NO05G02500.1, NO05G02500.1 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	NO05G02500.1
Unique Name	NO05G02500.1
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica IMET1)
Sequence length	2945
Alignment location	chr5:663898..667100 +

Link to JBrowse

Properties

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
chr5	genome	chr5:663898..667100 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica IMET1	2017-10-24
Homology annotation for N. oceanica IMET1	2017-10-25
InterPro analysis for N. oceanica IMET1	2017-10-25

Annotated Terms

Homology

[Close]

BLAST of NO05G02500.1 vs.
Match: EWM28131.1 (puff-specific protein bx42 [Nannochloropsis gaditana])

HSP 1 Score: 604.7 bits (1558), Expect = 1.900e-169
Identity = 316/374 (84.49%), Postives = 341/374 (91.18%), Query Frame = 0

Query:    1 MATLGLSRLLPKPIQNYQVHKDDPSPAALARLEIAGKQPIPPYGQRRKGFVPRAVGDFGDGGAFPEVHIIQYPLKMGKKEAEAAPASSQAIVSVDVSADGEVNFDAIVKQGTNRNKIVFSKLSDMKGGDVNQDVLSKPTPEEEAAQAAKTKNALELLIGGKIAAARPVQLAKNPGADEPTYVRYTPNPNAPGFNSNAKQRVIELVEAQVDPMEPARHKHKKVPRGPPDDPVPVLHSPPRKVSVEDQEAWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQETTINPKFAALPQALYIAEDKAREQIAARAKIDQKIKKLEREQKEQELRELAARSRMARAGINVAAGEGGDGGQRREREESYYGRGAAGGGGGG 375
            MATLGLSRLLPKP Q YQVHKDDPSP ALARLEI+GK+ IPPYG+R  GFVPRAVGDFGDGGAFPEVH++QYPL MGKK+A +A   S AIVSVDV+ADG+VNFDAIV+QGTNRNKIV SKLSDM+GGD +++VLSKPTPEEEA QAAKTK+ALE LIGGKIAAARPVQLAK PG++EPTYVRYTPNPNAPG+N+NAKQRVIELV+AQVDPMEPA+HKHKKVPRGPP+DPVPVLHSPPRKVSVEDQEAWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQETTINPKFAALPQALYIAEDKAREQIAARAKIDQKIKKLEREQKEQELRELAARSRMARAG+      G  GG+R E    +YGR  AGGG GG
Sbjct:   35 MATLGLSRLLPKPTQTYQVHKDDPSPTALARLEISGKKVIPPYGERN-GFVPRAVGDFGDGGAFPEVHVVQYPLNMGKKDAASA---SNAIVSVDVAADGKVNFDAIVRQGTNRNKIVHSKLSDMRGGDADENVLSKPTPEEEAEQAAKTKSALEALIGGKIAAARPVQLAKAPGSEEPTYVRYTPNPNAPGYNTNAKQRVIELVDAQVDPMEPAKHKHKKVPRGPPEDPVPVLHSPPRKVSVEDQEAWKIPPCISNWKNAKGYTIPLDKRLAADGRGLQETTINPKFAALPQALYIAEDKAREQIAARAKIDQKIKKLEREQKEQELRELAARSRMARAGV-----PGEVGGRREEESVGHYGR--AGGGAGG 397

The following BLAST results are available for this feature:

BLAST of NO05G02500.1 vs.

BLAST of NO05G02500.1 vs.
Analysis Date: 2017-10-25 (Homology annotation for N. oceanica IMET1)
Total hits: 1


Match Name	E-value	Identity	Description
EWM28131.1	1.900e-169	84.49	puff-specific protein bx42 [Nannochloropsis gadita...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
NO05G02500	NO05G02500	Nannochloropsis oceanica (N. oceanica IMET1)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02500.1	NO05G02500.1-protein	Nannochloropsis oceanica (N. oceanica IMET1)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
NO05G02500.1.cds1	NO05G02500.1.cds1	Nannochloropsis oceanica (N. oceanica IMET1)	CDS
NO05G02500.1.cds2	NO05G02500.1.cds2	Nannochloropsis oceanica (N. oceanica IMET1)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at chr5:663898..667100+
coding sequence from alignment at chr5:663898..667100+

mRNA sequence

>NO05G02500.1 ID=NO05G02500.1|Name=NO05G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=2945bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTGCTTCCACTGCTTCGC
CTCAATTTTTGGCTGCTGCCGTTCCACTCGCTATGACCCTTCACACGCTT
ACTCCCAACTCCACCACCGCCTCCCTTCCTGTCCTTTCCATCTTCTTTCT
CCTTCCTGCCCTTTCCATCTTCTCTCTCCAAATGGTGCCGCTTCTCATTC
CTCTTTTCCTTCTCCCTTCTTCTCTCCCGATCCCAGTCCACATTCACATC
AGGTGCCCCAACGTCTACAGGCCATCGATGTTCCTCTCTACCTCCTTTGC
TCTCTTTGTGCTGAGGATGACGATGGTGGTGCGAAGAGTGATGAAGCTCA
GGATGATAACCACGACTGCTTCCCCCTCTTTCTCTCTCCATGCTTCGGCT
TCGACTGCGTTTGTTCATTCCTTCGCCACTACCCCGTCGTCGTTCTCGGT
TTCGTTCTCTTGCTTCACGACTTCTCGAACGTCTCCCTCGTTCTCGGTAG
TGGTGGTGGTGCTGGTGGGAAGGAGGAGGCAGACGACGGTTAGGGATGAC
TTCATTCCCTCGTCGGCTGGGACTCCGAGAATGTGAGCGGGAACGATCCC
TCCCCACGCCCATGATAAGCTGTATTATTATCAATTAAAGGGGAAAAGGA
AAGAAGTAGAGTGGAGTGAGTGAGATTTATGGTGAATGTGATGTCTAAAG
TTGTAGTCCAGTACAACCACCACCATCGTCGCCATCATCGCTCACACAGC
TCCTACTTTTGACGCCCGCGGCGAATACACAACGCGTGCAGCAGTTGAGC
AAGGATAACGTGTTGATGTTATACCTAAAGGACGTCTCCGCCTTTCAAAC
TCCTCCATCCTCTGTCGTTGATGTGCCTACTGCCCTCCCCCGGAGGCGCA
TTGCTGTTATAGGCGCCTGGGCCCTCCTTCCCAGCGACATTTGTTTAAAA
AAAGAAGGGAAACTTTTTTCTGCAATGATACACAATGGGAGTGGGGGGGG
AAGAAGGGGAGGCGTATGAGTACGATGTCTGTGAAGGACTTGTGCATGCC
AGGTGAAGCTCATCATAAAGCATCCCCTCGTCTCTATCTCCTTGCTGTCG
CAGTCCTTACCACCCATGGGTAGGGGCGTGGGAAGGCCGGTTGATGCTGA
TGCGGCAGCAGGAGATGACGATGGTGGTGGTGGTGGTATCATAAAGGAGT
CTTGCGAGCGAGGTCATGGAGAGGAGCGAGTGGAGAAATCTGGGGAAAGG
ATCCCGTCCGAGAAGATGGGGCGCCGCAGACGGATTGAAAGGGCTCGTGA
GCTTGTCAATCCAGTAATTGTCTATGTCGTGGGCGAAGAAGTGGAAGAAA
GGAGGCGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGAGAAGACGGAGGAGAAAGGCGGCGATGCCACTGGCTCGGGAGACA
GTCAGTGACGAAGCTTCCTGTGGCATTCCTTTCCTCACATTAATTCACGT
TTGTCGTACAGGCACAAGCATCACCAGCTTTTTCTCATCGTCCTTGCGGG
AACTGCAGCGGGGACTGGTCGTGTCCTCTGCTGCGGATGAGGGAAGCTGC
GAAGCGCTCAGAAGCAACTTGCCAAACTCGAAAGCCACCCTGATAGGCCT
CCTCTCACTTCATCAGCTCGTGACATCGCGGCTGCCGGCAGCGTCACTCA
CTCCCGCACCACACGCCAAACGCACAATTTACAGACGTCTCTACACCATC
TTTGTTGCATCGAACATCCAGTAGTTTCACGCGCGGCCGAGTCACCACCA
CTGGCAAAACGATGGCGACCCTCGGCTTGTCCCGGCTGCTGCCCAAGCCG
ATACAGAACTATCAAGTCCACAAAGACGACCCCTCCCCAGCCGCCTTGGC
ACGCCTCGAGATCGCCGGCAAGCAACCCATCCCGCCCTACGGCCAACGCA
GGAAAGGCTTCGTGCCCCGTGCCGTGGGCGATTTTGGAGATGGAGGAGCG
TTTCCCGAAGTACATATTATACAATATCCTCTGAAAATGGGTAAAAAAGA
GGCGGAGGCTGCACCTGCCTCCTCCCAAGCCATCGTCTCTGTCGATGTCT
CCGCCGACGGCGAGGTCAATTTTGACGCCATTGTTAAACAAGGCACGAAC
CGCAACAAAATCGTCTTCTCCAAGCTTTCGGACATGAAAGGAGGGGATGT
AAATCAAGATGTGCTCTCGAAGCCCACCCCCGAAGAAGAGGCAGCCCAGG
CTGCAAAAACCAAAAACGCCCTCGAGCTCCTCATTGGAGGGAAAATCGCT
GCGGCCCGCCCTGTGCAACTGGCAAAGAACCCCGGTGCGGACGAGCCAAC
TTATGTCCGTTACACGCCTAATCCTAACGCCCCTGGTTTCAATTCCAACG
CAAAACAACGCGTCATCGAGCTGGTAGAAGCCCAAGTCGACCCCATGGAG
CCCGCCCGGCACAAGCACAAGAAAGTCCCCCGTGGCCCCCCTGACGACCC
CGTGCCCGTCCTCCACTCTCCCCCTCGCAAAGTCAGTGTGGAGGACCAAG
AAGCCTGGAAGATTCCCCCTTGCATCTCTAACTGGAAGAACGCCAAGGGC
TACACAATTCCCCTCGACAAGCGCCTGGCTGCTGATGGCCGCGGCCTGCA
AGAAACGACCATCAACCCCAAATTCGCGGCCTTGCCTCAAGCATTGTACA
TCGCGGAGGATAAAGCGCGAGAACAGATTGCGGCTCGGGCGAAGATTGAC
CAGAAAATCAAAAAGTTGGAGAGGGAGCAGAAGGAGCAGGAGCTGCGGGA
GTTGGCGGCCAGGTCACGGATGGCCAGGGCGGGCATCAATGTGGCAGCGG
GTGAAGGAGGAGATGGGGGGCAAAGAAGGGAGAGGGAGGAGAGCTACTAC
GGGCGGGGGGCAGCAGGAGGAGGGGGAGGGGGCGAGGGGGTTTAG

protein sequence of NO05G02500.1

>NO05G02500.1-protein ID=NO05G02500.1-protein|Name=NO05G02500.1|organism=Nannochloropsis oceanica|type=polypeptide|length=378bp
MATLGLSRLLPKPIQNYQVHKDDPSPAALARLEIAGKQPIPPYGQRRKGF
VPRAVGDFGDGGAFPEVHIIQYPLKMGKKEAEAAPASSQAIVSVDVSADG
EVNFDAIVKQGTNRNKIVFSKLSDMKGGDVNQDVLSKPTPEEEAAQAAKT
KNALELLIGGKIAAARPVQLAKNPGADEPTYVRYTPNPNAPGFNSNAKQR
VIELVEAQVDPMEPARHKHKKVPRGPPDDPVPVLHSPPRKVSVEDQEAWK
IPPCISNWKNAKGYTIPLDKRLAADGRGLQETTINPKFAALPQALYIAED
KAREQIAARAKIDQKIKKLEREQKEQELRELAARSRMARAGINVAAGEGG
DGGQRREREESYYGRGAAGGGGGGEGV*

mRNA from alignment at chr5:663898..667100+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>NO05G02500.1 ID=NO05G02500.1|Name=NO05G02500.1|organism=Nannochloropsis oceanica|type=mRNA|length=3203bp|location=Sequence derived from alignment at chr5:663898..667100+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTGCTTCCACTGCTTCGC
CTCAATTTTTGGCTGCTGCCGTTCCACTCGCTATGACCCTTCACACGCTT
ACTCCCAACTCCACCACCGCCTCCCTTCCTGTCCTTTCCATCTTCTTTCT
CCTTCCTGCCCTTTCCATCTTCTCTCTCCAAATGGTGCCGCTTCTCATTC
CTCTTTTCCTTCTCCCTTCTTCTCTCCCGATCCCAGTCCACATTCACATC
AGGTGCCCCAACGTCTACAGGCCATCGATGTTCCTCTCTACCTCCTTTGC
TCTCTTTGTGCTGAGGATGACGATGGTGGTGCGAAGAGTGATGAAGCTCA
GGATGATAACCACGACTGCTTCCCCCTCTTTCTCTCTCCATGCTTCGGCT
TCGACTGCGTTTGTTCATTCCTTCGCCACTACCCCGTCGTCGTTCTCGGT
TTCGTTCTCTTGCTTCACGACTTCTCGAACGTCTCCCTCGTTCTCGGTAG
TGGTGGTGGTGCTGGTGGGAAGGAGGAGGCAGACGACGGTTAGGGATGAC
TTCATTCCCTCGTCGGCTGGGACTCCGAGAATGTGAGCGGGAACGATCCC
TCCCCACGCCCATGATAAGCTGTATTATTATCAATTAAAGGGGAAAAGGA
AAGAAGTAGAGTGGAGTGAGTGAGATTTATGGTGAATGTGATGTCTAAAG
TTGTAGTCCAGTACAACCACCACCATCGTCGCCATCATCGCTCACACAGC
TCCTACTTTTGACGCCCGCGGCGAATACACAACGCGTGCAGCAGTTGAGC
AAGGATAACGTGTTGATGTTATACCTAAAGGACGTCTCCGCCTTTCAAAC
TCCTCCATCCTCTGTCGTTGATGTGCCTACTGCCCTCCCCCGGAGGCGCA
TTGCTGTTATAGGCGCCTGGGCCCTCCTTCCCAGCGACATTTGTTTAAAA
AAAGAAGGGAAACTTTTTTCTGCAATGATACACAATGGGAGTGGGGGGGG
AAGAAGGGGAGGCGTATGAGTACGATGTCTGTGAAGGACTTGTGCATGCC
AGGTGAAGCTCATCATAAAGCATCCCCTCGTCTCTATCTCCTTGCTGTCG
CAGTCCTTACCACCCATGGGTAGGGGCGTGGGAAGGCCGGTTGATGCTGA
TGCGGCAGCAGGAGATGACGATGGTGGTGGTGGTGGTATCATAAAGGAGT
CTTGCGAGCGAGGTCATGGAGAGGAGCGAGTGGAGAAATCTGGGGAAAGG
ATCCCGTCCGAGAAGATGGGGCGCCGCAGACGGATTGAAAGGGCTCGTGA
GCTTGTCAATCCAGTAATTGTCTATGTCGTGGGCGAAGAAGTGGAAGAAA
GGAGGCGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGAAGGAGGAGG
AGGAGAGAAGACGGAGGAGAAAGGCGGCGATGCCACTGGCTCGGGAGACA
GTCAGTGACGAAGCTTCCTGTGGCATTCCTTTCCTCACATTAATTCACGT
TTGTCGTACAGGCACAAGCATCACCAGCTTTTTCTCATCGTCCTTGCGGG
AACTGCAGCGGGGACTGGTCGTGTCCTCTGCTGCGGATGAGGGAAGCTGC
GAAGCGCTCAGAAGCAACTTGCCAAACTCGAAAGCCACCCTGATAGGCCT
CCTCTCACTTCATCAGCTCGTGACATCGCGGCTGCCGGCAGCGTCACTCA
CTCCCGCACCACACGCCAAACGCACAATTTACAGACGTCTCTACACCATC
TTTGTTGCATCGAACATCCAGTAGTTTCACGCGCGGCCGAGTCACCACCA
CTGGCAAAACGATGGCGACCCTCGGCTTGTCCCGGCTGCTGCCCAAGCCG
ATACAGAACTATCAAGTCCACAAAGACGACCCCTCCCCAGCCGCCTTGGC
ACGCCTCGAGGTAAGGACATGAGAGATTTGGGGTGTTGTGGTGTACAGGG
GACTCATGCCTTGTTCTCTGTAAGTGCAAATGTCGGGCATCCCCTTCTCC
CTCCCTCCCCATCATATCATCACACCTTCTCACCCGCACATGGAGTGGAA
GGCTAGCGGCTTCATAAAATTGCAAATAGCAAAACTTGTGGTTCTACATC
CTACCAGTCTGTATCGTGTCAATGCGAAGCACCAATCTCACCCGCCCTTC
CCCCCACCGAACATGCAGATCGCCGGCAAGCAACCCATCCCGCCCTACGG
CCAACGCAGGAAAGGCTTCGTGCCCCGTGCCGTGGGCGATTTTGGAGATG
GAGGAGCGTTTCCCGAAGTACATATTATACAATATCCTCTGAAAATGGGT
AAAAAAGAGGCGGAGGCTGCACCTGCCTCCTCCCAAGCCATCGTCTCTGT
CGATGTCTCCGCCGACGGCGAGGTCAATTTTGACGCCATTGTTAAACAAG
GCACGAACCGCAACAAAATCGTCTTCTCCAAGCTTTCGGACATGAAAGGA
GGGGATGTAAATCAAGATGTGCTCTCGAAGCCCACCCCCGAAGAAGAGGC
AGCCCAGGCTGCAAAAACCAAAAACGCCCTCGAGCTCCTCATTGGAGGGA
AAATCGCTGCGGCCCGCCCTGTGCAACTGGCAAAGAACCCCGGTGCGGAC
GAGCCAACTTATGTCCGTTACACGCCTAATCCTAACGCCCCTGGTTTCAA
TTCCAACGCAAAACAACGCGTCATCGAGCTGGTAGAAGCCCAAGTCGACC
CCATGGAGCCCGCCCGGCACAAGCACAAGAAAGTCCCCCGTGGCCCCCCT
GACGACCCCGTGCCCGTCCTCCACTCTCCCCCTCGCAAAGTCAGTGTGGA
GGACCAAGAAGCCTGGAAGATTCCCCCTTGCATCTCTAACTGGAAGAACG
CCAAGGGCTACACAATTCCCCTCGACAAGCGCCTGGCTGCTGATGGCCGC
GGCCTGCAAGAAACGACCATCAACCCCAAATTCGCGGCCTTGCCTCAAGC
ATTGTACATCGCGGAGGATAAAGCGCGAGAACAGATTGCGGCTCGGGCGA
AGATTGACCAGAAAATCAAAAAGTTGGAGAGGGAGCAGAAGGAGCAGGAG
CTGCGGGAGTTGGCGGCCAGGTCACGGATGGCCAGGGCGGGCATCAATGT
GGCAGCGGGTGAAGGAGGAGATGGGGGGCAAAGAAGGGAGAGGGAGGAGA
GCTACTACGGGCGGGGGGCAGCAGGAGGAGGGGGAGGGGGCGAGGGGGTT
TAG

Coding sequence (CDS) from alignment at chr5:663898..667100+

>NO05G02500.1 ID=NO05G02500.1|Name=NO05G02500.1|organism=Nannochloropsis oceanica|type=CDS|length=1134bp|location=Sequence derived from alignment at chr5:663898..667100+ (Nannochloropsis oceanica)
ATGGCGACCCTCGGCTTGTCCCGGCTGCTGCCCAAGCCGATACAGAACTA
TCAAGTCCACAAAGACGACCCCTCCCCAGCCGCCTTGGCACGCCTCGAGA
TCGCCGGCAAGCAACCCATCCCGCCCTACGGCCAACGCAGGAAAGGCTTC
GTGCCCCGTGCCGTGGGCGATTTTGGAGATGGAGGAGCGTTTCCCGAAGT
ACATATTATACAATATCCTCTGAAAATGGGTAAAAAAGAGGCGGAGGCTG
CACCTGCCTCCTCCCAAGCCATCGTCTCTGTCGATGTCTCCGCCGACGGC
GAGGTCAATTTTGACGCCATTGTTAAACAAGGCACGAACCGCAACAAAAT
CGTCTTCTCCAAGCTTTCGGACATGAAAGGAGGGGATGTAAATCAAGATG
TGCTCTCGAAGCCCACCCCCGAAGAAGAGGCAGCCCAGGCTGCAAAAACC
AAAAACGCCCTCGAGCTCCTCATTGGAGGGAAAATCGCTGCGGCCCGCCC
TGTGCAACTGGCAAAGAACCCCGGTGCGGACGAGCCAACTTATGTCCGTT
ACACGCCTAATCCTAACGCCCCTGGTTTCAATTCCAACGCAAAACAACGC
GTCATCGAGCTGGTAGAAGCCCAAGTCGACCCCATGGAGCCCGCCCGGCA
CAAGCACAAGAAAGTCCCCCGTGGCCCCCCTGACGACCCCGTGCCCGTCC
TCCACTCTCCCCCTCGCAAAGTCAGTGTGGAGGACCAAGAAGCCTGGAAG
ATTCCCCCTTGCATCTCTAACTGGAAGAACGCCAAGGGCTACACAATTCC
CCTCGACAAGCGCCTGGCTGCTGATGGCCGCGGCCTGCAAGAAACGACCA
TCAACCCCAAATTCGCGGCCTTGCCTCAAGCATTGTACATCGCGGAGGAT
AAAGCGCGAGAACAGATTGCGGCTCGGGCGAAGATTGACCAGAAAATCAA
AAAGTTGGAGAGGGAGCAGAAGGAGCAGGAGCTGCGGGAGTTGGCGGCCA
GGTCACGGATGGCCAGGGCGGGCATCAATGTGGCAGCGGGTGAAGGAGGA
GATGGGGGGCAAAGAAGGGAGAGGGAGGAGAGCTACTACGGGCGGGGGGC
AGCAGGAGGAGGGGGAGGGGGCGAGGGGGTTTAG

Synonyms

Publications