NO05G02530.1, NO05G02530.1 (mRNA) Nannochloropsis oceanica

Overview
NameNO05G02530.1
Unique NameNO05G02530.1
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica IMET1)
Sequence length735
Alignment locationchr5:668262..668996 -

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Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
chr5genomechr5:668262..668996 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica IMET12017-10-24
Homology annotation for N. oceanica IMET12017-10-25
InterPro analysis for N. oceanica IMET12017-10-25
Annotated Terms
Homology
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BLAST of NO05G02530.1 vs.
Match: EWM28118.1 (hypothetical protein Naga_100036g27 [Nannochloropsis gaditana])

HSP 1 Score: 256.9 bits (655), Expect = 6.300e-65
Identity = 141/244 (57.79%), Postives = 171/244 (70.08%), Query Frame = 0 
Query:    1 MATFFCSCLASLMGGGGGDGEGKDDSMRPGPAVEMTRGKKGSSGSADNRAFPTTPRVKHDLDMKGSQVQVKTAANGCYVVAGKGLAIASLALEQDCSFWQVKVLKAGRFSMGVSRAVDAKVLEENDEKGSLEWAVIVAGGSGNEITKREEAAEKDAAADNMVTAQDGHVFSCVFDQSSFPMLCFYQNGKELEGKAVNRVRGLVFPALQVFGEGAELSFLFHENDWTHPPPSSRHMMILETRNMI 245
            M   FCSCLA L          +        +V MTRG  G  G+ D     TTPRVKHD++M+GSQV+VK  ANG ++++G GL IASL LEQDCSFWQVKVL+ GRFSMGVSRA +A  LE   E   LEWA+ V   S    ++REE  E       MV ++DG +FSCVFDQSS PML F+QNGKELE +A+NRVRGLVFPAL++FG+G ELSFLFHE++W++PPPSSR+MMILETR MI
Sbjct:    1 MVNEFCSCLAHLWESSEEHERSQKRGGGAARSVNMTRGDTGK-GTED----ATTPRVKHDINMRGSQVRVKELANGRFLISGAGLTIASLPLEQDCSFWQVKVLQPGRFSMGVSRAAEASALEGMKEP--LEWALRV--NSAEAQSEREEDGESA-----MVVSRDGDIFSCVFDQSSCPMLRFFQNGKELEKQAINRVRGLVFPALELFGDGVELSFLFHESEWSYPPPSSRYMMILETRRMI 230
The following BLAST results are available for this feature:
BLAST of NO05G02530.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1
Match NameE-valueIdentityDescription
EWM28118.16.300e-6557.79hypothetical protein Naga_100036g27 [Nannochlorops... [more]
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NO05G02530NO05G02530Nannochloropsis oceanica (N. oceanica IMET1)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
NO05G02530.1NO05G02530.1-proteinNannochloropsis oceanica (N. oceanica IMET1)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
NO05G02530.1.cds1NO05G02530.1.cds1Nannochloropsis oceanica (N. oceanica IMET1)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>NO05G02530.1 ID=NO05G02530.1|Name=NO05G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp
ATGGCCACATTCTTCTGTTCATGCTTGGCCAGCTTAATGGGCGGCGGTGG
TGGCGATGGGGAAGGTAAGGACGACTCAATGAGACCAGGACCAGCAGTGG
AAATGACCCGAGGAAAAAAAGGAAGCTCAGGCTCGGCTGACAACAGAGCG
TTCCCTACCACGCCCCGTGTCAAGCACGACTTGGATATGAAGGGGAGCCA
AGTGCAGGTCAAGACGGCGGCCAACGGATGCTATGTCGTTGCTGGAAAAG
GGCTTGCCATCGCCTCGCTGGCACTCGAGCAAGACTGCTCATTTTGGCAA
GTGAAAGTCCTTAAAGCAGGTCGCTTCAGTATGGGCGTGTCAAGGGCTGT
GGACGCTAAGGTATTAGAAGAAAACGACGAGAAGGGGTCGCTAGAATGGG
CTGTGATTGTGGCTGGCGGCAGTGGTAACGAGATAACGAAGCGGGAGGAG
GCTGCAGAAAAAGATGCCGCAGCTGATAACATGGTGACTGCGCAAGACGG
TCATGTGTTTTCGTGTGTGTTCGATCAATCTTCCTTTCCCATGCTGTGTT
TTTATCAGAATGGGAAGGAATTGGAGGGTAAGGCTGTCAATCGCGTGCGA
GGCTTAGTTTTCCCAGCACTCCAAGTATTCGGGGAGGGGGCGGAGCTCTC
ATTTCTTTTTCACGAAAATGACTGGACTCATCCACCACCCTCAAGCCGGC
ATATGATGATTCTTGAGACGCGGAATATGATTTAA
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protein sequence of NO05G02530.1

>NO05G02530.1-protein ID=NO05G02530.1-protein|Name=NO05G02530.1|organism=Nannochloropsis oceanica|type=polypeptide|length=245bp
MATFFCSCLASLMGGGGGDGEGKDDSMRPGPAVEMTRGKKGSSGSADNRA
FPTTPRVKHDLDMKGSQVQVKTAANGCYVVAGKGLAIASLALEQDCSFWQ
VKVLKAGRFSMGVSRAVDAKVLEENDEKGSLEWAVIVAGGSGNEITKREE
AAEKDAAADNMVTAQDGHVFSCVFDQSSFPMLCFYQNGKELEGKAVNRVR
GLVFPALQVFGEGAELSFLFHENDWTHPPPSSRHMMILETRNMI*
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mRNA from alignment at chr5:668262..668996-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>NO05G02530.1 ID=NO05G02530.1|Name=NO05G02530.1|organism=Nannochloropsis oceanica|type=mRNA|length=735bp|location=Sequence derived from alignment at chr5:668262..668996- (Nannochloropsis oceanica)
ATGGCCACATTCTTCTGTTCATGCTTGGCCAGCTTAATGGGCGGCGGTGG
TGGCGATGGGGAAGGTAAGGACGACTCAATGAGACCAGGACCAGCAGTGG
AAATGACCCGAGGAAAAAAAGGAAGCTCAGGCTCGGCTGACAACAGAGCG
TTCCCTACCACGCCCCGTGTCAAGCACGACTTGGATATGAAGGGGAGCCA
AGTGCAGGTCAAGACGGCGGCCAACGGATGCTATGTCGTTGCTGGAAAAG
GGCTTGCCATCGCCTCGCTGGCACTCGAGCAAGACTGCTCATTTTGGCAA
GTGAAAGTCCTTAAAGCAGGTCGCTTCAGTATGGGCGTGTCAAGGGCTGT
GGACGCTAAGGTATTAGAAGAAAACGACGAGAAGGGGTCGCTAGAATGGG
CTGTGATTGTGGCTGGCGGCAGTGGTAACGAGATAACGAAGCGGGAGGAG
GCTGCAGAAAAAGATGCCGCAGCTGATAACATGGTGACTGCGCAAGACGG
TCATGTGTTTTCGTGTGTGTTCGATCAATCTTCCTTTCCCATGCTGTGTT
TTTATCAGAATGGGAAGGAATTGGAGGGTAAGGCTGTCAATCGCGTGCGA
GGCTTAGTTTTCCCAGCACTCCAAGTATTCGGGGAGGGGGCGGAGCTCTC
ATTTCTTTTTCACGAAAATGACTGGACTCATCCACCACCCTCAAGCCGGC
ATATGATGATTCTTGAGACGCGGAATATGATTTAA
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Coding sequence (CDS) from alignment at chr5:668262..668996-

>NO05G02530.1 ID=NO05G02530.1|Name=NO05G02530.1|organism=Nannochloropsis oceanica|type=CDS|length=735bp|location=Sequence derived from alignment at chr5:668262..668996- (Nannochloropsis oceanica)
ATGGCCACATTCTTCTGTTCATGCTTGGCCAGCTTAATGGGCGGCGGTGG
TGGCGATGGGGAAGGTAAGGACGACTCAATGAGACCAGGACCAGCAGTGG
AAATGACCCGAGGAAAAAAAGGAAGCTCAGGCTCGGCTGACAACAGAGCG
TTCCCTACCACGCCCCGTGTCAAGCACGACTTGGATATGAAGGGGAGCCA
AGTGCAGGTCAAGACGGCGGCCAACGGATGCTATGTCGTTGCTGGAAAAG
GGCTTGCCATCGCCTCGCTGGCACTCGAGCAAGACTGCTCATTTTGGCAA
GTGAAAGTCCTTAAAGCAGGTCGCTTCAGTATGGGCGTGTCAAGGGCTGT
GGACGCTAAGGTATTAGAAGAAAACGACGAGAAGGGGTCGCTAGAATGGG
CTGTGATTGTGGCTGGCGGCAGTGGTAACGAGATAACGAAGCGGGAGGAG
GCTGCAGAAAAAGATGCCGCAGCTGATAACATGGTGACTGCGCAAGACGG
TCATGTGTTTTCGTGTGTGTTCGATCAATCTTCCTTTCCCATGCTGTGTT
TTTATCAGAATGGGAAGGAATTGGAGGGTAAGGCTGTCAATCGCGTGCGA
GGCTTAGTTTTCCCAGCACTCCAAGTATTCGGGGAGGGGGCGGAGCTCTC
ATTTCTTTTTCACGAAAATGACTGGACTCATCCACCACCCTCAAGCCGGC
ATATGATGATTCTTGAGACGCGGAATATGATTTAA
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Synonyms
Publications