NO05G02540.1, NO05G02540.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02540.1
Unique NameNO05G02540.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length1816
Alignment locationchr5:669337..671742 +

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:669337..671742 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02540.1 vs.
Match: EWM28137.1 (lysosomal pro-x [Nannochloropsis gaditana])

HSP 1 Score: 834.7 bits (2155), Expect = 1.600e-238
Identity = 400/554 (72.20%), Postives = 460/554 (83.03%), Query Frame = 0 
Query:    4 ITSLRR-RPLL----WLLIVLQRSLILTAAQQ----GGLRSHWAVPSVTDPHAPPRPGVADCDELYFEQPIDHFSYHAESKLDGLTFQQRYFACGKQWWGGPDAPIFFYTGNEADVTLYLNASGLMWENAPKFGALLVFAEHRYYGKSQPLQPFTARKMDFLSSQQALADYSVLITALKIELESPNSPVIAFGGSYGGMLASWWRILYPHLVNGAIAGSAPVLDFEPLIDDDGIKSFSYIVTRDASPEGGSNEFCADNVRAAWPVIGEMAKTVEGRQELMQRFRICPGEGVMATEKDVGGLLGWLQSAWAYLAMGNYPFPSTYILNGQGTLPAWPVRVACESLNFPLTDASNASLLEGLREAVSIYYNYTMVGEEGEEERLECFDLAAGVNEESLTVENHWTYQFCTEMFMPSGSDGVRDMFWSAPWNADAQSDYCFGRFGIHPRRTWAATMYGGRKALETASNIVFSNGLLDPWSGTGVLQSVSDSVVALTLNEGAHHLDLMFSTPDDPEELKVIRKTELMYIERWITEAGEAVKTGKKGENENVQRRLRHQV 549
            IT +R+ RP++     +L+V+   L     Q     GGL SHWA+P+    H P RPG++DC E YFEQPIDHF+YH E+ L+GLTFQQRYF CG+ WWGG  APIFFYTGNEADVTLYLNASGLMWENAP+FGALLVFAEHRYYGKSQPLQPFTA KMD+LSS+QALADY+ LI ALK EL SP+SPVIAFGGSYGGMLASWWR+LYPHLV+GAIAGSAPVLDFEP + ++GI+SFSYIVTRDASPEGGSN +CADNVRAAWPVI ++A +V GRQEL +RFRIC  +G +AT +DV  LLGWLQSAWAY+AMGNYPFPSTY+LNG+GTLPAWPVRVACE LNFP T +SN +LLEGLR AVS+YYNY+       E  ++CFDLAAGVN+ES  VE+HWTYQFCTEMFMPSGSDG+RDMFW APW+A+AQSD CF RFG+HPRRTWA TMYGG KALETASNIVFSNGLLDPWSGTGVL ++SD+VVALTL EGAHHLDLMFST DDPEE+K +RKTEL +I RW+ EAGEA +  K+       R++   V
Sbjct:   52 ITYMRKIRPVMNRHPSILVVMYGLLACVNVQSQRFHGGLTSHWALPAA---HDPSRPGISDCSERYFEQPIDHFAYHPENNLEGLTFQQRYFVCGELWWGGLGAPIFFYTGNEADVTLYLNASGLMWENAPEFGALLVFAEHRYYGKSQPLQPFTAHKMDYLSSEQALADYARLIIALKTELNSPDSPVIAFGGSYGGMLASWWRLLYPHLVSGAIAGSAPVLDFEPEVGEEGIESFSYIVTRDASPEGGSNAYCADNVRAAWPVIKDLAASVTGRQELTERFRIC--QGALATAEDVDLLLGWLQSAWAYMAMGNYPFPSTYVLNGRGTLPAWPVRVACEFLNFPTTLSSNVTLLEGLRNAVSVYYNYS---RPDGEAPIQCFDLAAGVNKESQMVEDHWTYQFCTEMFMPSGSDGIRDMFWPAPWDANAQSDACFRRFGVHPRRTWAVTMYGGLKALETASNIVFSNGLLDPWSGTGVLHNISDTVVALTLKEGAHHLDLMFSTSDDPEEVKEVRKTELAHIARWVMEAGEATEWAKEKRTVKDMRKMLRTV 597
The following BLAST results are available for this feature:
BLAST of NO05G02540.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28137.11.600e-23872.20lysosomal pro-x [Nannochloropsis gaditana][more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02540NO05G02540Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02540.1NO05G02540.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02540.1.cds1NO05G02540.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02540.1.cds2NO05G02540.1.cds2Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02540.1.cds3NO05G02540.1.cds3Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02540.1.cds4NO05G02540.1.cds4Nannochloropsis oceanica (N. oceanica IMET1)CDS
NO05G02540.1.cds5NO05G02540.1.cds5Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02540.1 ID=NO05G02540.1|Name=NO05G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=1816bp
ACACAGGCATGAAGCCCATCACAAGCCTGCGGCGGCGACCGCTACTTTGG
TTGCTGATAGTTCTCCAGCGATCTTTGATTTTAACAGCTGCCCAGCAGGG
CGGTCTCAGATCGCACTGGGCGGTGCCTTCTGTCACTGATCCACATGCAC
CACCGCGACCTGGGGTGGCGGACTGCGACGAGCTTTATTTTGAGCAGCCC
ATCGACCACTTCTCCTATCACGCTGAATCTAAGTTGGACGGTTTGACATT
CCAACAGCGCTACTTTGCTTGCGGAAAGCAGTGGTGGGGAGGCCCTGACG
CGCCCATCTTTTTCTACACGGGTAATGAGGCAGATGTAACGCTTTATTTG
AACGCCTCGGGTTTGATGTGGGAAAACGCTCCCAAGTTTGGGGCCCTCCT
GGTCTTTGCGGAGCATCGTTACTACGGCAAGAGCCAACCGCTTCAGCCAT
TTACAGCACGCAAGATGGACTTTTTGAGCTCCCAGCAAGCCCTCGCGGAC
TATTCTGTCCTTATAACCGCCCTTAAGATTGAGCTCGAATCGCCAAATTC
TCCCGTTATTGCATTTGGTGGGAGCTACGGCGGGATGCTCGCGAGCTGGT
GGCGCATCCTCTACCCTCACCTCGTCAATGGAGCCATTGCTGGCTCGGCC
CCCGTGCTAGATTTCGAGCCTCTGATAGACGACGACGGGATAAAGTCATT
TTCGTATATAGTGACGAGGGACGCGTCACCTGAGGGTGGGTCAAATGAAT
TTTGTGCGGATAATGTGCGGGCGGCGTGGCCAGTAATTGGGGAGATGGCG
AAGACCGTGGAGGGACGGCAGGAGTTGATGCAGAGGTTTCGAATTTGCCC
CGGGGAGGGGGTTATGGCGACAGAGAAGGATGTAGGCGGGCTGTTGGGAT
GGCTGCAGAGCGCCTGGGCCTATTTGGCTATGGGGAACTACCCTTTCCCC
TCCACCTACATCTTAAACGGACAAGGTACCTTGCCCGCTTGGCCCGTCCG
CGTCGCCTGCGAATCGCTCAATTTCCCTCTTACAGACGCTAGCAATGCTT
CTCTGTTGGAAGGATTGAGAGAGGCAGTGTCCATTTATTATAACTACACG
ATGGTGGGGGAGGAGGGGGAGGAAGAAAGGTTGGAGTGCTTTGATTTGGC
TGCAGGCGTGAATGAAGAGAGCCTGACAGTGGAGAACCATTGGACTTACC
AGTTTTGCACGGAGATGTTTATGCCGAGTGGGAGTGATGGGGTGCGAGAC
ATGTTCTGGTCCGCCCCATGGAACGCGGACGCCCAATCTGACTACTGTTT
TGGACGCTTCGGCATCCATCCGCGCCGTACCTGGGCCGCGACCATGTACG
GAGGTCGCAAGGCTCTGGAGACAGCATCAAATATTGTATTTTCGAATGGC
CTGTTGGATCCATGGTCGGGAACGGGGGTCTTGCAAAGTGTGTCAGATTC
GGTTGTTGCTTTGACTTTGAACGAGGGGGCGCACCATTTGGACTTAATGT
TTTCCACACCCGACGACCCGGAGGAGCTGAAGGTGATACGCAAGACGGAG
CTCATGTATATTGAGCGATGGATTACGGAGGCGGGAGAAGCTGTCAAGAC
GGGGAAGAAGGGGGAGAATGAGAATGTGCAGAGGCGGCTGCGACATCAGG
TTTGAGAATTGGTTGGGAGTGATGGATCATGAGAGCAAAGGAAAATAGGT
AGTAAAAGGGCATGACACCGTTTCGAGGGAGGGAAAGGCTGTAAAAATGA
TAAAGAACAAAAGAGCTGCCTTGGTAAGTCGCGTATGGTCAAGTTCATGG
AACAATTGAGAAAGGG
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protein sequence of NO05G02540.1

>NO05G02540.1-protein ID=NO05G02540.1-protein|Name=NO05G02540.1|organism=Nannochloropsis oceanica|type=polypeptide|length=549bp
MKPITSLRRRPLLWLLIVLQRSLILTAAQQGGLRSHWAVPSVTDPHAPPR
PGVADCDELYFEQPIDHFSYHAESKLDGLTFQQRYFACGKQWWGGPDAPI
FFYTGNEADVTLYLNASGLMWENAPKFGALLVFAEHRYYGKSQPLQPFTA
RKMDFLSSQQALADYSVLITALKIELESPNSPVIAFGGSYGGMLASWWRI
LYPHLVNGAIAGSAPVLDFEPLIDDDGIKSFSYIVTRDASPEGGSNEFCA
DNVRAAWPVIGEMAKTVEGRQELMQRFRICPGEGVMATEKDVGGLLGWLQ
SAWAYLAMGNYPFPSTYILNGQGTLPAWPVRVACESLNFPLTDASNASLL
EGLREAVSIYYNYTMVGEEGEEERLECFDLAAGVNEESLTVENHWTYQFC
TEMFMPSGSDGVRDMFWSAPWNADAQSDYCFGRFGIHPRRTWAATMYGGR
KALETASNIVFSNGLLDPWSGTGVLQSVSDSVVALTLNEGAHHLDLMFST
PDDPEELKVIRKTELMYIERWITEAGEAVKTGKKGENENVQRRLRHQV*
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mRNA from alignment at chr5:669337..671742+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02540.1 ID=NO05G02540.1|Name=NO05G02540.1|organism=Nannochloropsis oceanica|type=mRNA|length=2406bp|location=Sequence derived from alignment at chr5:669337..671742+ (Nannochloropsis oceanica)
ACACAGGCATGAAGCCCATCACAAGCCTGCGGCGGCGACCGCTACTTTGG
TTGCTGATAGTTCTCCAGCGATCTTTGATTTTAACAGCTGCCCAGCAGGG
CGGTCTCAGATCGCACTGGGCGGTGCCTTCTGTCACTGATCCACATGCAC
CACCGCGACCTGGGGTGGCGGACTGCGACGAGCTTTATTTTGAGCAGCCC
ATCGACCACTTCTCCTATCACGCTGAATCTAAGTTGGACGGTTTGACATT
CCAACAGCGCTACTTTGCTTGCGGAAAGCAGTGGTGGGGAGGCCCTGACG
CGCCCATCTTTTTCTACACGTGAGAAAATGGGCAGCGGAGGGTGGGTTTC
TGGGTGTGGGCATTCTCGCTTCCTTTCACTTCCTCGTTCCCAATGTCAAT
GGCATCGTGAAAAGTCAACGCTCCCTAAATTATTTTCTTACATTGGTTTT
CCTTGACATCACAAAAAGGGGTAATGAGGCAGATGTAACGCTTTATTTGA
ACGCCTCGGGTTTGATGTGGGAAAACGCTCCCAAGTTTGGGGCCCTCCTG
GTCTTTGCGGAGCATCGTTACTACGGCAAGAGCCAACCGCTTCAGCCATT
TACAGCACGCAAGATGGACTTTTTGAGGTACTTACACTGCACGCTGCAGA
GTCAGATTTGAACGACCACCAACCCCCGTCTTCCCCCCTTTCTCCACGCC
AAACAGCTCCCAGCAAGCCCTCGCGGACTATTCTGTCCTTATAACCGCCC
TTAAGATTGAGCTCGAATCGCCAAATTCTCCCGTTATTGCATTTGGTGGG
AGCTACGGCGGGATGCTCGCGAGCTGGTGGCGCATCCTCTACCCTCACCT
CGTCAATGGAGCCATTGCTGGCTCGGCCCCCGTGCTAGATTTCGAGCCTC
TGATAGACGACGACGGGATAAAGTCATTTTCGTATATAGTGACGAGGGAC
GCGTCACCTGAGGGTGGGTCAAATGAATTTTGTGCGGATAATGTGCGGGC
GGCGTGGCCAGTAATTGGGGAGATGGCGAAGACCGTGGAGGGACGGCAGG
AGTTGATGCAGAGGTTTCGAATTTGCCCCGGGGAGGGGGTTATGGCGACA
GAGAAGGATGTAGGCGGGCTGTTGGGATGGCTGCAGAGTAAGTCGATAGG
AGGGATGGCCATAGAGGGGTTCGGACGAGAAGGTATAGAAAAAGGCAGGC
GGACACTGACCTTCCTCGTTTCTTCGATCTATGCAAAGAGAGCATCAACA
CTGCTCGAGTAGCACTTTCCCTTCTCTCCCCACACAGTCTCCCCCCCCTT
GACCTTCTTATCAACAGGCGCCTGGGCCTATTTGGCTATGGGGAACTACC
CTTTCCCCTCCACCTACATCTTAAACGGACAAGGTACCTTGCCCGCTTGG
CCCGTCCGCGTCGCCTGCGAATCGCTCAATTTCCCTCTTACAGACGCTAG
CAATGCTTCTCTGTTGGAAGGATTGAGAGAGGCAGTGTCCATTTATTATA
ACTACACGATGGTGGGGGAGGAGGGGGAGGAAGAAAGGTTGGAGTGCTTT
GATTTGGCTGCAGGCGTGAATGAAGAGAGCCTGACAGTGGAGAACCATTG
GACTTACCAGTTTTGCACGGAGATGTTTATGCCGAGTGGGAGTGATGGGG
TGCGAGGTAAGATTTTGTCTGGAAATATATTATGCTACCATCTGTGTTGT
CGTGCGAGGAGCTTTCATACTTGGACGCAAAAAGAGGGGGAGGATGTTTC
CATATCTTATATATACATAGCCCCAGAATTGAGCGACTCGCACAGCAAGT
CTTTCAACTCTCCAAACCACCCTCCTGGATACCAACAGACATGTTCTGGT
CCGCCCCATGGAACGCGGACGCCCAATCTGACTACTGTTTTGGACGCTTC
GGCATCCATCCGCGCCGTACCTGGGCCGCGACCATGTACGGAGGTCGCAA
GGCTCTGGAGACAGCATCAAATATTGTATTTTCGAATGGCCTGTTGGATC
CATGGTCGGGAACGGGGGTCTTGCAAAGTGTGTCAGATTCGGTTGTTGCT
TTGACTTTGAACGAGGGGGCGCACCATTTGGACTTAATGTTTTCCACACC
CGACGACCCGGAGGAGCTGAAGGTGATACGCAAGACGGAGCTCATGTATA
TTGAGCGATGGATTACGGAGGCGGGAGAAGCTGTCAAGACGGGGAAGAAG
GGGGAGAATGAGAATGTGCAGAGGCGGCTGCGACATCAGGTTTGAGAATT
GGTTGGGAGTGATGGATCATGAGAGCAAAGGAAAATAGGTAGTAAAAGGG
CATGACACCGTTTCGAGGGAGGGAAAGGCTGTAAAAATGATAAAGAACAA
AAGAGCTGCCTTGGTAAGTCGCGTATGGTCAAGTTCATGGAACAATTGAG
AAAGGG
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Coding sequence (CDS) from alignment at chr5:669337..671742+

>NO05G02540.1 ID=NO05G02540.1|Name=NO05G02540.1|organism=Nannochloropsis oceanica|type=CDS|length=1647bp|location=Sequence derived from alignment at chr5:669337..671742+ (Nannochloropsis oceanica)
ATGAAGCCCATCACAAGCCTGCGGCGGCGACCGCTACTTTGGTTGCTGAT
AGTTCTCCAGCGATCTTTGATTTTAACAGCTGCCCAGCAGGGCGGTCTCA
GATCGCACTGGGCGGTGCCTTCTGTCACTGATCCACATGCACCACCGCGA
CCTGGGGTGGCGGACTGCGACGAGCTTTATTTTGAGCAGCCCATCGACCA
CTTCTCCTATCACGCTGAATCTAAGTTGGACGGTTTGACATTCCAACAGC
GCTACTTTGCTTGCGGAAAGCAGTGGTGGGGAGGCCCTGACGCGCCCATC
TTTTTCTACACGGGTAATGAGGCAGATGTAACGCTTTATTTGAACGCCTC
GGGTTTGATGTGGGAAAACGCTCCCAAGTTTGGGGCCCTCCTGGTCTTTG
CGGAGCATCGTTACTACGGCAAGAGCCAACCGCTTCAGCCATTTACAGCA
CGCAAGATGGACTTTTTGAGCTCCCAGCAAGCCCTCGCGGACTATTCTGT
CCTTATAACCGCCCTTAAGATTGAGCTCGAATCGCCAAATTCTCCCGTTA
TTGCATTTGGTGGGAGCTACGGCGGGATGCTCGCGAGCTGGTGGCGCATC
CTCTACCCTCACCTCGTCAATGGAGCCATTGCTGGCTCGGCCCCCGTGCT
AGATTTCGAGCCTCTGATAGACGACGACGGGATAAAGTCATTTTCGTATA
TAGTGACGAGGGACGCGTCACCTGAGGGTGGGTCAAATGAATTTTGTGCG
GATAATGTGCGGGCGGCGTGGCCAGTAATTGGGGAGATGGCGAAGACCGT
GGAGGGACGGCAGGAGTTGATGCAGAGGTTTCGAATTTGCCCCGGGGAGG
GGGTTATGGCGACAGAGAAGGATGTAGGCGGGCTGTTGGGATGGCTGCAG
AGCGCCTGGGCCTATTTGGCTATGGGGAACTACCCTTTCCCCTCCACCTA
CATCTTAAACGGACAAGGTACCTTGCCCGCTTGGCCCGTCCGCGTCGCCT
GCGAATCGCTCAATTTCCCTCTTACAGACGCTAGCAATGCTTCTCTGTTG
GAAGGATTGAGAGAGGCAGTGTCCATTTATTATAACTACACGATGGTGGG
GGAGGAGGGGGAGGAAGAAAGGTTGGAGTGCTTTGATTTGGCTGCAGGCG
TGAATGAAGAGAGCCTGACAGTGGAGAACCATTGGACTTACCAGTTTTGC
ACGGAGATGTTTATGCCGAGTGGGAGTGATGGGGTGCGAGACATGTTCTG
GTCCGCCCCATGGAACGCGGACGCCCAATCTGACTACTGTTTTGGACGCT
TCGGCATCCATCCGCGCCGTACCTGGGCCGCGACCATGTACGGAGGTCGC
AAGGCTCTGGAGACAGCATCAAATATTGTATTTTCGAATGGCCTGTTGGA
TCCATGGTCGGGAACGGGGGTCTTGCAAAGTGTGTCAGATTCGGTTGTTG
CTTTGACTTTGAACGAGGGGGCGCACCATTTGGACTTAATGTTTTCCACA
CCCGACGACCCGGAGGAGCTGAAGGTGATACGCAAGACGGAGCTCATGTA
TATTGAGCGATGGATTACGGAGGCGGGAGAAGCTGTCAAGACGGGGAAGA
AGGGGGAGAATGAGAATGTGCAGAGGCGGCTGCGACATCAGGTTTGA
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Synonyms
Publications