATGATGAGGGC
TCAGGGAGGGATGATTACGAGGGGAAATATACCATTACGCCCCTGGTGGA
CTTGGAGCGGCTGAAGTGGACAAAGGAAGGAGATGCAGAGAGGGGCTTAT
TCTGGGTGCCCGTCCGCGTGATGACCGTGAATGAAATCGCGCTGGAGCAA
GTTGGGGAGGGCAAATTACCAGAGGGAAAGGTCTGGGTCCGCTACTTTCC
CACGAAGGATACTGACAAAAAGTAAGTGAGGTAGGGATGGTGATGTGCAT
GTGCAGGCTTCGAACATGTGTTCTTTCTGTCTGACGACTAAGTATTTCTT
GCACCCCCCCCTAATTTCTTTCACCCCGTTACCATCCATTTAGGCAACAC
AAAGTCAAAAAAGAGGCCGATCTCATTCCTTTCAACTATGGAGAAGAAGG
GGGGGCGTTGCGCTGGAGCAGTTATTACAAGGCCATGGCTCCCCGACCCC
CGAAATCCAAGGACAAGAAAAACGTGGACTCCTCCCAGACCAACACTACC
CTTGCTGATGCTGGCCCCGCTGCCAATGATAACGACGACCATGACAACAC
GGTTACCGTCAGCGCCAACGGCAAGAAGATAGAGAAGAAGAAAAAGGGAC
GAAGGCCAGCCAAACGTATGGCCCCCAAAAAGCCGCCTATCTACACGCAC
GCCCAGTGGAGCAAGAGCATGCAGTATGCGGAGATGGTACGAAGAAGCAA
ATAACGACGACGACACAAAATTGATCATCCCCCTCTCTTTTCTAATTGAC
CCCTCCAGCTCCTTTCTAAGCGTCGTTTTCAACCCCCTTCCGTGGCACTC
ACATCCACTCATCACACACCTGTCTCTTACTCCTTTCTTCCCGCTTTTCT
CACACACAGACCCTCCAAGACTCCCTAACCGTGATATGGGCCAAGAAAGA
TCAGATTCAGCGGGAGCGTCAATTAGCAGCTTCATTGGCTGTGGTTACTC
CTGACGAGGAGGAGGAAGAAGGTGGTTGTGAAGTAGAGCGAGGACAGAGT
GAGGTTATTAGCAGCCTCTATGCCCAGAGCCCAACCTTAGCAGGGAAGAG
GAAGGGAAGAGGGAATGTGGTCTTGCAGCTTGGGGATAGGATTCAATTCA
AGTCCCGCCTCGAGAAGGCCGGGACGTTTTACGAGGCCACTGTCATAGGA
ATAGATCCCCCCAAGCAGAAGGAGGAGGGAGGCATCCCGCTCACTTTGCG
TCCGAGCGCCTTTCTCGACGTGGACGTGCACGTGCAGAAGGTCGCCAAGT
ACAACGCGAGGAGGGGGACCTGGAAGGACGTCCCGGAGGGGAGTCGGAAG
TTCATGGCCTTGCGGGAGCATGACATGGGGAAAAAGGCGGTGCAGGCCGA
TGAGAAATTGTTGAGCCTGTTGGCGCCCTCGATGGCGGCACAGGTGAAAA
AGGTGATGGCGGAGGAGCAGGCCAGATTGAACGAGGATATCCGCTTGGTT
TTAGAGGGGGAAATTGACGTGGAAGAGGATAAAGCTGGGGAGGAGGAAGA
GGAGGAGGAGGAGGGAGTAGGGGAGGAGGAGGAACGGAGAGAGTCGCCGA
GGAAGAAACAGAAGAAGAATGGAAGTGGAGAGGGATGAGGGAAATGGCAG
CACAGGGCCTGGGCGCGCAGGAGCCAGATACAAATAATTGAGTTGTTCTG
GTCTGGGTCTCGAGGGAGAGGAGGAGGGAGCGGAGAGACAACAGCCGTCC
AAGAAGTAGGAAAAGAGGGGAAGTGAGGAGGGAGGGGGGAGAAGGCGGAG
GTCGTATCGAAGGTACGCGGGTGAAAGCCAGATGCTGCAGCTGGTGTTGC
TGATCTGTGTTTGGAACGATAAACATGCAGAGAGGGAGAGGAGAAGGGAG
GGCTTTCCGACGAAGAGGAATATAAGGAGGACGCCCCTCCCCGTAACGCC
GGTAGCAACCGCCCTTGCAGCCGGGTTAGCCCATGTGGGAAGAGGAGGAA
CGTAAGGGACGCTGTGGAGAAAGATGCAAATGTGTAGCGGTGTCGGGAAG
GAAAAGGGGATGAAACAGAGGAACCCATGATGTAAATGAATGAAAGAGGA
CTGTTTGGGGAAGAGCGCAGCGGAGGAAGGGAGAGCCATGTAAAAAATGA
AGGGATGGAGGGAGAGCGGACGTAAAACAGTAAGGGTCATACGCAGACAC
GGAATGTCATCTTGTGGTCTTTATCATCCAACTCTTGAATAAGTAGCAAA
GAGAGGCATGCGAGACAAACATGTCTGGAGTATGGAGAATGGAAGACATT
GAGAGAAAGCAGTGACGGGGTGACAACATGAAAAAGTAATAAACAGATAC
CTACATCTGGAATACTCACAGCAAATATTCGGTCGAAGCTCAGAGAAAGA
GAAAAAGACAGGAATGAGACGTACCTCAAACCATCTAACGACGCTTAACA
CTATGCGGACAACTAATGGAAGGTAAGTTTCTTTTGCCCACTTCGTTCTC
GCTCCCAATTCTCTTTTCTTCTCTTGTCTCTCTTGACTACCGCGCTTTCA
TTTCCGACAGGTGGCCGTGTGTATACAAACAAAAAGAAGACCATCTTCCC
AAAAAAATAAAGCTCTTCTGGGGAGGGAGAGCGCAAAGAACCCTATTGGT
ATGAAATTAAAAGTATTATAAAAGAATAAAAAATAGAAGGGAAAGAAGAG
GCCACCCTCCTTTGTCCTGCTGACCTCTTAAGTGCTAACACGGAAGTCCT
ATTGCATGAAGTGATCTATTCCTCTCTCTGTGGCCTTTCCACTTTAGTCG
TTGGCATCCTTCCCCACCTCTCTGGATTGTCCCTATTACTCTTGTTCGCT
CTCGAATCACATTCAACTCCAACTTCACATGGACTTAAATTTCTTTTCCG
AAAAGAAAATCATTCCCCCTCTCTTTCTCCTTCGTGCACATGTATAAATA
CACTTTTGGTTTCGCTTCTTTTCAGCGCAAACTCAACATCCGCTCTCCAT
CATTCTGATGCCTCGCGGATTTTGGGGGCTCGCCTTTAACCCTTTCGGTC
GTTGATGTTGTTTGTAGTGGGATGACGGTCTTGCAGAGGATAACAGGTGA
TATTCATTGATTAAAATTTTCTAGTTATTATTTCTTATAGATGATGATGA
TCGTGTTGACGTTCTCCCCTGCATTCTTTATCTTCTAGTTGTCTTCTCTC
TTCTCCTTTCTCTCTAGTGTAGGCTGCCTATTACTTCATTTCGTGGTTGG
TCTGGTGGGACAGAGAAGAGTGACGGAATACCTTACACAGCTTTGACACA
CACACACACACACACACACACACTCTCTTTCTCTCTCTCCTTCTCTCTCT
CTCTCTCTTTCTTTCTCTCTCTCTCTCTCTCTCTCT back to topCoding sequence (CDS) from alignment at chr5:692265..695950- >NO05G02610.1 ID=NO05G02610.1|Name=NO05G02610.1|organism=Nannochloropsis oceanica|type=CDS|length=1572bp|location=Sequence derived from alignment at chr5:692265..695950- (Nannochloropsis oceanica) ATGTCACCAGTGGACGACTACGACGACGACGATGACGACCTTCTAATGAC GGACCCGATCGCGGAGGCAAAGGAGGAGCAGCAGCGGCGCAACTGCTCTG CCGCTAGGCATTCGGGCATCAGCAGCGAAGAGGAAAGGGGAGGAATAGGA AGAGGAGGCGGCAACGAGGAAGAGGAGGAAAGGAGAGGAGTAGTGTCGAC CAGCCCTGCGGATGCGGCAGCACCGGTACTCATAACCTCGCAAGAGATTG ACAGCACTAGCAACATCGATGATGAGGGCTCAGGGAGGGATGATTACGAG GGGAAATATACCATTACGCCCCTGGTGGACTTGGAGCGGCTGAAGTGGAC AAAGGAAGGAGATGCAGAGAGGGGCTTATTCTGGGTGCCCGTCCGCGTGA TGACCGTGAATGAAATCGCGCTGGAGCAAGTTGGGGAGGGCAAATTACCA GAGGGAAAGGTCTGGGTCCGCTACTTTCCCACGAAGGATACTGACAAAAA GCAACACAAAGTCAAAAAAGAGGCCGATCTCATTCCTTTCAACTATGGAG AAGAAGGGGGGGCGTTGCGCTGGAGCAGTTATTACAAGGCCATGGCTCCC CGACCCCCGAAATCCAAGGACAAGAAAAACGTGGACTCCTCCCAGACCAA CACTACCCTTGCTGATGCTGGCCCCGCTGCCAATGATAACGACGACCATG ACAACACGGTTACCGTCAGCGCCAACGGCAAGAAGATAGAGAAGAAGAAA AAGGGACGAAGGCCAGCCAAACGTATGGCCCCCAAAAAGCCGCCTATCTA CACGCACGCCCAGTGGAGCAAGAGCATGCAGTATGCGGAGATGACCCTCC AAGACTCCCTAACCGTGATATGGGCCAAGAAAGATCAGATTCAGCGGGAG CGTCAATTAGCAGCTTCATTGGCTGTGGTTACTCCTGACGAGGAGGAGGA AGAAGGTGGTTGTGAAGTAGAGCGAGGACAGAGTGAGGTTATTAGCAGCC TCTATGCCCAGAGCCCAACCTTAGCAGGGAAGAGGAAGGGAAGAGGGAAT GTGGTCTTGCAGCTTGGGGATAGGATTCAATTCAAGTCCCGCCTCGAGAA GGCCGGGACGTTTTACGAGGCCACTGTCATAGGAATAGATCCCCCCAAGC AGAAGGAGGAGGGAGGCATCCCGCTCACTTTGCGTCCGAGCGCCTTTCTC GACGTGGACGTGCACGTGCAGAAGGTCGCCAAGTACAACGCGAGGAGGGG GACCTGGAAGGACGTCCCGGAGGGGAGTCGGAAGTTCATGGCCTTGCGGG AGCATGACATGGGGAAAAAGGCGGTGCAGGCCGATGAGAAATTGTTGAGC CTGTTGGCGCCCTCGATGGCGGCACAGGTGAAAAAGGTGATGGCGGAGGA GCAGGCCAGATTGAACGAGGATATCCGCTTGGTTTTAGAGGGGGAAATTG ACGTGGAAGAGGATAAAGCTGGGGAGGAGGAAGAGGAGGAGGAGGAGGGA GTAGGGGAGGAGGAGGAACGGAGAGAGTCGCCGAGGAAGAAACAGAAGAA GAATGGAAGTGGAGAGGGATGA back to top
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