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Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
chr5 | genome | chr5:674693..677112 + |
Analyses
This mRNA is derived from or has results from the following analyses
Homology
BLAST of NO05G02560.2 vs.
Match: EWM28104.1 (threonine dehydratase [Nannochloropsis gaditana]) HSP 1 Score: 769.6 bits (1986), Expect = 6.900e-219 Identity = 393/440 (89.32%), Postives = 420/440 (95.45%), Query Frame = 0
Query: 1 MLGGGRWRRMTRLPASLLMQRAAASSSGASVAITGSSATEDFNSDHTDYLARILNARVYEIAIETPLQPAPCMSKAIHNNVLLKREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAVRRFGGPTVTVKLHGKNYDEASEEALRLAREEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGIASYVKAVRPSVKVIGVEAEDAAGMTTSLEAGHVITLDRVGLFADGAAVRVVGKETFRVCSQLVDEMVTVTTDEICAAIKAGFQDTRSVLEPAGALAIAGAKKYCAAEQWRDKTIVAIASGANMDFDRLRFVSERSDSTESLLSVRISERPGSFRQLYTGIFPRNVTEFSYRFNSPDTADVIISFQSMPNMNREEDKQQVLENIRHL 441
ML GG WRR+ +LPA++L+QRAAASSSGASV + +S T++F DHTDYLARILNARVYE+AIETPLQPAPCMSK IHNNVL KREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAV+RFGGPTV VKLHGKNYDEASEEA RL+REEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSG+A+YVKAVRPSVKVIGVEAEDAAGMTTSL+AGHV+ LDRVGLFADGAAVRVVG+ETFR+CS LVDEMVTVTTDEICAAIKAGFQDTRSV+EPAGALAIAGA+KYCAA+QWR KT+VAIASGANMDFDRLRFVSERSDSTE+LLSVRI+ERPGSFRQLY+GIFPRNVTEFSYRFNSPDTADVIISFQ M +REEDKQQVLENIR+L
Sbjct: 1 MLPGGGWRRVAQLPATMLLQRAAASSSGASVVSSANSMTDEF-PDHTDYLARILNARVYELAIETPLQPAPCMSKTIHNNVLFKREDLQPVFSFKLRGAYNKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIKVNAVKRFGGPTVVVKLHGKNYDEASEEAQRLSREEGLTMIHPFDDPDVIAGQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGVAAYVKAVRPSVKVIGVEAEDAAGMTTSLQAGHVVALDRVGLFADGAAVRVVGRETFRLCSHLVDEMVTVTTDEICAAIKAGFQDTRSVMEPAGALAIAGAQKYCAAQQWRGKTVVAIASGANMDFDRLRFVSERSDSTETLLSVRINERPGSFRQLYSGIFPRNVTEFSYRFNSPDTADVIISFQCMAGASREEDKQQVLENIRNL 439
The following BLAST results are available for this feature:
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >NO05G02560.2 ID=NO05G02560.2|Name=NO05G02560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp GGGCGTATTCTTTTGGTTATCTCAGATTGTCAAGACTCAAGGCCGGGTCA GCAAAGTCCCGGAAGAGGAAAAAATACTACACGTAAATCAAGAGGCCGCA TCGTTGCTCACTGAACAAACCAGCTTTGTCGTGTCCAGCCAACTCCAACC TGTCAGCAGCGGCATCAGCAACATCATCAGTCCTTGCAAGGGGAATGCTG GGCGGAGGTAGGTGGCGGCGGATGACACGACTACCAGCCTCATTGCTGAT GCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCTCGGTTGCAATTACGGGAA GTAGCGCGACGGAGGATTTCAACAGCGACCACACGGACTACTTGGCCCGT ATCCTTAATGCCCGTGTCTACGAGATTGCCATCGAGACGCCCTTACAACC AGCGCCCTGCATGTCCAAGGCGATTCATAACAATGTGTTGCTAAAGAGAG AAGATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTATAATAAA ATCGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGCCTGCTC GGCAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCAAAAATA TCAAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAAGTGAAT GCGGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCACGGAAA GAACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGGAGGAGG GCTTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCGGGGCAA GGCACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCCATTAGA TGCCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAATAGCTT CCTATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTCGAGGCG GAGGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGTTATAAC CTTGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGGTTGTGG GGAAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATGGTGACA GTGACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCAGGACAC GCGCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGGCAAAGA AATATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCGATTGCC TCGGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGAACGGTC GGATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGCCCGGGA GCTTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACAGAGTTT TCATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAGCTTTCA ATCCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGCTGGAAA ACATTCGTCACCTCGGTACGTCTTTATGTCTGCAGAGTCGTTTGATGTGG TTTCCGACCTTATATTTGTTGAGTGTACCTCTCCATTCCCTCTCATCTCC AACAACCCACGTACACACAGAGTTCGAGGTCGTCGACCTGAGCGCCAACG AAATGGCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCCCCACAC GTCAAAAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACCAGGTGC TTTGCATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCAGTCTCT TCCATTACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTTGGGCTG CAGGTTCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGAAACATT GTCGCATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTGTTTATT TTCAATTTCTGTACTGACCAGAGACGAGGTGAGAAGAGACGGAAGGAGAG GAGAGGGGGGCTGCGTGATGCATGTGTGGCTGCATTTAGAATTGACTGGA CCCTAACTGTGTGCCGCATGTTTCTAGGATGTAGGATAAGTTCCTTGCCT TTTTAAAGAGCACAATAAGATTTCTATTTCAATTAAAAAAGAAAAAAGAA AAAAGAATGACCTATGCGGGGG back to topprotein sequence of NO05G02560.2 >NO05G02560.2-protein ID=NO05G02560.2-protein|Name=NO05G02560.2|organism=Nannochloropsis oceanica|type=polypeptide|length=591bp MLGGGRWRRMTRLPASLLMQRAAASSSGASVAITGSSATEDFNSDHTDYL ARILNARVYEIAIETPLQPAPCMSKAIHNNVLLKREDLQPVFSFKLRGAY NKIVSTPAADLERGVVACSAGNHAQGVALSASRKNIKAVIVMPLATPQIK VNAVRRFGGPTVTVKLHGKNYDEASEEALRLAREEGLTMIHPFDDPDVIA GQGTIGMEILKATNGQPLDAIFVCVGGGGLLSGIASYVKAVRPSVKVIGV EAEDAAGMTTSLEAGHVITLDRVGLFADGAAVRVVGKETFRVCSQLVDEM VTVTTDEICAAIKAGFQDTRSVLEPAGALAIAGAKKYCAAEQWRDKTIVA IASGANMDFDRLRFVSERSDSTESLLSVRISERPGSFRQLYTGIFPRNVT EFSYRFNSPDTADVIISFQSMPNMNREEDKQQVLENIRHLGTSLCLQSRL MWFPTLYLLSVPLHSLSSPTTHVHTEFEVVDLSANEMAKAHARYLAGGRA PHVKNEQLYRFEFPERPGALHAFLTDLSKGWNVSLFHYRNQGGDIGRVLV GLQVPPEEFAEFQKWLETLSHLGYVYFAETKNPVYFQFLY* back to topmRNA from alignment at chr5:674693..677112+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >NO05G02560.2 ID=NO05G02560.2|Name=NO05G02560.2|organism=Nannochloropsis oceanica|type=mRNA|length=2420bp|location=Sequence derived from alignment at chr5:674693..677112+ (Nannochloropsis oceanica) GGGCGTATTCTTTTGGTTATCTCAGATTGTCAAGACTCAAGGCCGGGTCA
GCAAAGTCCCGGGTACGTCCCTCCACTTCCACTCGCCAGCGTGTGCTGAT
TGAAGTGGATATTTCTGGGCAATCAACCCCTCTGTCCACTCGCGTATGCT
CGCTCACGGTCCATCCACCCACCTATACAGAAGAGGAAAAAATACTACAC
GTAAATCAAGAGGCCGCATCGTTGCTCACTGAACAAACCAGCTTTGTCGT
GTCCAGCCAACTCCAACCTGTCAGCAGCGGCATCAGCAACATCATCAGTC
CTTGCAAGGGGAATGCTGGGCGGAGGTAGGTGGCGGCGGATGACACGACT
ACCAGCCTCATTGCTGATGCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCT
CGGTTGCAATTACGGGAAGTAGCGCGACGGAGGATTTCAACAGCGACCAC
ACGGACTACTTGGCCCGTATCCTTAATGCCCGTGTCTACGAGATTGCCAT
CGAGACGCCCTTACAACCAGCGCCCTGCATGTCCAAGGCGATTCATAACA
ATGTGTTGCTAAAGGTATGCGGAATTGATGCGAGATCGTGTCCTCTTAGA
CTTATCTTGATGGCGTATCATCGCGCATAACCTGTCTTTCTCTCTCACAG
CCGCACATCACATAAACTCGCACGCTCTCCCAATCCCTACACAGAGAGAA
GATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTATAATAAAAT
CGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGCCTGCTCGG
CAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCAAAAATATC
AAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAAGTGAATGC
GGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCACGGAAAGA
ACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGGAGGAGGGC
TTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCGGGGCAAGG
CACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCCATTAGATG
CCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAATAGCTTCC
TATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTCGAGGCGGA
GGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGTTATAACCT
TGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGGTTGTGGGG
AAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATGGTGACAGT
GACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCAGGACACGC
GCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGGCAAAGAAA
TATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCGATTGCCTC
GGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGAACGGTCGG
ATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGCCCGGGAGC
TTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACAGAGTTTTC
ATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAGCTTTCAAT
CCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGCTGGAAAAC
ATTCGTCACCTCGGTACGTCTTTATGTCTGCAGAGTCGTTTGATGTGGTT
TCCGACCTTATATTTGTTGAGTGTACCTCTCCATTCCCTCTCATCTCCAA
CAACCCACGTACACACAGAGTTCGAGGTCGTCGACCTGAGCGCCAACGAA
ATGGCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCCCCACACGT
CAAAAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACCAGGTGCTT
TGCATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCAGTCTCTTC
CATTACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTTGGGCTGCA
GGTTCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGAAACATTGT
CGCATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTGTTTATTTT
CAATTTCTGTACTGACCAGAGACGAGGTGAGAAGAGACGGAAGGAGAGGA
GAGGGGGGCTGCGTGATGCATGTGTGGCTGCATTTAGAATTGACTGGACC
CTAACTGTGTGCCGCATGTTTCTAGGATGTAGGATAAGTTCCTTGCCTTT
TTAAAGAGCACAATAAGATTTCTATTTCAATTAAAAAAGAAAAAAGAAAA
AAGAATGACCTATGCGGGGG back to topCoding sequence (CDS) from alignment at chr5:674693..677112+ >NO05G02560.2 ID=NO05G02560.2|Name=NO05G02560.2|organism=Nannochloropsis oceanica|type=CDS|length=1773bp|location=Sequence derived from alignment at chr5:674693..677112+ (Nannochloropsis oceanica) ATGCTGGGCGGAGGTAGGTGGCGGCGGATGACACGACTACCAGCCTCATT GCTGATGCAGCGTGCGGCCGCCAGCAGTAGCGGGGCCTCGGTTGCAATTA CGGGAAGTAGCGCGACGGAGGATTTCAACAGCGACCACACGGACTACTTG GCCCGTATCCTTAATGCCCGTGTCTACGAGATTGCCATCGAGACGCCCTT ACAACCAGCGCCCTGCATGTCCAAGGCGATTCATAACAATGTGTTGCTAA AGAGAGAAGATTTGCAGCCCGTCTTCTCTTTCAAGCTTCGAGGTGCTTAT AATAAAATCGTCAGCACGCCTGCCGCAGACCTGGAACGGGGCGTCGTGGC CTGCTCGGCAGGCAACCACGCCCAAGGCGTTGCACTCTCCGCTTCGCGCA AAAATATCAAGGCCGTCATTGTCATGCCGTTGGCCACACCCCAGATTAAA GTGAATGCGGTCCGACGATTTGGAGGACCTACGGTGACGGTGAAGTTGCA CGGAAAGAACTACGATGAAGCGTCGGAGGAAGCATTGCGGTTGGCAAGGG AGGAGGGCTTGACGATGATCCATCCTTTTGATGACCCCGACGTTATTGCG GGGCAAGGCACAATAGGCATGGAGATCTTGAAAGCTACAAACGGGCAGCC ATTAGATGCCATCTTTGTGTGCGTGGGTGGTGGGGGTTTGCTTTCTGGAA TAGCTTCCTATGTCAAGGCGGTGCGGCCGTCAGTAAAAGTGATTGGGGTC GAGGCGGAGGACGCTGCGGGCATGACTACCTCTTTGGAGGCGGGTCACGT TATAACCTTGGATAGAGTCGGGTTGTTTGCCGACGGGGCAGCAGTACGGG TTGTGGGGAAGGAAACGTTTCGCGTGTGTAGTCAGTTGGTAGATGAGATG GTGACAGTGACAACGGACGAGATCTGCGCAGCGATCAAGGCGGGGTTTCA GGACACGCGCAGTGTGTTGGAGCCGGCAGGGGCGCTGGCGATAGCTGGGG CAAAGAAATATTGCGCGGCGGAACAGTGGAGAGACAAGACGATCGTGGCG ATTGCCTCGGGCGCGAACATGGACTTCGACCGGTTGCGGTTTGTGAGTGA ACGGTCGGATTCGACTGAGTCGCTGCTTTCGGTGAGAATAAGTGAGCGGC CCGGGAGCTTCAGACAATTGTACACGGGAATTTTCCCAAGAAATGTGACA GAGTTTTCATACCGATTCAATAGTCCGGATACGGCTGATGTGATCATCAG CTTTCAATCCATGCCTAACATGAATCGGGAGGAAGATAAGCAGCAGGTGC TGGAAAACATTCGTCACCTCGGTACGTCTTTATGTCTGCAGAGTCGTTTG ATGTGGTTTCCGACCTTATATTTGTTGAGTGTACCTCTCCATTCCCTCTC ATCTCCAACAACCCACGTACACACAGAGTTCGAGGTCGTCGACCTGAGCG CCAACGAAATGGCCAAGGCTCACGCCCGATACCTCGCTGGCGGGCGGGCC CCACACGTCAAAAATGAGCAGCTTTATCGATTTGAGTTCCCCGAGCGACC AGGTGCTTTGCATGCCTTCTTGACGGACCTGAGCAAGGGTTGGAACGTCA GTCTCTTCCATTACCGTAACCAGGGCGGGGACATTGGTCGTGTCCTTGTT GGGCTGCAGGTTCCCCCTGAGGAATTTGCAGAGTTTCAGAAGTGGTTGGA AACATTGTCGCATTTGGGCTACGTCTATTTCGCTGAGACGAAGAATCCTG TTTATTTTCAATTTCTGTACTGA back to top
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